Wall clock time and date at job start Fri Apr 10 2020 17:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00211 * 2 1 4 4 H 1.48499 * 109.46634 * 269.99810 * 3 2 1 5 5 H 1.48506 * 109.47036 * 29.99660 * 3 2 1 6 6 H 1.48494 * 109.47259 * 149.99855 * 3 2 1 7 7 C 1.38807 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00313 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00052 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99840 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.78209 * 36.78367 * 10 9 7 12 12 C 1.55158 * 110.72131 * 160.02649 * 10 9 7 13 13 C 1.54905 * 101.58325 * 153.86250 * 12 10 9 14 14 N 1.47418 * 104.83346 * 322.98715 * 13 12 10 15 15 C 1.34781 * 125.65102 * 204.09067 * 14 13 12 16 16 O 1.21529 * 120.00200 * 174.15587 * 15 14 13 17 17 C 1.48004 * 119.99590 * 354.16145 * 15 14 13 18 18 C 1.39865 * 120.46621 * 342.18295 * 17 15 14 19 19 C 1.38451 * 118.35892 * 179.76169 * 18 17 15 20 20 C 1.39300 * 119.19037 * 0.51992 * 19 18 17 21 21 C 1.48337 * 119.57174 * 179.74410 * 20 19 18 22 22 N 1.34777 * 119.99910 * 179.97438 * 21 20 19 23 23 O 1.21492 * 119.99898 * 359.97438 * 21 20 19 24 24 N 1.32715 * 120.85352 * 359.72080 * 20 19 18 25 25 C 1.31412 * 121.80733 * 0.02562 * 24 20 19 26 26 C 1.47027 * 108.70489 * 24.13148 * 14 13 12 27 27 H 0.97003 * 119.99635 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99992 * 359.97438 * 9 7 2 29 29 H 1.09004 * 111.00517 * 35.78350 * 12 10 9 30 30 H 1.09004 * 111.00196 * 271.94106 * 12 10 9 31 31 H 1.09007 * 110.36420 * 204.15193 * 13 12 10 32 32 H 1.08996 * 110.36759 * 81.82791 * 13 12 10 33 33 H 1.08006 * 120.81872 * 0.02562 * 18 17 15 34 34 H 1.08005 * 120.40284 * 180.28228 * 19 18 17 35 35 H 0.97001 * 120.00039 * 0.02562 * 22 21 20 36 36 H 0.96999 * 120.00155 * 179.97438 * 22 21 20 37 37 H 1.08000 * 119.64761 * 180.02562 * 25 24 20 38 38 H 1.08998 * 109.88205 * 118.35507 * 26 14 13 39 39 H 1.08999 * 109.88267 * 239.52417 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9577 -3.5834 0.6125 12 6 1.1509 -4.8140 0.4972 13 6 1.8013 -6.0374 -0.1953 14 7 2.2239 -5.5420 -1.5179 15 6 2.4104 -6.2988 -2.6174 16 8 2.6573 -5.7708 -3.6838 17 6 2.3142 -7.7729 -2.5261 18 6 2.4026 -8.4139 -1.2861 19 6 2.3020 -9.7943 -1.2507 20 6 2.1285 -10.4936 -2.4429 21 6 2.0254 -11.9731 -2.4154 22 7 1.8570 -12.6584 -3.5637 23 8 2.0928 -12.5672 -1.3578 24 7 2.0538 -9.8533 -3.6030 25 6 2.1398 -8.5441 -3.6782 26 6 2.4094 -4.0856 -1.4386 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 0.0005 29 1 0.1230 -4.6758 0.1617 30 1 1.1966 -4.9090 1.5821 31 1 1.0739 -6.8417 -0.3062 32 1 2.6645 -6.3814 0.3745 33 1 2.5416 -7.8457 -0.3782 34 1 2.3611 -10.3227 -0.3107 35 1 1.8035 -12.1841 -4.4082 36 1 1.7899 -13.6259 -3.5458 37 1 2.0741 -8.0589 -4.6409 38 1 3.4462 -3.8314 -1.6585 39 1 1.7455 -3.5884 -2.1458 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019868874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:53 Heat of formation + Delta-G solvation = -31.560275 kcal Electronic energy + Delta-G solvation = -23792.912672 eV Core-core repulsion = 20121.195760 eV Total energy + Delta-G solvation = -3671.716912 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.10676 -40.94103 -39.70791 -38.68949 -36.08141 -35.01069 -34.00272 -33.08648 -32.57827 -31.15257 -29.23614 -27.02998 -25.74505 -24.68777 -24.15507 -22.21212 -21.80639 -20.95012 -19.36533 -19.22898 -18.59949 -18.06721 -17.58001 -17.13440 -16.84361 -16.52829 -16.21393 -15.98425 -15.53953 -15.33512 -15.28131 -14.95248 -14.57237 -14.40185 -14.28418 -14.11141 -13.61376 -13.39728 -13.09800 -12.89874 -12.45451 -12.37158 -12.12892 -11.75038 -11.67309 -11.64903 -11.38809 -11.09547 -11.01965 -10.78829 -10.73100 -10.43457 -9.74384 -9.09667 -7.97202 -5.27086 -0.90295 0.01534 1.23752 1.48059 1.49737 1.57345 1.74894 1.90310 2.24696 2.55295 2.69858 3.01454 3.26540 3.37411 3.54661 3.67161 3.72330 3.83182 3.90184 3.93341 4.14814 4.29856 4.34397 4.49782 4.57890 4.61320 4.74987 4.80961 4.87701 4.97691 5.13354 5.21220 5.31869 5.37517 5.52896 5.75094 6.17946 6.24714 6.37916 6.53492 6.91776 7.16079 7.31875 8.04450 8.26372 9.25643 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.039154 B = 0.002583 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.952423 B =10835.933998 C =11244.359409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.969 3.031 4 H -0.292 1.292 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.244 4.244 8 H 0.079 0.921 9 N -0.726 5.726 10 C 0.165 3.835 11 H 0.077 0.923 12 C -0.132 4.132 13 C 0.091 3.909 14 N -0.603 5.603 15 C 0.566 3.434 16 O -0.578 6.578 17 C -0.160 4.160 18 C -0.049 4.049 19 C -0.112 4.112 20 C 0.080 3.920 21 C 0.576 3.424 22 N -0.815 5.815 23 O -0.565 6.565 24 N -0.461 5.461 25 C 0.151 3.849 26 C 0.093 3.907 27 H 0.251 0.749 28 H 0.376 0.624 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.189 0.811 34 H 0.173 0.827 35 H 0.421 0.579 36 H 0.417 0.583 37 H 0.176 0.824 38 H 0.053 0.947 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.207 -25.154 -2.090 25.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.799 3.201 4 H -0.220 1.220 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.376 4.376 8 H 0.097 0.903 9 N -0.365 5.365 10 C 0.054 3.946 11 H 0.095 0.905 12 C -0.170 4.170 13 C -0.030 4.030 14 N -0.335 5.335 15 C 0.355 3.645 16 O -0.459 6.459 17 C -0.165 4.165 18 C -0.074 4.074 19 C -0.132 4.132 20 C -0.058 4.058 21 C 0.359 3.641 22 N -0.379 5.379 23 O -0.444 6.444 24 N -0.172 5.172 25 C -0.010 4.010 26 C -0.033 4.033 27 H 0.060 0.940 28 H 0.209 0.791 29 H 0.084 0.916 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.206 0.794 34 H 0.190 0.810 35 H 0.253 0.747 36 H 0.250 0.750 37 H 0.193 0.807 38 H 0.071 0.929 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.428 -25.529 -2.689 26.050 hybrid contribution -0.072 1.846 -0.220 1.860 sum 4.356 -23.684 -2.909 24.256 Atomic orbital electron populations 1.69803 1.06575 1.26127 1.59192 1.25544 0.96329 1.01095 1.03502 0.85202 0.77963 0.79756 0.77212 1.21965 1.22240 1.19062 1.19637 0.91582 0.85078 1.41307 0.90270 1.42541 1.05527 1.00668 1.87738 1.21461 0.95889 0.85717 0.91509 0.90471 1.23061 0.98873 0.92805 1.02273 1.23072 1.00651 0.97568 0.81691 1.48475 1.65620 1.08394 1.10992 1.18181 0.77099 0.86640 0.82544 1.90778 1.51281 1.74824 1.29046 1.20994 1.05804 0.92892 0.96855 1.22829 0.91548 0.94579 0.98464 1.22328 0.96758 0.93986 1.00149 1.21512 0.99083 0.94682 0.90541 1.17915 0.75918 0.85844 0.84413 1.43548 1.73065 1.11964 1.09273 1.90831 1.52131 1.69915 1.31516 1.67623 1.12218 1.10066 1.27327 1.22995 0.91224 0.88078 0.98679 1.22902 0.99905 0.79059 1.01438 0.93995 0.79141 0.91563 0.87048 0.87628 0.86788 0.79395 0.80950 0.74726 0.75020 0.80690 0.92892 0.94486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.67 13.06 21.65 0.28 -57.38 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.97 45.12 29.55 68.60 2.03 47.14 16 4 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.24 -12.90 9.98 84.03 0.84 -12.06 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.73 -33.99 5.18 -317.32 -1.64 -35.64 16 10 C 0.16 5.64 3.59 46.18 0.17 5.80 16 11 H 0.08 2.52 8.12 -2.39 -0.02 2.50 16 12 C -0.13 -3.17 6.69 31.99 0.21 -2.95 16 13 C 0.09 1.62 4.93 86.85 0.43 2.05 16 14 N -0.60 -16.53 3.33 -815.01 -2.71 -19.24 16 15 C 0.57 16.50 7.73 86.83 0.67 17.17 16 16 O -0.58 -21.89 16.84 -3.81 -0.06 -21.95 16 17 C -0.16 -3.39 5.79 -19.93 -0.12 -3.51 16 18 C -0.05 -0.72 8.23 22.71 0.19 -0.54 16 19 C -0.11 -1.66 9.62 22.58 0.22 -1.45 16 20 C 0.08 1.41 6.75 41.96 0.28 1.69 16 21 C 0.58 10.10 8.09 86.93 0.70 10.81 16 22 N -0.81 -8.51 8.86 -175.27 -1.55 -10.06 16 23 O -0.57 -13.21 17.15 -3.69 -0.06 -13.27 16 24 N -0.46 -8.46 9.52 -183.90 -1.75 -10.21 16 25 C 0.15 3.10 10.75 85.12 0.92 4.01 16 26 C 0.09 3.29 6.63 86.73 0.57 3.86 16 27 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 28 H 0.38 19.08 7.71 -92.71 -0.72 18.37 16 29 H 0.07 1.80 8.00 -2.38 -0.02 1.78 16 30 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 31 H 0.11 1.39 6.50 -2.38 -0.02 1.37 16 32 H 0.11 1.24 7.00 -2.39 -0.02 1.23 16 33 H 0.19 1.79 4.11 -2.91 -0.01 1.78 16 34 H 0.17 2.03 7.63 -2.91 -0.02 2.01 16 35 H 0.42 3.36 8.15 -92.71 -0.76 2.60 16 36 H 0.42 2.75 8.93 -92.71 -0.83 1.92 16 37 H 0.18 3.54 7.76 -2.91 -0.02 3.52 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.04 1.60 8.03 -2.39 -0.02 1.58 16 Total: -1.00 -74.68 333.45 -1.08 -75.76 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: -1.16 Total: 23.52 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 5.55 Total: 21.34 kcal Atomic # 7 Polarization: -125.16 SS G_CDS: -7.37 Total: -132.54 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -0.13 Total: -35.23 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -74.68 -1.08 -75.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019868874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.197 kcal (2) G-P(sol) polarization free energy of solvation -74.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds