Wall clock time and date at job start Fri Apr 10 2020 17:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.36358 * 125.83966 * 126.27724 * 3 2 1 5 5 C 1.41428 * 107.01157 * 179.97438 * 4 3 2 6 6 C 1.47374 * 126.47147 * 179.97438 * 5 4 3 7 7 O 1.21615 * 119.99671 * 0.02562 * 6 5 4 8 8 N 1.34770 * 119.99989 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99907 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.45519 * 35.03497 * 9 8 6 11 11 C 1.53035 * 109.46261 * 275.07575 * 9 8 6 12 12 C 1.53190 * 109.31499 * 178.61214 * 11 9 8 13 13 N 1.46933 * 108.77252 * 54.63169 * 12 11 9 14 14 C 1.36938 * 120.62732 * 126.41560 * 13 12 11 15 15 H 1.07998 * 119.99701 * 207.66166 * 14 13 12 16 16 C 1.38817 * 120.00097 * 27.66480 * 14 13 12 17 17 N 1.31614 * 120.00370 * 17.36286 * 16 14 13 18 18 Si 1.86803 * 119.99482 * 197.36633 * 16 14 13 19 19 H 1.48494 * 109.47232 * 60.00208 * 18 16 14 20 20 H 1.48506 * 109.46559 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47429 * 299.99449 * 18 16 14 22 22 C 1.46916 * 118.74200 * 306.39116 * 13 12 11 23 23 C 1.53036 * 109.46161 * 155.00169 * 9 8 6 24 24 H 1.08998 * 109.49653 * 61.40533 * 23 9 8 25 25 O 1.42904 * 109.49995 * 301.34168 * 23 9 8 26 26 C 1.38131 * 107.06205 * 0.26804 * 5 4 3 27 27 N 1.34428 * 108.38639 * 359.56363 * 26 5 4 28 28 H 0.97004 * 125.38778 * 180.20111 * 27 26 5 29 29 H 1.07998 * 126.49657 * 0.02576 * 4 3 2 30 30 H 0.97002 * 120.00349 * 359.73218 * 8 6 5 31 31 H 1.09002 * 109.49642 * 298.56486 * 11 9 8 32 32 H 1.09001 * 109.50258 * 58.65567 * 11 9 8 33 33 H 1.09001 * 109.58686 * 294.84831 * 12 11 9 34 34 H 1.08996 * 109.59099 * 174.41830 * 12 11 9 35 35 H 0.96995 * 120.00245 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.58664 * 293.82527 * 22 13 12 37 37 H 1.08998 * 109.70696 * 173.46794 * 22 13 12 38 38 H 0.96701 * 114.00066 * 179.97438 * 25 23 9 39 39 H 1.08003 * 125.80543 * 179.71519 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3661 0.6551 -0.8911 5 6 4.7048 0.3861 -0.5228 6 6 5.9162 0.8828 -1.1994 7 8 5.8162 1.5996 -2.1767 8 7 7.1348 0.5427 -0.7350 9 6 8.3391 1.0369 -1.4072 10 1 8.1579 2.0442 -1.7824 11 6 8.6862 0.1124 -2.5763 12 6 9.9254 0.6514 -3.2978 13 7 11.0078 0.8182 -2.3182 14 6 12.2327 0.2427 -2.5273 15 1 12.8535 -0.0265 -1.6856 16 6 12.6764 0.0054 -3.8210 17 7 12.1075 0.6217 -4.8353 18 14 14.0809 -1.1887 -4.1223 19 1 13.7031 -2.5342 -3.6203 20 1 14.3617 -1.2652 -5.5786 21 1 15.2941 -0.7165 -3.4080 22 6 10.7512 1.6145 -1.1105 23 6 9.5026 1.0647 -0.4136 24 1 9.7002 0.0540 -0.0564 25 8 9.1653 1.9040 0.6927 26 6 4.6626 -0.4356 0.5868 27 7 3.3746 -0.6591 0.9001 28 1 3.0628 -1.2022 1.6409 29 1 3.0381 1.2641 -1.7205 30 1 7.2146 -0.0259 0.0469 31 1 8.8918 -0.8894 -2.1992 32 1 7.8478 0.0748 -3.2718 33 1 9.6932 1.6141 -3.7532 34 1 10.2355 -0.0543 -4.0684 35 1 12.4173 0.4557 -5.7393 36 1 10.5863 2.6557 -1.3876 37 1 11.6055 1.5465 -0.4370 38 1 9.8587 1.9680 1.3637 39 1 5.5188 -0.8293 1.1144 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090195636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:48 Heat of formation + Delta-G solvation = 15.349361 kcal Electronic energy + Delta-G solvation = -24170.069145 eV Core-core repulsion = 20500.386388 eV Total energy + Delta-G solvation = -3669.682757 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.80502 -39.42779 -37.76641 -36.79724 -35.40574 -34.26637 -32.16807 -31.64184 -30.46565 -29.57899 -28.45592 -25.32949 -23.35769 -22.87171 -22.28458 -21.45947 -20.40035 -19.85386 -19.07860 -17.15401 -16.65758 -16.52047 -16.16504 -15.62400 -15.41684 -14.84165 -14.50662 -14.29613 -14.09733 -13.90918 -13.59835 -13.41605 -13.32285 -13.15844 -12.89709 -12.77390 -12.52462 -12.25960 -12.03983 -11.56047 -11.11434 -10.86575 -10.66901 -10.33858 -10.26950 -9.95564 -9.85137 -9.72236 -9.48398 -9.43774 -8.80650 -8.65505 -8.42786 -6.77490 -5.84950 -3.29049 0.99666 1.64867 1.89627 2.76260 3.04219 3.33202 3.36306 3.41071 3.41717 3.62161 3.73615 4.36765 4.50972 4.53166 4.66853 4.94734 5.29044 5.31607 5.44152 5.50760 5.56322 5.61606 5.77842 5.98449 6.11351 6.15115 6.25725 6.34421 6.48526 6.55820 6.69041 6.72586 6.78270 6.90998 7.06132 7.30440 7.61828 7.72506 7.81256 7.90896 8.37636 8.53372 9.13085 9.75625 10.31400 11.23528 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.028286 B = 0.002880 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.636317 B = 9719.217188 C =10060.014895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C 0.282 3.718 3 C 0.039 3.961 4 C -0.047 4.047 5 C -0.215 4.215 6 C 0.584 3.416 7 O -0.540 6.540 8 N -0.713 5.713 9 C 0.164 3.836 10 H 0.089 0.911 11 C -0.146 4.146 12 C 0.170 3.830 13 N -0.588 5.588 14 C -0.260 4.260 15 H 0.066 0.934 16 C 0.006 3.994 17 N -0.898 5.898 18 Si 0.904 3.096 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.121 3.879 23 C 0.080 3.920 24 H 0.056 0.944 25 O -0.571 6.571 26 C 0.082 3.918 27 N -0.521 5.521 28 H 0.425 0.575 29 H 0.161 0.839 30 H 0.392 0.608 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.024 0.976 34 H 0.093 0.907 35 H 0.256 0.744 36 H 0.029 0.971 37 H 0.059 0.941 38 H 0.373 0.627 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.610 -4.146 14.161 19.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.085 5.085 2 C -0.034 4.034 3 C -0.073 4.073 4 C -0.075 4.075 5 C -0.225 4.225 6 C 0.371 3.629 7 O -0.418 6.418 8 N -0.362 5.362 9 C 0.060 3.940 10 H 0.107 0.893 11 C -0.187 4.187 12 C 0.044 3.956 13 N -0.312 5.312 14 C -0.390 4.390 15 H 0.084 0.916 16 C -0.194 4.194 17 N -0.542 5.542 18 Si 0.734 3.266 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.209 1.209 22 C -0.007 4.007 23 C 0.019 3.981 24 H 0.074 0.926 25 O -0.375 6.375 26 C -0.059 4.059 27 N -0.115 5.115 28 H 0.264 0.736 29 H 0.179 0.821 30 H 0.226 0.774 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.111 0.889 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.078 0.922 38 H 0.219 0.781 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -15.019 -3.637 13.032 20.215 hybrid contribution 1.656 -1.253 0.885 2.257 sum -13.363 -4.890 13.917 19.904 Atomic orbital electron populations 1.81329 1.11274 1.08741 1.07178 1.24288 0.90802 0.93880 0.94404 1.15151 0.83257 1.09580 0.99279 1.21138 0.90441 0.98011 0.97939 1.19784 0.94210 1.07778 1.00738 1.17289 0.82193 0.80038 0.83395 1.90805 1.86731 1.37590 1.26656 1.45902 1.05510 1.52380 1.32422 1.20994 0.81601 0.99515 0.91852 0.89319 1.22600 1.00676 0.98692 0.96698 1.20845 0.83853 0.99392 0.91493 1.44041 1.10030 1.57329 1.19816 1.19105 0.94600 1.33667 0.91607 0.91607 1.25066 0.98304 0.99641 0.96374 1.70021 1.43714 1.41664 0.98785 0.86354 0.82008 0.81339 0.76941 1.20981 1.21567 1.20852 1.21519 0.94040 0.94557 0.90604 1.22778 0.95804 0.93175 0.86329 0.92645 1.86489 1.45686 1.71298 1.34028 1.22532 0.86174 0.99491 0.97750 1.41535 1.05671 1.39315 1.24972 0.73631 0.82146 0.77427 0.92384 0.91765 0.95764 0.88884 0.93352 0.95309 0.92239 0.78069 0.79582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.68 18.54 41.84 0.78 -3.90 16 2 C 0.28 2.62 15.88 -22.47 -0.36 2.26 16 3 C 0.04 0.31 6.90 -83.98 -0.58 -0.27 16 4 C -0.05 -0.47 10.59 -39.05 -0.41 -0.88 16 5 C -0.22 -2.24 6.13 -105.00 -0.64 -2.88 16 6 C 0.58 8.48 7.78 -12.55 -0.10 8.38 16 7 O -0.54 -10.26 16.58 5.26 0.09 -10.17 16 8 N -0.71 -9.54 4.91 -54.86 -0.27 -9.81 16 9 C 0.16 2.78 2.12 -67.89 -0.14 2.64 16 10 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 11 C -0.15 -2.75 5.65 -26.62 -0.15 -2.90 16 12 C 0.17 3.96 5.31 -3.71 -0.02 3.94 16 13 N -0.59 -13.97 2.99 -172.32 -0.52 -14.49 16 14 C -0.26 -6.79 9.59 -15.06 -0.14 -6.93 16 15 H 0.07 1.66 7.89 -52.49 -0.41 1.25 16 16 C 0.01 0.15 4.91 -17.43 -0.09 0.06 16 17 N -0.90 -25.45 11.19 55.49 0.62 -24.82 16 18 Si 0.90 20.89 29.59 -169.99 -5.03 15.86 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.12 2.35 6.14 -3.71 -0.02 2.32 16 23 C 0.08 1.26 3.14 -26.61 -0.08 1.18 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 O -0.57 -7.78 13.16 -35.23 -0.46 -8.25 16 26 C 0.08 0.50 11.43 -16.45 -0.19 0.31 16 27 N -0.52 -2.61 6.02 -10.29 -0.06 -2.68 16 28 H 0.43 0.72 8.96 -40.82 -0.37 0.35 16 29 H 0.16 1.60 8.06 -52.49 -0.42 1.17 16 30 H 0.39 3.91 7.51 -40.82 -0.31 3.60 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 2.42 6.04 -51.93 -0.31 2.10 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 1.09 7.94 -51.93 -0.41 0.67 16 38 H 0.37 3.54 9.08 45.56 0.41 3.95 16 39 H 0.19 0.48 7.44 -52.48 -0.39 0.09 16 LS Contribution 339.37 15.07 5.11 5.11 Total: -1.00 -34.40 339.37 -6.53 -40.92 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -3.85 Total: 4.99 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -2.93 Total: 7.23 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.55 Total: -55.70 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.38 Total: -18.42 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.40 -6.53 -40.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090195636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.274 kcal (2) G-P(sol) polarization free energy of solvation -34.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds