Wall clock time and date at job start Fri Apr 10 2020 17:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 119.99645 * 2 1 4 4 H 1.48498 * 109.47163 * 268.80387 * 3 2 1 5 5 H 1.48503 * 109.47233 * 28.80627 * 3 2 1 6 6 H 1.48503 * 109.47009 * 148.80810 * 3 2 1 7 7 C 1.38811 * 120.00601 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00029 * 344.25244 * 7 2 1 9 9 N 1.36941 * 120.00263 * 164.24332 * 7 2 1 10 10 C 1.47160 * 120.70851 * 150.96643 * 9 7 2 11 11 C 1.53882 * 108.02989 * 132.75380 * 10 9 7 12 12 H 1.09002 * 112.58351 * 182.22494 * 11 10 9 13 13 C 1.54134 * 107.70856 * 306.32273 * 11 10 9 14 14 C 1.54284 * 104.88885 * 89.41303 * 13 11 10 15 15 C 1.54546 * 104.84896 * 359.80913 * 14 13 11 16 16 H 1.08994 * 112.18156 * 146.41677 * 15 14 13 17 17 C 1.49246 * 120.76635 * 331.04886 * 9 7 2 18 18 N 1.48305 * 107.21134 * 58.35864 * 11 10 9 19 19 C 1.34777 * 128.07799 * 106.69908 * 18 11 10 20 20 O 1.21513 * 120.00216 * 174.08190 * 19 18 11 21 21 C 1.48157 * 119.99654 * 354.36288 * 19 18 11 22 22 C 1.39891 * 121.12287 * 340.01603 * 21 19 18 23 23 N 1.31760 * 119.78681 * 179.97438 * 22 21 19 24 24 N 1.28275 * 122.42023 * 359.97438 * 23 22 21 25 25 C 1.32283 * 122.43666 * 0.02562 * 24 23 22 26 26 O 1.35702 * 120.08002 * 179.97438 * 25 24 23 27 27 C 1.39236 * 119.83564 * 359.74176 * 25 24 23 28 28 H 0.96995 * 120.00456 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.75198 * 13.11562 * 10 9 7 30 30 H 1.09004 * 109.78815 * 252.40883 * 10 9 7 31 31 H 1.09001 * 110.50867 * 330.47317 * 13 11 10 32 32 H 1.09008 * 110.27556 * 208.23311 * 13 11 10 33 33 H 1.09004 * 110.36375 * 240.96385 * 14 13 11 34 34 H 1.09001 * 110.45512 * 118.69480 * 14 13 11 35 35 H 1.09001 * 110.51790 * 107.82465 * 17 9 7 36 36 H 1.08996 * 109.75277 * 346.59201 * 17 9 7 37 37 H 1.08001 * 120.10673 * 359.95861 * 22 21 19 38 38 H 0.96700 * 113.99899 * 90.00383 * 26 25 24 39 39 H 1.07999 * 121.11845 * 180.26339 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.5228 2.0319 -1.3997 5 1 1.4350 2.6599 0.6746 6 1 3.5348 1.4477 0.7251 7 6 2.0103 -1.2021 0.0005 8 1 1.5008 -2.1197 0.2548 9 7 3.3411 -1.2244 -0.3215 10 6 4.2339 -2.2488 0.2434 11 6 5.0753 -2.8330 -0.9049 12 1 5.7395 -3.6311 -0.5732 13 6 4.1040 -3.3062 -2.0042 14 6 3.9075 -2.0769 -2.9156 15 6 4.7768 -0.9689 -2.2790 16 1 5.2062 -0.3022 -3.0267 17 6 3.9188 -0.2099 -1.2513 18 7 5.8171 -1.7069 -1.5223 19 6 7.1310 -1.4236 -1.4235 20 8 7.6087 -0.5196 -2.0802 21 6 7.9942 -2.2184 -0.5189 22 6 7.4478 -2.9669 0.5290 23 7 8.2400 -3.6647 1.3174 24 7 9.5134 -3.6900 1.1648 25 6 10.1265 -3.0171 0.2050 26 8 11.4771 -3.0777 0.0878 27 6 9.3822 -2.2504 -0.6876 28 1 -0.4850 0.8400 -0.0004 29 1 3.6421 -3.0390 0.7054 30 1 4.8898 -1.7969 0.9877 31 1 3.1527 -3.6108 -1.5679 32 1 4.5431 -4.1297 -2.5674 33 1 2.8596 -1.7771 -2.9274 34 1 4.2507 -2.2939 -3.9271 35 1 4.5403 0.4993 -0.7046 36 1 3.1156 0.3208 -1.7624 37 1 6.3801 -2.9726 0.6915 38 1 11.7906 -3.7916 -0.4842 39 1 9.8609 -1.6962 -1.4814 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017641981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:35 Heat of formation + Delta-G solvation = 24.469363 kcal Electronic energy + Delta-G solvation = -25756.959274 eV Core-core repulsion = 22087.671989 eV Total energy + Delta-G solvation = -3669.287284 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.72244 -41.62180 -39.53410 -38.70416 -36.07428 -34.79033 -33.41944 -33.11408 -32.46716 -32.09259 -28.42990 -26.79742 -25.93992 -25.66191 -24.40272 -22.92670 -21.81506 -20.77065 -19.84123 -19.61694 -18.45218 -17.98359 -17.84539 -17.33144 -17.03264 -16.56866 -16.44929 -15.97995 -15.64907 -15.23520 -14.83285 -14.77364 -14.59394 -14.33913 -14.13333 -13.86701 -13.59857 -13.32902 -13.06581 -12.81484 -12.54494 -12.32737 -12.08146 -12.02810 -11.89921 -11.68382 -11.60994 -11.48466 -11.19162 -10.96411 -10.87796 -10.66253 -10.01997 -8.90420 -8.15102 -5.50188 -0.96562 -0.47481 1.25295 1.38579 1.40292 1.43886 1.51030 2.11289 2.33836 2.38507 2.88316 2.93302 3.00829 3.20193 3.25535 3.59263 3.64292 3.71425 3.86285 3.95480 3.99075 4.15163 4.17584 4.36553 4.42166 4.56606 4.59103 4.72184 4.74349 4.79096 4.79833 4.97886 5.06652 5.13251 5.25103 5.52110 5.83905 6.13744 6.33534 6.42268 6.73100 6.82608 7.34225 7.56390 7.99599 9.04313 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.022867 B = 0.004501 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.180396 B = 6219.548732 C = 6263.796370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.024 4.024 3 Si 0.932 3.068 4 H -0.276 1.276 5 H -0.316 1.316 6 H -0.276 1.276 7 C -0.230 4.230 8 H 0.072 0.928 9 N -0.609 5.609 10 C 0.126 3.874 11 C 0.097 3.903 12 H 0.135 0.865 13 C -0.106 4.106 14 C -0.109 4.109 15 C 0.123 3.877 16 H 0.101 0.899 17 C 0.109 3.891 18 N -0.597 5.597 19 C 0.579 3.421 20 O -0.564 6.564 21 C -0.111 4.111 22 C 0.050 3.950 23 N -0.226 5.226 24 N -0.267 5.267 25 C 0.269 3.731 26 O -0.472 6.472 27 C -0.069 4.069 28 H 0.260 0.740 29 H 0.093 0.907 30 H 0.030 0.970 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.020 0.980 36 H 0.069 0.931 37 H 0.203 0.797 38 H 0.432 0.568 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.908 -9.861 -5.646 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.219 4.219 3 Si 0.763 3.237 4 H -0.203 1.203 5 H -0.245 1.245 6 H -0.201 1.201 7 C -0.359 4.359 8 H 0.090 0.910 9 N -0.334 5.334 10 C 0.001 3.999 11 C -0.006 4.006 12 H 0.152 0.848 13 C -0.144 4.144 14 C -0.148 4.148 15 C 0.019 3.981 16 H 0.119 0.881 17 C -0.017 4.017 18 N -0.328 5.328 19 C 0.367 3.633 20 O -0.444 6.444 21 C -0.125 4.125 22 C -0.116 4.116 23 N -0.069 5.069 24 N -0.120 5.120 25 C 0.082 3.918 26 O -0.281 6.281 27 C -0.100 4.100 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.048 0.952 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.038 0.962 36 H 0.087 0.913 37 H 0.219 0.781 38 H 0.295 0.705 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 18.358 -9.822 -4.350 21.270 hybrid contribution -0.243 2.117 -1.189 2.440 sum 18.115 -7.705 -5.539 20.450 Atomic orbital electron populations 1.69864 1.06939 1.26857 1.56391 1.25736 0.95558 0.99893 1.00707 0.86227 0.77934 0.81889 0.77633 1.20255 1.24520 1.20108 1.18862 0.83736 0.93285 1.40041 0.91022 1.44858 1.05181 1.32695 1.50648 1.21831 0.92578 0.92392 0.93108 1.23446 0.93212 0.88497 0.95432 0.84765 1.22267 0.99360 0.97304 0.95498 1.22301 0.99571 0.94099 0.98789 1.22831 0.86563 0.95327 0.93360 0.88139 1.22310 0.95863 0.91839 0.91643 1.49153 1.05694 1.29011 1.48982 1.17679 0.80577 0.83361 0.81685 1.90775 1.73683 1.33217 1.46693 1.21068 0.94828 0.98891 0.97707 1.25485 1.04045 0.91433 0.90590 1.73108 0.96953 1.15708 1.21117 1.72724 1.04151 1.17233 1.17866 1.20718 0.86615 0.93328 0.91137 1.84789 1.12621 1.57642 1.73071 1.22907 0.92058 0.96079 0.98917 0.93073 0.88870 0.95205 0.90160 0.89059 0.91243 0.89727 0.96226 0.91320 0.78055 0.70461 0.80138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.70 13.97 21.65 0.30 -56.40 16 2 C -0.02 -1.30 5.32 84.86 0.45 -0.85 16 3 Si 0.93 45.41 24.16 68.60 1.66 47.07 16 4 H -0.28 -12.74 6.51 99.48 0.65 -12.09 16 5 H -0.32 -15.97 7.11 99.48 0.71 -15.27 16 6 H -0.28 -13.35 6.47 99.48 0.64 -12.71 16 7 C -0.23 -11.55 10.10 84.03 0.85 -10.70 16 8 H 0.07 3.85 8.06 -2.91 -0.02 3.83 16 9 N -0.61 -24.87 2.07 -689.74 -1.43 -26.30 16 10 C 0.13 3.93 5.37 86.55 0.47 4.40 16 11 C 0.10 2.34 2.93 45.33 0.13 2.47 16 12 H 0.14 2.39 5.36 -2.39 -0.01 2.38 16 13 C -0.11 -2.49 6.16 31.41 0.19 -2.30 16 14 C -0.11 -2.98 6.19 31.56 0.20 -2.78 16 15 C 0.12 3.87 4.09 45.47 0.19 4.06 16 16 H 0.10 3.11 7.91 -2.39 -0.02 3.09 16 17 C 0.11 4.31 3.72 86.15 0.32 4.64 16 18 N -0.60 -16.84 2.74 -760.25 -2.08 -18.92 16 19 C 0.58 16.67 7.79 86.88 0.68 17.35 16 20 O -0.56 -19.52 16.96 -3.76 -0.06 -19.58 16 21 C -0.11 -2.61 5.83 -19.85 -0.12 -2.72 16 22 C 0.05 1.12 9.39 85.10 0.80 1.92 16 23 N -0.23 -5.65 11.48 -56.51 -0.65 -6.30 16 24 N -0.27 -6.50 11.50 -170.29 -1.96 -8.46 16 25 C 0.27 5.24 7.85 84.86 0.67 5.91 16 26 O -0.47 -6.62 13.57 -90.22 -1.22 -7.84 16 27 C -0.07 -1.35 9.72 22.90 0.22 -1.13 16 28 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.09 2.71 7.97 -2.39 -0.02 2.69 16 30 H 0.03 0.94 7.24 -2.38 -0.02 0.92 16 31 H 0.08 2.13 7.83 -2.39 -0.02 2.11 16 32 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.07 2.26 7.86 -2.38 -0.02 2.24 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.02 0.85 6.54 -2.39 -0.02 0.83 16 36 H 0.07 2.98 4.97 -2.39 -0.01 2.97 16 37 H 0.20 4.23 3.34 -2.91 -0.01 4.22 16 38 H 0.43 1.02 9.06 -74.06 -0.67 0.35 16 39 H 0.18 3.02 7.91 -2.91 -0.02 3.00 16 Total: -1.00 -70.18 309.63 -0.08 -70.26 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 0.33 Total: 6.22 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 5.04 Total: 20.26 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -5.82 Total: -116.38 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -1.29 Total: -27.42 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.66 Total: 47.07 kcal Total: -70.18 -0.08 -70.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017641981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.727 kcal (2) G-P(sol) polarization free energy of solvation -70.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds