Wall clock time and date at job start Fri Apr 10 2020 17:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 119.99645 * 2 1 4 4 H 1.48498 * 109.47163 * 268.80387 * 3 2 1 5 5 H 1.48503 * 109.47233 * 28.80627 * 3 2 1 6 6 H 1.48503 * 109.47009 * 148.80810 * 3 2 1 7 7 C 1.38811 * 120.00601 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00029 * 344.25244 * 7 2 1 9 9 N 1.36941 * 120.00263 * 164.24332 * 7 2 1 10 10 C 1.47160 * 120.70851 * 150.96643 * 9 7 2 11 11 C 1.53882 * 108.02989 * 132.75380 * 10 9 7 12 12 H 1.09002 * 112.58351 * 182.22494 * 11 10 9 13 13 C 1.54134 * 107.70856 * 306.32273 * 11 10 9 14 14 C 1.54284 * 104.88885 * 89.41303 * 13 11 10 15 15 C 1.54546 * 104.84896 * 359.80913 * 14 13 11 16 16 H 1.08994 * 112.18156 * 146.41677 * 15 14 13 17 17 C 1.49246 * 120.76635 * 331.04886 * 9 7 2 18 18 N 1.48305 * 107.21134 * 58.35864 * 11 10 9 19 19 C 1.34777 * 128.07799 * 106.69908 * 18 11 10 20 20 O 1.21513 * 120.00216 * 174.08190 * 19 18 11 21 21 C 1.48157 * 119.99654 * 354.36288 * 19 18 11 22 22 C 1.39891 * 121.12287 * 340.01603 * 21 19 18 23 23 N 1.31760 * 119.78681 * 179.97438 * 22 21 19 24 24 N 1.28275 * 122.42023 * 359.97438 * 23 22 21 25 25 C 1.32283 * 122.43666 * 0.02562 * 24 23 22 26 26 O 1.35702 * 120.08002 * 179.97438 * 25 24 23 27 27 C 1.39236 * 119.83564 * 359.74176 * 25 24 23 28 28 H 0.96995 * 120.00456 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.75198 * 13.11562 * 10 9 7 30 30 H 1.09004 * 109.78815 * 252.40883 * 10 9 7 31 31 H 1.09001 * 110.50867 * 330.47317 * 13 11 10 32 32 H 1.09008 * 110.27556 * 208.23311 * 13 11 10 33 33 H 1.09004 * 110.36375 * 240.96385 * 14 13 11 34 34 H 1.09001 * 110.45512 * 118.69480 * 14 13 11 35 35 H 1.09001 * 110.51790 * 107.82465 * 17 9 7 36 36 H 1.08996 * 109.75277 * 346.59201 * 17 9 7 37 37 H 1.08001 * 120.10673 * 359.95861 * 22 21 19 38 38 H 0.96700 * 113.99899 * 90.00383 * 26 25 24 39 39 H 1.07999 * 121.11845 * 180.26339 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.5228 2.0319 -1.3997 5 1 1.4350 2.6599 0.6746 6 1 3.5348 1.4477 0.7251 7 6 2.0103 -1.2021 0.0005 8 1 1.5008 -2.1197 0.2548 9 7 3.3411 -1.2244 -0.3215 10 6 4.2339 -2.2488 0.2434 11 6 5.0753 -2.8330 -0.9049 12 1 5.7395 -3.6311 -0.5732 13 6 4.1040 -3.3062 -2.0042 14 6 3.9075 -2.0769 -2.9156 15 6 4.7768 -0.9689 -2.2790 16 1 5.2062 -0.3022 -3.0267 17 6 3.9188 -0.2099 -1.2513 18 7 5.8171 -1.7069 -1.5223 19 6 7.1310 -1.4236 -1.4235 20 8 7.6087 -0.5196 -2.0802 21 6 7.9942 -2.2184 -0.5189 22 6 7.4478 -2.9669 0.5290 23 7 8.2400 -3.6647 1.3174 24 7 9.5134 -3.6900 1.1648 25 6 10.1265 -3.0171 0.2050 26 8 11.4771 -3.0777 0.0878 27 6 9.3822 -2.2504 -0.6876 28 1 -0.4850 0.8400 -0.0004 29 1 3.6421 -3.0390 0.7054 30 1 4.8898 -1.7969 0.9877 31 1 3.1527 -3.6108 -1.5679 32 1 4.5431 -4.1297 -2.5674 33 1 2.8596 -1.7771 -2.9274 34 1 4.2507 -2.2939 -3.9271 35 1 4.5403 0.4993 -0.7046 36 1 3.1156 0.3208 -1.7624 37 1 6.3801 -2.9726 0.6915 38 1 11.7906 -3.7916 -0.4842 39 1 9.8609 -1.6962 -1.4814 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017641981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:36 Heat of formation + Delta-G solvation = 51.006588 kcal Electronic energy + Delta-G solvation = -25755.808533 eV Core-core repulsion = 22087.671989 eV Total energy + Delta-G solvation = -3668.136544 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.69900 -40.43225 -38.26371 -37.90820 -34.41961 -33.69750 -32.08689 -31.64377 -31.09581 -30.97493 -26.89939 -25.61939 -24.81893 -24.40381 -22.92144 -21.58876 -20.61281 -19.70666 -18.70654 -18.43864 -17.02128 -16.98423 -16.53708 -16.21969 -15.62648 -15.40178 -14.86346 -14.76988 -14.24933 -14.08570 -13.68423 -13.40779 -13.19970 -12.91316 -12.62783 -12.48180 -12.45592 -12.14595 -11.67368 -11.45438 -11.27054 -10.74921 -10.65475 -10.56488 -10.53014 -10.45636 -10.24634 -10.06595 -9.98925 -9.66702 -9.57636 -9.03259 -8.53471 -7.13244 -6.07658 -3.49623 0.02310 0.41239 2.52134 2.65309 2.99919 3.21138 3.31068 3.40624 3.41193 3.88398 4.00078 4.19184 4.38860 4.48744 4.49379 4.70131 4.85416 4.96066 5.06552 5.13751 5.24151 5.33014 5.41952 5.48613 5.57800 5.62976 5.71350 5.90936 5.97712 6.14869 6.21203 6.27576 6.31113 6.43778 6.46561 6.68653 6.90545 7.52275 7.72056 7.95155 8.17439 8.28345 8.70718 9.53977 9.89782 11.07724 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.022867 B = 0.004501 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.180396 B = 6219.548732 C = 6263.796370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.029 3.971 3 Si 0.884 3.116 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.273 1.273 7 C -0.262 4.262 8 H 0.091 0.909 9 N -0.599 5.599 10 C 0.134 3.866 11 C 0.086 3.914 12 H 0.099 0.901 13 C -0.110 4.110 14 C -0.113 4.113 15 C 0.119 3.881 16 H 0.097 0.903 17 C 0.110 3.890 18 N -0.596 5.596 19 C 0.575 3.425 20 O -0.535 6.535 21 C -0.102 4.102 22 C 0.045 3.955 23 N -0.211 5.211 24 N -0.247 5.247 25 C 0.254 3.746 26 O -0.470 6.470 27 C -0.081 4.081 28 H 0.265 0.735 29 H 0.082 0.918 30 H 0.027 0.973 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.036 0.964 36 H 0.088 0.912 37 H 0.199 0.801 38 H 0.406 0.594 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.081 -8.325 -4.908 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.171 4.171 3 Si 0.714 3.286 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.198 1.198 7 C -0.390 4.390 8 H 0.108 0.892 9 N -0.324 5.324 10 C 0.007 3.993 11 C -0.019 4.019 12 H 0.117 0.883 13 C -0.148 4.148 14 C -0.152 4.152 15 C 0.016 3.984 16 H 0.115 0.885 17 C -0.015 4.015 18 N -0.328 5.328 19 C 0.362 3.638 20 O -0.413 6.413 21 C -0.117 4.117 22 C -0.120 4.120 23 N -0.055 5.055 24 N -0.099 5.099 25 C 0.068 3.932 26 O -0.276 6.276 27 C -0.112 4.112 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.045 0.955 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.106 0.894 37 H 0.215 0.785 38 H 0.265 0.735 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 15.461 -8.233 -3.602 17.883 hybrid contribution 0.464 1.722 -1.428 2.285 sum 15.926 -6.511 -5.030 17.926 Atomic orbital electron populations 1.69757 1.05612 1.26744 1.52805 1.25286 0.95209 0.97510 0.99049 0.87020 0.79554 0.84601 0.77388 1.21408 1.23005 1.19789 1.18875 0.82035 0.94484 1.43563 0.89158 1.44792 1.05919 1.31779 1.49893 1.21585 0.92659 0.93244 0.91776 1.23467 0.93181 0.88511 0.96696 0.88295 1.22258 0.99785 0.97021 0.95742 1.22350 1.01465 0.94243 0.97123 1.23037 0.86330 0.94750 0.94321 0.88532 1.22421 0.96158 0.91798 0.91139 1.49134 1.05744 1.28837 1.49092 1.17387 0.80565 0.83795 0.82041 1.90789 1.73103 1.31937 1.45427 1.21271 0.94444 0.98312 0.97637 1.25520 1.03957 0.91636 0.90873 1.73135 0.96605 1.15067 1.20659 1.72783 1.04081 1.16235 1.16837 1.20748 0.85790 0.94487 0.92183 1.84824 1.14282 1.56199 1.72276 1.22733 0.92720 0.96848 0.98915 0.92541 0.89934 0.95517 0.88929 0.92350 0.88730 0.92290 0.94625 0.89401 0.78508 0.73521 0.81625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.10 13.97 55.49 0.78 -25.32 16 2 C 0.03 0.78 5.32 -17.43 -0.09 0.69 16 3 Si 0.88 21.43 24.16 -169.99 -4.11 17.32 16 4 H -0.29 -6.66 6.51 56.52 0.37 -6.30 16 5 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.27 -6.66 6.47 56.52 0.37 -6.29 16 7 C -0.26 -6.51 10.10 -15.06 -0.15 -6.66 16 8 H 0.09 2.39 8.06 -52.49 -0.42 1.96 16 9 N -0.60 -12.40 2.07 -169.36 -0.35 -12.75 16 10 C 0.13 2.21 5.37 -3.22 -0.02 2.19 16 11 C 0.09 1.16 2.93 -65.88 -0.19 0.97 16 12 H 0.10 1.09 5.36 -51.93 -0.28 0.81 16 13 C -0.11 -1.45 6.16 -25.47 -0.16 -1.61 16 14 C -0.11 -1.66 6.19 -25.25 -0.16 -1.82 16 15 C 0.12 1.96 4.09 -65.66 -0.27 1.70 16 16 H 0.10 1.56 7.91 -51.93 -0.41 1.15 16 17 C 0.11 2.21 3.72 -2.05 -0.01 2.20 16 18 N -0.60 -9.15 2.74 -154.26 -0.42 -9.57 16 19 C 0.58 9.00 7.79 -12.19 -0.09 8.91 16 20 O -0.53 -9.79 16.96 5.35 0.09 -9.70 16 21 C -0.10 -1.35 5.83 -104.60 -0.61 -1.96 16 22 C 0.04 0.57 9.39 -16.96 -0.16 0.41 16 23 N -0.21 -2.90 11.48 30.79 0.35 -2.55 16 24 N -0.25 -3.32 11.50 30.49 0.35 -2.97 16 25 C 0.25 2.88 7.85 -16.99 -0.13 2.75 16 26 O -0.47 -4.13 13.57 -18.81 -0.26 -4.39 16 27 C -0.08 -0.93 9.72 -38.60 -0.38 -1.31 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.08 1.28 7.97 -51.93 -0.41 0.86 16 30 H 0.03 0.45 7.24 -51.93 -0.38 0.07 16 31 H 0.09 1.33 7.83 -51.93 -0.41 0.92 16 32 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.09 1.57 7.86 -51.93 -0.41 1.16 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.77 6.54 -51.93 -0.34 0.43 16 36 H 0.09 1.89 4.97 -51.93 -0.26 1.63 16 37 H 0.20 2.36 3.34 -52.49 -0.18 2.18 16 38 H 0.41 1.27 9.06 45.56 0.41 1.68 16 39 H 0.17 1.67 7.91 -52.49 -0.42 1.26 16 LS Contribution 309.63 15.07 4.67 4.67 Total: -1.00 -32.04 309.63 -4.86 -36.89 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -3.54 Total: 1.92 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -2.42 Total: 6.45 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.71 Total: -53.16 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.16 Total: -14.09 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.11 Total: 17.32 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.04 -4.86 -36.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017641981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.899 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds