Wall clock time and date at job start Fri Apr 10 2020 17:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99543 * 2 1 4 4 H 1.48493 * 109.47181 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46851 * 120.00373 * 3 2 1 6 6 H 1.48503 * 109.47004 * 240.00195 * 3 2 1 7 7 C 1.38814 * 120.00531 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00016 * 154.82447 * 7 2 1 9 9 N 1.36933 * 119.99819 * 334.82978 * 7 2 1 10 10 C 1.47166 * 120.70870 * 154.81439 * 9 7 2 11 11 C 1.53882 * 108.02759 * 132.75671 * 10 9 7 12 12 H 1.09002 * 112.09563 * 181.90967 * 11 10 9 13 13 C 1.54547 * 107.83327 * 305.86496 * 11 10 9 14 14 C 1.55864 * 104.08947 * 89.28080 * 13 11 10 15 15 C 1.54537 * 105.00455 * 359.97438 * 14 13 11 16 16 H 1.08993 * 112.18674 * 146.41458 * 15 14 13 17 17 C 1.47168 * 120.70827 * 334.53318 * 9 7 2 18 18 N 1.48307 * 107.21056 * 58.36045 * 11 10 9 19 19 C 1.34777 * 128.07735 * 106.69806 * 18 11 10 20 20 O 1.21599 * 120.00104 * 355.66881 * 19 18 11 21 21 C 1.47572 * 120.00380 * 175.66313 * 19 18 11 22 22 C 1.38042 * 119.73326 * 185.64736 * 21 19 18 23 23 N 1.34878 * 119.95190 * 179.97438 * 22 21 19 24 24 H 0.97002 * 120.30679 * 180.02562 * 23 22 21 25 25 C 1.34950 * 119.38430 * 359.97438 * 23 22 21 26 26 O 1.21860 * 120.27308 * 180.02562 * 25 23 22 27 27 C 1.41788 * 119.45903 * 0.02562 * 25 23 22 28 28 N 1.30608 * 120.03352 * 359.73504 * 27 25 23 29 29 H 0.97005 * 119.99052 * 174.59777 * 1 2 3 30 30 H 1.09005 * 109.74571 * 252.38723 * 10 9 7 31 31 H 1.08994 * 109.74755 * 13.07061 * 10 9 7 32 32 H 1.08990 * 110.36835 * 207.91418 * 13 11 10 33 33 H 1.09001 * 110.36157 * 330.23848 * 13 11 10 34 34 H 1.09002 * 110.28114 * 241.09361 * 14 13 11 35 35 H 1.09004 * 110.38966 * 118.93297 * 14 13 11 36 36 H 1.09000 * 109.74851 * 346.87642 * 17 9 7 37 37 H 1.08996 * 109.74652 * 107.61269 * 17 9 7 38 38 H 1.08006 * 120.02360 * 359.95788 * 22 21 19 39 39 H 1.07997 * 119.98609 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 1.2850 2.7465 0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0134 -1.2466 -0.3973 9 7 1.4233 -2.3315 0.5054 10 6 1.8473 -3.6658 0.0520 11 6 2.0544 -4.5479 1.2958 12 1 2.4034 -5.5473 1.0362 13 6 3.0350 -3.8141 2.2385 14 6 2.1123 -2.9356 3.1365 15 6 0.6774 -3.2292 2.6437 16 1 -0.0514 -3.1923 3.4533 17 6 0.3591 -2.2370 1.5175 18 7 0.7673 -4.5774 2.0321 19 6 -0.1147 -5.5924 2.1237 20 8 0.0691 -6.6163 1.4941 21 6 -1.3034 -5.4612 2.9883 22 6 -2.1406 -6.5436 3.1700 23 7 -3.2280 -6.4288 3.9597 24 1 -3.8196 -7.1862 4.0913 25 6 -3.4848 -5.2507 4.5657 26 8 -4.4624 -5.1291 5.2830 27 6 -2.6078 -4.1555 4.3612 28 7 -1.5585 -4.2925 3.5957 29 1 -0.4849 -0.8364 -0.0791 30 1 1.0763 -4.1009 -0.5839 31 1 2.7815 -3.5862 -0.5038 32 1 3.5875 -4.5320 2.8445 33 1 3.7220 -3.1939 1.6628 34 1 2.3502 -1.8802 3.0042 35 1 2.2196 -3.2194 4.1834 36 1 0.3219 -1.2245 1.9195 37 1 -0.6007 -2.4909 1.0675 38 1 -1.9252 -7.4817 2.6800 39 1 -2.8054 -3.2087 4.8417 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017858836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:40 Heat of formation + Delta-G solvation = 25.943585 kcal Electronic energy + Delta-G solvation = -25812.890944 eV Core-core repulsion = 22143.667587 eV Total energy + Delta-G solvation = -3669.223357 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.98998 -40.13115 -38.25633 -37.35142 -35.54212 -34.32538 -31.68679 -30.81982 -30.42428 -30.11429 -26.18784 -25.71562 -24.70926 -23.75957 -22.90002 -21.52147 -20.28986 -19.58928 -18.58499 -18.15449 -17.50064 -16.79240 -16.28381 -15.84793 -15.56899 -15.11663 -14.89781 -14.52880 -14.13427 -13.79705 -13.64402 -13.33167 -13.10735 -12.83339 -12.56590 -12.32930 -12.05775 -11.94687 -11.63921 -11.57488 -10.97204 -10.77081 -10.59556 -10.46317 -10.23706 -10.03600 -9.97806 -9.76469 -9.49148 -9.20169 -8.64783 -8.46294 -8.16942 -6.86882 -6.06555 -3.21137 0.21551 1.02954 2.20382 2.80578 3.17998 3.49615 3.52000 3.60330 3.70460 3.90610 3.96364 4.41430 4.58467 4.71698 4.94920 5.08415 5.27533 5.35966 5.38969 5.54568 5.59949 5.74685 5.84898 5.86183 6.02886 6.05860 6.20942 6.34912 6.38120 6.47284 6.55601 6.64749 6.74692 6.92088 7.00160 7.08937 7.23018 7.41221 7.93407 7.99437 8.35984 8.55093 9.08021 9.83110 10.27018 11.21769 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.018439 B = 0.004836 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.151598 B = 5788.047673 C = 6654.441704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.023 4.023 3 Si 1.063 2.937 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.348 4.348 8 H 0.058 0.942 9 N -0.595 5.595 10 C 0.141 3.859 11 C 0.114 3.886 12 H 0.089 0.911 13 C -0.111 4.111 14 C -0.116 4.116 15 C 0.093 3.907 16 H 0.130 0.870 17 C 0.154 3.846 18 N -0.583 5.583 19 C 0.599 3.401 20 O -0.563 6.563 21 C -0.060 4.060 22 C 0.167 3.833 23 N -0.586 5.586 24 H 0.424 0.576 25 C 0.478 3.522 26 O -0.526 6.526 27 C 0.041 3.959 28 N -0.361 5.361 29 H 0.269 0.731 30 H 0.018 0.982 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.051 0.949 36 H 0.085 0.915 37 H 0.017 0.983 38 H 0.189 0.811 39 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 -11.968 9.088 15.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.225 4.225 3 Si 0.893 3.107 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.476 4.476 8 H 0.076 0.924 9 N -0.319 5.319 10 C 0.014 3.986 11 C 0.010 3.990 12 H 0.108 0.892 13 C -0.149 4.149 14 C -0.154 4.154 15 C -0.011 4.011 16 H 0.147 0.853 17 C 0.027 3.973 18 N -0.313 5.313 19 C 0.387 3.613 20 O -0.443 6.443 21 C -0.184 4.184 22 C 0.031 3.969 23 N -0.220 5.220 24 H 0.264 0.736 25 C 0.273 3.727 26 O -0.401 6.401 27 C -0.149 4.149 28 N -0.076 5.076 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.035 0.965 38 H 0.206 0.794 39 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.621 -10.144 9.008 13.663 hybrid contribution -0.632 -2.704 -0.117 2.779 sum -2.252 -12.848 8.891 15.786 Atomic orbital electron populations 1.70793 1.06589 1.30305 1.48000 1.25779 0.96482 1.01289 0.98981 0.83550 0.74793 0.76224 0.76160 1.21169 1.22022 1.22118 1.19955 0.97619 0.88222 1.41847 0.92395 1.44162 1.43324 1.00727 1.43725 1.21421 0.98393 0.86518 0.92304 1.22929 0.82713 0.99299 0.94047 0.89248 1.22582 0.97120 0.97944 0.97293 1.22634 0.94246 1.01467 0.97055 1.23721 0.98306 0.80829 0.98259 0.85268 1.21325 0.90369 0.97624 0.87954 1.48922 1.20107 1.13439 1.48813 1.16715 0.81128 0.82514 0.80956 1.90768 1.76464 1.29591 1.47517 1.20493 1.00780 0.89870 1.07214 1.23135 0.84190 1.01543 0.88044 1.43649 1.23272 1.15938 1.39102 0.73629 1.18809 0.88249 0.83837 0.81773 1.90996 1.29013 1.82296 1.37819 1.24933 0.90877 0.99378 0.99691 1.67938 1.15744 1.22318 1.01607 0.92001 0.96425 0.91766 0.92870 0.89812 0.89599 0.93040 0.89660 0.96516 0.79373 0.78771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.69 12.47 55.49 0.69 -26.00 16 2 C -0.02 -0.63 4.70 -17.43 -0.08 -0.71 16 3 Si 1.06 24.35 29.99 -169.99 -5.10 19.26 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.35 -9.17 9.54 -15.06 -0.14 -9.31 16 8 H 0.06 1.53 7.93 -52.49 -0.42 1.12 16 9 N -0.59 -14.11 2.17 -171.37 -0.37 -14.48 16 10 C 0.14 2.94 6.01 -3.22 -0.02 2.92 16 11 C 0.11 2.03 4.06 -65.66 -0.27 1.77 16 12 H 0.09 1.51 7.96 -51.93 -0.41 1.10 16 13 C -0.11 -1.81 6.31 -24.39 -0.15 -1.97 16 14 C -0.12 -1.95 6.22 -24.39 -0.15 -2.10 16 15 C 0.09 1.67 3.69 -65.90 -0.24 1.43 16 16 H 0.13 2.15 5.02 -51.93 -0.26 1.89 16 17 C 0.15 3.43 4.09 -3.46 -0.01 3.42 16 18 N -0.58 -10.41 2.75 -154.49 -0.42 -10.83 16 19 C 0.60 10.18 7.88 -12.45 -0.10 10.08 16 20 O -0.56 -10.39 16.63 5.28 0.09 -10.30 16 21 C -0.06 -0.82 6.69 -83.11 -0.56 -1.37 16 22 C 0.17 1.58 10.77 -16.28 -0.18 1.40 16 23 N -0.59 -4.85 5.28 -14.20 -0.08 -4.93 16 24 H 0.42 2.15 8.92 -40.82 -0.36 1.78 16 25 C 0.48 5.43 7.74 -14.83 -0.11 5.31 16 26 O -0.53 -7.45 17.95 5.05 0.09 -7.36 16 27 C 0.04 0.48 11.23 -16.72 -0.19 0.29 16 28 N -0.36 -4.92 6.70 -9.34 -0.06 -4.98 16 29 H 0.27 7.98 6.45 -40.82 -0.26 7.72 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 1.29 7.96 -51.93 -0.41 0.88 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.45 7.84 -51.93 -0.41 1.04 16 34 H 0.09 1.61 7.83 -51.93 -0.41 1.20 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 2.11 6.54 -51.93 -0.34 1.77 16 37 H 0.02 0.41 7.59 -51.93 -0.39 0.02 16 38 H 0.19 1.33 7.59 -52.48 -0.40 0.93 16 39 H 0.20 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 318.30 15.07 4.80 4.80 Total: -1.00 -33.53 318.30 -7.14 -40.67 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.56 Total: 3.03 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: -2.21 Total: 11.15 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -0.24 Total: -61.23 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: 0.18 Total: -17.66 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -5.10 Total: 19.26 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.53 -7.14 -40.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017858836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.611 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds