Wall clock time and date at job start Fri Apr 10 2020 17:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00211 * 2 1 4 4 H 1.48499 * 109.46634 * 269.99810 * 3 2 1 5 5 H 1.48506 * 109.47036 * 29.99660 * 3 2 1 6 6 H 1.48494 * 109.47259 * 149.99855 * 3 2 1 7 7 C 1.38807 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00313 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00052 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99840 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.78209 * 36.78367 * 10 9 7 12 12 C 1.55158 * 110.72131 * 160.02649 * 10 9 7 13 13 C 1.54905 * 101.58325 * 153.86250 * 12 10 9 14 14 N 1.47418 * 104.83346 * 322.98715 * 13 12 10 15 15 C 1.34781 * 125.65102 * 204.09067 * 14 13 12 16 16 O 1.21529 * 120.00200 * 174.15587 * 15 14 13 17 17 C 1.48004 * 119.99590 * 354.16145 * 15 14 13 18 18 C 1.39865 * 120.46621 * 342.18295 * 17 15 14 19 19 C 1.38451 * 118.35892 * 179.76169 * 18 17 15 20 20 C 1.39300 * 119.19037 * 0.51992 * 19 18 17 21 21 C 1.48337 * 119.57174 * 179.74410 * 20 19 18 22 22 N 1.34777 * 119.99910 * 179.97438 * 21 20 19 23 23 O 1.21492 * 119.99898 * 359.97438 * 21 20 19 24 24 N 1.32715 * 120.85352 * 359.72080 * 20 19 18 25 25 C 1.31412 * 121.80733 * 0.02562 * 24 20 19 26 26 C 1.47027 * 108.70489 * 24.13148 * 14 13 12 27 27 H 0.97003 * 119.99635 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99992 * 359.97438 * 9 7 2 29 29 H 1.09004 * 111.00517 * 35.78350 * 12 10 9 30 30 H 1.09004 * 111.00196 * 271.94106 * 12 10 9 31 31 H 1.09007 * 110.36420 * 204.15193 * 13 12 10 32 32 H 1.08996 * 110.36759 * 81.82791 * 13 12 10 33 33 H 1.08006 * 120.81872 * 0.02562 * 18 17 15 34 34 H 1.08005 * 120.40284 * 180.28228 * 19 18 17 35 35 H 0.97001 * 120.00039 * 0.02562 * 22 21 20 36 36 H 0.96999 * 120.00155 * 179.97438 * 22 21 20 37 37 H 1.08000 * 119.64761 * 180.02562 * 25 24 20 38 38 H 1.08998 * 109.88205 * 118.35507 * 26 14 13 39 39 H 1.08999 * 109.88267 * 239.52417 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9577 -3.5834 0.6125 12 6 1.1509 -4.8140 0.4972 13 6 1.8013 -6.0374 -0.1953 14 7 2.2239 -5.5420 -1.5179 15 6 2.4104 -6.2988 -2.6174 16 8 2.6573 -5.7708 -3.6838 17 6 2.3142 -7.7729 -2.5261 18 6 2.4026 -8.4139 -1.2861 19 6 2.3020 -9.7943 -1.2507 20 6 2.1285 -10.4936 -2.4429 21 6 2.0254 -11.9731 -2.4154 22 7 1.8570 -12.6584 -3.5637 23 8 2.0928 -12.5672 -1.3578 24 7 2.0538 -9.8533 -3.6030 25 6 2.1398 -8.5441 -3.6782 26 6 2.4094 -4.0856 -1.4386 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 0.0005 29 1 0.1230 -4.6758 0.1617 30 1 1.1966 -4.9090 1.5821 31 1 1.0739 -6.8417 -0.3062 32 1 2.6645 -6.3814 0.3745 33 1 2.5416 -7.8457 -0.3782 34 1 2.3611 -10.3227 -0.3107 35 1 1.8035 -12.1841 -4.4082 36 1 1.7899 -13.6259 -3.5458 37 1 2.0741 -8.0589 -4.6409 38 1 3.4462 -3.8314 -1.6585 39 1 1.7455 -3.5884 -2.1458 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019868874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:54 Heat of formation + Delta-G solvation = -4.689232 kcal Electronic energy + Delta-G solvation = -23791.747456 eV Core-core repulsion = 20121.195760 eV Total energy + Delta-G solvation = -3670.551696 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.22475 -39.92915 -38.81794 -37.40647 -34.55414 -34.15197 -32.97109 -31.92195 -31.37762 -29.79474 -27.82391 -26.01282 -24.20541 -23.77533 -22.90048 -21.41906 -20.54880 -19.74162 -18.57160 -17.76741 -17.47990 -16.97929 -16.41610 -16.25504 -15.79160 -15.46197 -15.14842 -14.72609 -14.55666 -14.18860 -13.86126 -13.63572 -13.54757 -13.28532 -13.15623 -12.81371 -12.55383 -12.02763 -11.58463 -11.24334 -10.90061 -10.86734 -10.79767 -10.55502 -10.32794 -10.28477 -10.12789 -10.09497 -9.83794 -9.80310 -9.59920 -9.06473 -8.53055 -7.15774 -5.89321 -3.20821 -0.07019 0.76700 2.10908 2.83841 2.89079 2.98394 3.38106 3.43639 3.44767 3.53075 3.77036 4.23057 4.35944 4.43473 4.49555 4.54699 4.74284 4.77541 5.05531 5.16413 5.28783 5.32542 5.50059 5.53466 5.57087 5.61157 5.79996 5.98292 6.05204 6.17200 6.23635 6.30826 6.35804 6.53687 6.77641 6.82965 7.26346 7.53118 7.59893 7.78801 8.08509 8.27916 9.40075 9.92233 10.26686 11.32527 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.039154 B = 0.002583 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.952423 B =10835.933998 C =11244.359409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.251 4.251 8 H 0.073 0.927 9 N -0.712 5.712 10 C 0.172 3.828 11 H 0.067 0.933 12 C -0.142 4.142 13 C 0.090 3.910 14 N -0.603 5.603 15 C 0.567 3.433 16 O -0.531 6.531 17 C -0.149 4.149 18 C -0.066 4.066 19 C -0.116 4.116 20 C 0.086 3.914 21 C 0.579 3.421 22 N -0.834 5.834 23 O -0.534 6.534 24 N -0.463 5.463 25 C 0.155 3.845 26 C 0.081 3.919 27 H 0.257 0.743 28 H 0.387 0.613 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.165 0.835 34 H 0.155 0.845 35 H 0.413 0.587 36 H 0.406 0.594 37 H 0.177 0.823 38 H 0.062 0.938 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.258 -22.842 -3.287 23.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.382 4.382 8 H 0.091 0.909 9 N -0.352 5.352 10 C 0.060 3.940 11 H 0.085 0.915 12 C -0.180 4.180 13 C -0.033 4.033 14 N -0.336 5.336 15 C 0.354 3.646 16 O -0.409 6.409 17 C -0.154 4.154 18 C -0.092 4.092 19 C -0.137 4.137 20 C -0.053 4.053 21 C 0.362 3.638 22 N -0.397 5.397 23 O -0.410 6.410 24 N -0.174 5.174 25 C -0.006 4.006 26 C -0.044 4.044 27 H 0.067 0.933 28 H 0.222 0.778 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.183 0.817 34 H 0.173 0.827 35 H 0.244 0.756 36 H 0.237 0.763 37 H 0.194 0.806 38 H 0.080 0.920 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.449 -23.142 -3.876 23.716 hybrid contribution 0.197 1.278 0.213 1.311 sum 3.646 -21.864 -3.664 22.466 Atomic orbital electron populations 1.69659 1.05194 1.26018 1.56737 1.24784 0.95539 0.97923 1.02190 0.86166 0.78676 0.83516 0.77660 1.21518 1.21679 1.20611 1.19242 0.91124 0.83873 1.43954 0.90887 1.42368 1.05832 0.99381 1.87614 1.21217 0.94897 0.86431 0.91486 0.91470 1.23111 1.00460 0.93933 1.00528 1.22737 0.98575 0.98185 0.83756 1.48474 1.65792 1.09862 1.09433 1.17691 0.78250 0.85290 0.83330 1.90805 1.49157 1.73664 1.27271 1.21293 1.03429 0.95272 0.95421 1.22661 0.93207 0.94535 0.98803 1.22121 0.97668 0.94129 0.99755 1.21265 0.99532 0.94325 0.90131 1.17890 0.75937 0.85890 0.84130 1.43640 1.74997 1.11274 1.09823 1.90841 1.50253 1.69501 1.30382 1.67606 1.12035 1.10641 1.27144 1.22963 0.91218 0.87789 0.98626 1.23380 1.01545 0.76838 1.02603 0.93279 0.77798 0.90237 0.89645 0.90433 0.90726 0.81748 0.82704 0.75636 0.76312 0.80588 0.92004 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.02 13.06 55.49 0.72 -26.30 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.69 29.55 -169.99 -5.02 16.66 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.25 -6.59 9.98 -15.06 -0.15 -6.74 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.71 -16.52 5.18 -51.65 -0.27 -16.78 16 10 C 0.17 3.03 3.59 -66.09 -0.24 2.79 16 11 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 12 C -0.14 -1.88 6.69 -24.58 -0.16 -2.05 16 13 C 0.09 0.97 4.93 -2.54 -0.01 0.96 16 14 N -0.60 -8.69 3.33 -171.57 -0.57 -9.26 16 15 C 0.57 8.47 7.73 -12.25 -0.09 8.37 16 16 O -0.53 -9.81 16.84 5.34 0.09 -9.72 16 17 C -0.15 -1.72 5.79 -104.73 -0.61 -2.33 16 18 C -0.07 -0.61 8.23 -38.89 -0.32 -0.93 16 19 C -0.12 -1.06 9.62 -39.11 -0.38 -1.44 16 20 C 0.09 0.86 6.75 -82.93 -0.56 0.30 16 21 C 0.58 5.71 8.09 -12.10 -0.10 5.62 16 22 N -0.83 -5.27 8.86 30.64 0.27 -5.00 16 23 O -0.53 -6.78 17.15 5.37 0.09 -6.69 16 24 N -0.46 -4.68 9.52 -9.48 -0.09 -4.77 16 25 C 0.15 1.68 10.75 -17.17 -0.18 1.50 16 26 C 0.08 1.43 6.63 -3.06 -0.02 1.41 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.39 9.60 7.71 -40.82 -0.31 9.28 16 29 H 0.08 1.14 8.00 -51.93 -0.42 0.72 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 0.70 6.50 -51.92 -0.34 0.36 16 32 H 0.07 0.63 7.00 -51.93 -0.36 0.26 16 33 H 0.17 1.22 4.11 -52.48 -0.22 1.00 16 34 H 0.16 1.22 7.63 -52.48 -0.40 0.82 16 35 H 0.41 2.10 8.15 -40.82 -0.33 1.77 16 36 H 0.41 1.79 8.93 -40.82 -0.36 1.42 16 37 H 0.18 1.79 7.76 -52.49 -0.41 1.38 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.08 1.60 8.03 -51.93 -0.42 1.18 16 LS Contribution 333.45 15.07 5.03 5.03 Total: -1.00 -33.25 333.45 -7.05 -40.30 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.38 Total: 9.39 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -2.92 Total: 7.15 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: 0.07 Total: -62.11 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.18 Total: -16.42 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.25 -7.05 -40.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019868874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.609 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds