Wall clock time and date at job start Fri Apr 10 2020 17:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99543 * 2 1 4 4 H 1.48493 * 109.47181 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46851 * 120.00373 * 3 2 1 6 6 H 1.48503 * 109.47004 * 240.00195 * 3 2 1 7 7 C 1.38814 * 120.00531 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00016 * 154.82447 * 7 2 1 9 9 N 1.36933 * 119.99819 * 334.82978 * 7 2 1 10 10 C 1.47166 * 120.70870 * 154.81439 * 9 7 2 11 11 C 1.53882 * 108.02759 * 132.75671 * 10 9 7 12 12 H 1.09002 * 112.09563 * 181.90967 * 11 10 9 13 13 C 1.54547 * 107.83327 * 305.86496 * 11 10 9 14 14 C 1.55864 * 104.08947 * 89.28080 * 13 11 10 15 15 C 1.54537 * 105.00455 * 359.97438 * 14 13 11 16 16 H 1.08993 * 112.18674 * 146.41458 * 15 14 13 17 17 C 1.47168 * 120.70827 * 334.53318 * 9 7 2 18 18 N 1.48307 * 107.21056 * 58.36045 * 11 10 9 19 19 C 1.34777 * 128.07735 * 106.69806 * 18 11 10 20 20 O 1.21599 * 120.00104 * 355.66881 * 19 18 11 21 21 C 1.47572 * 120.00380 * 175.66313 * 19 18 11 22 22 C 1.38042 * 119.73326 * 185.64736 * 21 19 18 23 23 N 1.34878 * 119.95190 * 179.97438 * 22 21 19 24 24 H 0.97002 * 120.30679 * 180.02562 * 23 22 21 25 25 C 1.34950 * 119.38430 * 359.97438 * 23 22 21 26 26 O 1.21860 * 120.27308 * 180.02562 * 25 23 22 27 27 C 1.41788 * 119.45903 * 0.02562 * 25 23 22 28 28 N 1.30608 * 120.03352 * 359.73504 * 27 25 23 29 29 H 0.97005 * 119.99052 * 174.59777 * 1 2 3 30 30 H 1.09005 * 109.74571 * 252.38723 * 10 9 7 31 31 H 1.08994 * 109.74755 * 13.07061 * 10 9 7 32 32 H 1.08990 * 110.36835 * 207.91418 * 13 11 10 33 33 H 1.09001 * 110.36157 * 330.23848 * 13 11 10 34 34 H 1.09002 * 110.28114 * 241.09361 * 14 13 11 35 35 H 1.09004 * 110.38966 * 118.93297 * 14 13 11 36 36 H 1.09000 * 109.74851 * 346.87642 * 17 9 7 37 37 H 1.08996 * 109.74652 * 107.61269 * 17 9 7 38 38 H 1.08006 * 120.02360 * 359.95788 * 22 21 19 39 39 H 1.07997 * 119.98609 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 1.2850 2.7465 0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0134 -1.2466 -0.3973 9 7 1.4233 -2.3315 0.5054 10 6 1.8473 -3.6658 0.0520 11 6 2.0544 -4.5479 1.2958 12 1 2.4034 -5.5473 1.0362 13 6 3.0350 -3.8141 2.2385 14 6 2.1123 -2.9356 3.1365 15 6 0.6774 -3.2292 2.6437 16 1 -0.0514 -3.1923 3.4533 17 6 0.3591 -2.2370 1.5175 18 7 0.7673 -4.5774 2.0321 19 6 -0.1147 -5.5924 2.1237 20 8 0.0691 -6.6163 1.4941 21 6 -1.3034 -5.4612 2.9883 22 6 -2.1406 -6.5436 3.1700 23 7 -3.2280 -6.4288 3.9597 24 1 -3.8196 -7.1862 4.0913 25 6 -3.4848 -5.2507 4.5657 26 8 -4.4624 -5.1291 5.2830 27 6 -2.6078 -4.1555 4.3612 28 7 -1.5585 -4.2925 3.5957 29 1 -0.4849 -0.8364 -0.0791 30 1 1.0763 -4.1009 -0.5839 31 1 2.7815 -3.5862 -0.5038 32 1 3.5875 -4.5320 2.8445 33 1 3.7220 -3.1939 1.6628 34 1 2.3502 -1.8802 3.0042 35 1 2.2196 -3.2194 4.1834 36 1 0.3219 -1.2245 1.9195 37 1 -0.6007 -2.4909 1.0675 38 1 -1.9252 -7.4817 2.6800 39 1 -2.8054 -3.2087 4.8417 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017858836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:40 Heat of formation + Delta-G solvation = 2.414340 kcal Electronic energy + Delta-G solvation = -25813.911248 eV Core-core repulsion = 22143.667587 eV Total energy + Delta-G solvation = -3670.243662 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.93210 -41.54352 -39.54238 -38.50997 -36.50914 -36.11425 -33.23356 -32.29105 -32.06727 -31.30972 -27.95649 -26.63242 -25.88321 -25.35275 -24.45445 -22.95124 -21.70815 -20.81275 -19.87563 -19.50935 -18.81643 -18.08316 -17.30967 -17.11018 -16.82410 -16.52778 -15.92367 -15.84402 -15.67694 -15.49954 -15.24357 -14.88426 -14.44854 -14.32013 -13.79598 -13.72371 -13.54643 -13.15651 -12.94615 -12.85448 -12.72652 -12.52741 -12.13693 -12.01246 -11.85372 -11.67717 -11.40658 -11.30196 -11.20880 -10.48048 -10.32195 -9.89699 -9.45023 -8.84440 -8.18477 -5.32759 -0.62200 0.01308 1.36352 1.63379 1.65994 1.70836 1.88701 1.95545 2.54755 2.69743 2.90954 3.05016 3.26693 3.43611 3.50373 3.77877 3.85170 3.90503 4.08047 4.18401 4.22003 4.35230 4.52072 4.55561 4.69890 4.80946 4.94054 4.99346 5.08571 5.10801 5.12936 5.20028 5.22634 5.29476 5.30503 5.60987 5.85976 6.32049 6.40855 6.50772 6.61797 7.04395 7.04767 7.80371 8.24730 9.05463 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.018439 B = 0.004836 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.151598 B = 5788.047673 C = 6654.441704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.074 4.074 3 Si 1.113 2.887 4 H -0.297 1.297 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.346 4.346 8 H 0.057 0.943 9 N -0.607 5.607 10 C 0.139 3.861 11 C 0.119 3.881 12 H 0.104 0.896 13 C -0.102 4.102 14 C -0.112 4.112 15 C 0.107 3.893 16 H 0.146 0.854 17 C 0.167 3.833 18 N -0.592 5.592 19 C 0.598 3.402 20 O -0.580 6.580 21 C -0.098 4.098 22 C 0.212 3.788 23 N -0.565 5.565 24 H 0.444 0.556 25 C 0.483 3.517 26 O -0.552 6.552 27 C 0.038 3.962 28 N -0.383 5.383 29 H 0.250 0.750 30 H -0.007 1.007 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.056 0.944 37 H -0.017 1.017 38 H 0.222 0.778 39 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.928 -13.632 10.574 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.270 4.270 3 Si 0.938 3.062 4 H -0.223 1.223 5 H -0.200 1.200 6 H -0.206 1.206 7 C -0.476 4.476 8 H 0.075 0.925 9 N -0.331 5.331 10 C 0.012 3.988 11 C 0.015 3.985 12 H 0.122 0.878 13 C -0.141 4.141 14 C -0.151 4.151 15 C 0.003 3.997 16 H 0.163 0.837 17 C 0.041 3.959 18 N -0.322 5.322 19 C 0.388 3.612 20 O -0.462 6.462 21 C -0.221 4.221 22 C 0.074 3.926 23 N -0.199 5.199 24 H 0.288 0.712 25 C 0.279 3.721 26 O -0.430 6.430 27 C -0.152 4.152 28 N -0.098 5.098 29 H 0.061 0.939 30 H 0.011 0.989 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.001 0.999 38 H 0.238 0.762 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.961 -11.871 10.506 15.882 hybrid contribution -0.918 -2.320 -0.651 2.579 sum -1.879 -14.191 9.855 17.380 Atomic orbital electron populations 1.70922 1.07678 1.29134 1.51115 1.27086 0.96442 1.04600 0.98906 0.82873 0.73791 0.72168 0.77344 1.22320 1.20020 1.20603 1.20215 0.97423 0.89185 1.40729 0.92499 1.44351 1.43323 1.01212 1.44263 1.21517 0.97542 0.85784 0.93941 1.22803 0.83584 0.99255 0.92835 0.87828 1.22537 0.96503 0.98079 0.96943 1.22599 0.93229 1.00279 0.98957 1.23500 0.99730 0.79865 0.96607 0.83676 1.21085 0.88589 0.97412 0.88823 1.48966 1.20466 1.13541 1.49217 1.17177 0.81460 0.81878 0.80720 1.90745 1.77042 1.30106 1.48352 1.20133 1.01344 0.91474 1.09148 1.23369 0.82418 1.01156 0.85614 1.43515 1.22882 1.15892 1.37572 0.71219 1.18736 0.87569 0.84480 0.81355 1.90996 1.30025 1.82906 1.39033 1.25116 0.90420 1.00252 0.99411 1.67724 1.16896 1.22851 1.02330 0.93948 0.98903 0.91339 0.89696 0.90986 0.91894 0.89957 0.92585 0.99874 0.76176 0.77433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.29 12.47 21.65 0.27 -57.02 16 2 C -0.07 -4.13 4.70 84.86 0.40 -3.73 16 3 Si 1.11 49.70 29.99 68.60 2.06 51.76 16 4 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.35 -18.65 9.54 84.03 0.80 -17.85 16 8 H 0.06 3.03 7.93 -2.91 -0.02 3.01 16 9 N -0.61 -29.66 2.17 -696.08 -1.51 -31.17 16 10 C 0.14 5.90 6.01 86.55 0.52 6.42 16 11 C 0.12 4.14 4.06 45.47 0.18 4.32 16 12 H 0.10 3.32 7.96 -2.39 -0.02 3.30 16 13 C -0.10 -3.15 6.31 32.11 0.20 -2.94 16 14 C -0.11 -3.63 6.22 32.11 0.20 -3.43 16 15 C 0.11 3.83 3.69 45.31 0.17 4.00 16 16 H 0.15 4.78 5.02 -2.39 -0.01 4.76 16 17 C 0.17 7.79 4.09 86.40 0.35 8.15 16 18 N -0.59 -20.69 2.75 -760.94 -2.09 -22.78 16 19 C 0.60 19.53 7.88 86.71 0.68 20.21 16 20 O -0.58 -20.46 16.63 -4.03 -0.07 -20.52 16 21 C -0.10 -2.49 6.69 41.21 0.28 -2.22 16 22 C 0.21 3.32 10.77 84.18 0.91 4.23 16 23 N -0.57 -7.54 5.28 -316.88 -1.67 -9.21 16 24 H 0.44 2.80 8.92 -92.71 -0.83 1.97 16 25 C 0.48 9.95 7.74 85.09 0.66 10.61 16 26 O -0.55 -14.69 17.95 -4.86 -0.09 -14.78 16 27 C 0.04 0.82 11.23 85.75 0.96 1.79 16 28 N -0.38 -10.05 6.70 -183.47 -1.23 -11.28 16 29 H 0.25 15.73 6.45 -92.70 -0.60 15.13 16 30 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 31 H 0.07 2.79 7.96 -2.39 -0.02 2.77 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.07 2.39 7.84 -2.39 -0.02 2.38 16 34 H 0.06 2.34 7.83 -2.39 -0.02 2.32 16 35 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.06 2.91 6.54 -2.39 -0.02 2.90 16 37 H -0.02 -0.87 7.59 -2.39 -0.02 -0.89 16 38 H 0.22 2.13 7.59 -2.91 -0.02 2.11 16 39 H 0.21 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -75.15 318.30 2.43 -72.73 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.45 Total: 12.71 kcal Atomic # 6 Polarization: 23.25 SS G_CDS: 6.32 Total: 29.56 kcal Atomic # 7 Polarization: -125.22 SS G_CDS: -6.24 Total: -131.46 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -0.15 Total: -35.30 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 2.06 Total: 51.76 kcal Total: -75.15 2.43 -72.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017858836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.143 kcal (2) G-P(sol) polarization free energy of solvation -75.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds