Wall clock time and date at job start Fri Apr 10 2020 17:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.36358 * 125.83966 * 126.27724 * 3 2 1 5 5 C 1.41428 * 107.01157 * 179.97438 * 4 3 2 6 6 C 1.47374 * 126.47147 * 179.97438 * 5 4 3 7 7 O 1.21615 * 119.99671 * 0.02562 * 6 5 4 8 8 N 1.34770 * 119.99989 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99907 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.45519 * 35.03497 * 9 8 6 11 11 C 1.53035 * 109.46261 * 275.07575 * 9 8 6 12 12 C 1.53190 * 109.31499 * 178.61214 * 11 9 8 13 13 N 1.46933 * 108.77252 * 54.63169 * 12 11 9 14 14 C 1.36938 * 120.62732 * 126.41560 * 13 12 11 15 15 H 1.07998 * 119.99701 * 207.66166 * 14 13 12 16 16 C 1.38817 * 120.00097 * 27.66480 * 14 13 12 17 17 N 1.31614 * 120.00370 * 17.36286 * 16 14 13 18 18 Si 1.86803 * 119.99482 * 197.36633 * 16 14 13 19 19 H 1.48494 * 109.47232 * 60.00208 * 18 16 14 20 20 H 1.48506 * 109.46559 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47429 * 299.99449 * 18 16 14 22 22 C 1.46916 * 118.74200 * 306.39116 * 13 12 11 23 23 C 1.53036 * 109.46161 * 155.00169 * 9 8 6 24 24 H 1.08998 * 109.49653 * 61.40533 * 23 9 8 25 25 O 1.42904 * 109.49995 * 301.34168 * 23 9 8 26 26 C 1.38131 * 107.06205 * 0.26804 * 5 4 3 27 27 N 1.34428 * 108.38639 * 359.56363 * 26 5 4 28 28 H 0.97004 * 125.38778 * 180.20111 * 27 26 5 29 29 H 1.07998 * 126.49657 * 0.02576 * 4 3 2 30 30 H 0.97002 * 120.00349 * 359.73218 * 8 6 5 31 31 H 1.09002 * 109.49642 * 298.56486 * 11 9 8 32 32 H 1.09001 * 109.50258 * 58.65567 * 11 9 8 33 33 H 1.09001 * 109.58686 * 294.84831 * 12 11 9 34 34 H 1.08996 * 109.59099 * 174.41830 * 12 11 9 35 35 H 0.96995 * 120.00245 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.58664 * 293.82527 * 22 13 12 37 37 H 1.08998 * 109.70696 * 173.46794 * 22 13 12 38 38 H 0.96701 * 114.00066 * 179.97438 * 25 23 9 39 39 H 1.08003 * 125.80543 * 179.71519 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3661 0.6551 -0.8911 5 6 4.7048 0.3861 -0.5228 6 6 5.9162 0.8828 -1.1994 7 8 5.8162 1.5996 -2.1767 8 7 7.1348 0.5427 -0.7350 9 6 8.3391 1.0369 -1.4072 10 1 8.1579 2.0442 -1.7824 11 6 8.6862 0.1124 -2.5763 12 6 9.9254 0.6514 -3.2978 13 7 11.0078 0.8182 -2.3182 14 6 12.2327 0.2427 -2.5273 15 1 12.8535 -0.0265 -1.6856 16 6 12.6764 0.0054 -3.8210 17 7 12.1075 0.6217 -4.8353 18 14 14.0809 -1.1887 -4.1223 19 1 13.7031 -2.5342 -3.6203 20 1 14.3617 -1.2652 -5.5786 21 1 15.2941 -0.7165 -3.4080 22 6 10.7512 1.6145 -1.1105 23 6 9.5026 1.0647 -0.4136 24 1 9.7002 0.0540 -0.0564 25 8 9.1653 1.9040 0.6927 26 6 4.6626 -0.4356 0.5868 27 7 3.3746 -0.6591 0.9001 28 1 3.0628 -1.2022 1.6409 29 1 3.0381 1.2641 -1.7205 30 1 7.2146 -0.0259 0.0469 31 1 8.8918 -0.8894 -2.1992 32 1 7.8478 0.0748 -3.2718 33 1 9.6932 1.6141 -3.7532 34 1 10.2355 -0.0543 -4.0684 35 1 12.4173 0.4557 -5.7393 36 1 10.5863 2.6557 -1.3876 37 1 11.6055 1.5465 -0.4370 38 1 9.8587 1.9680 1.3637 39 1 5.5188 -0.8293 1.1144 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090195636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:48 Heat of formation + Delta-G solvation = -12.635110 kcal Electronic energy + Delta-G solvation = -24171.282643 eV Core-core repulsion = 20500.386388 eV Total energy + Delta-G solvation = -3670.896255 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.46660 -40.68201 -39.11784 -37.59911 -36.89081 -35.63074 -33.77655 -32.56644 -31.72267 -30.71582 -29.91478 -27.04471 -24.66344 -23.77586 -23.52903 -22.91775 -21.25858 -21.00652 -20.30403 -18.80910 -17.91959 -17.42129 -17.35563 -16.76145 -16.51505 -16.18293 -15.63074 -15.48822 -15.43416 -15.21079 -14.84972 -14.76516 -14.40720 -14.15253 -14.03447 -13.79224 -13.66808 -13.48814 -13.26464 -13.19550 -12.92035 -12.63796 -12.31561 -12.07972 -11.99808 -11.82443 -11.32061 -11.01544 -10.84896 -10.50441 -10.22370 -9.87960 -9.36404 -8.71563 -7.85667 -5.32828 0.36801 0.83291 1.23328 1.51818 1.54238 1.60981 2.10770 2.29499 2.30525 2.53349 2.64408 3.06824 3.22548 3.31855 3.70299 3.87135 3.98170 4.16603 4.17020 4.26573 4.32185 4.48696 4.61641 4.64485 4.81838 4.93305 4.95325 5.07808 5.13610 5.20652 5.40371 5.46160 5.57612 5.62413 5.66234 5.72071 6.26052 6.38451 6.42763 6.80266 6.98568 7.14654 7.48165 7.83585 8.36004 9.21387 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.028286 B = 0.002880 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.636317 B = 9719.217188 C =10060.014895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.305 3.695 3 C 0.040 3.960 4 C -0.061 4.061 5 C -0.255 4.255 6 C 0.582 3.418 7 O -0.598 6.598 8 N -0.697 5.697 9 C 0.171 3.829 10 H 0.051 0.949 11 C -0.128 4.128 12 C 0.178 3.822 13 N -0.603 5.603 14 C -0.263 4.263 15 H 0.079 0.921 16 C -0.053 4.053 17 N -0.938 5.938 18 Si 0.970 3.030 19 H -0.273 1.273 20 H -0.300 1.300 21 H -0.274 1.274 22 C 0.115 3.885 23 C 0.105 3.895 24 H 0.080 0.920 25 O -0.569 6.569 26 C 0.133 3.867 27 N -0.496 5.496 28 H 0.447 0.553 29 H 0.146 0.854 30 H 0.415 0.585 31 H 0.074 0.926 32 H 0.055 0.945 33 H -0.013 1.013 34 H 0.062 0.938 35 H 0.250 0.750 36 H 0.008 0.992 37 H 0.076 0.924 38 H 0.396 0.604 39 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.432 -6.414 18.020 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.010 4.010 3 C -0.071 4.071 4 C -0.090 4.090 5 C -0.264 4.264 6 C 0.372 3.628 7 O -0.480 6.480 8 N -0.347 5.347 9 C 0.066 3.934 10 H 0.069 0.931 11 C -0.168 4.168 12 C 0.052 3.948 13 N -0.328 5.328 14 C -0.393 4.393 15 H 0.096 0.904 16 C -0.248 4.248 17 N -0.584 5.584 18 Si 0.798 3.202 19 H -0.199 1.199 20 H -0.227 1.227 21 H -0.199 1.199 22 C -0.012 4.012 23 C 0.044 3.956 24 H 0.098 0.902 25 O -0.376 6.376 26 C -0.012 4.012 27 N -0.092 5.092 28 H 0.290 0.710 29 H 0.164 0.836 30 H 0.252 0.748 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.005 0.995 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.026 0.974 37 H 0.094 0.906 38 H 0.246 0.754 39 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -14.868 -5.939 17.009 23.359 hybrid contribution 1.607 -0.465 -0.245 1.691 sum -13.261 -6.404 16.763 22.313 Atomic orbital electron populations 1.81354 1.12462 1.10225 1.08606 1.24328 0.90825 0.92682 0.93177 1.14819 0.82517 1.10039 0.99750 1.21123 0.91091 0.98483 0.98295 1.19411 0.92282 1.11279 1.03412 1.17864 0.83325 0.78963 0.82662 1.90780 1.87521 1.40310 1.29412 1.45558 1.04029 1.52403 1.32744 1.20573 0.83723 0.97128 0.91982 0.93093 1.22305 0.97913 0.99550 0.97065 1.20562 0.85853 0.96857 0.91559 1.44259 1.09565 1.58108 1.20875 1.19543 0.95169 1.32684 0.91890 0.90380 1.25885 1.01089 1.01501 0.96342 1.70205 1.45706 1.43622 0.98841 0.85302 0.79345 0.79510 0.76033 1.19909 1.22702 1.19926 1.21722 0.96785 0.93131 0.89526 1.22274 0.92802 0.94252 0.86300 0.90210 1.86463 1.46626 1.70848 1.33698 1.23070 0.87375 0.95743 0.95018 1.41522 1.04963 1.38171 1.24542 0.71022 0.83616 0.74790 0.90746 0.92612 0.99452 0.92012 0.94124 0.97422 0.90588 0.75429 0.74866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.99 18.54 19.00 0.35 -9.64 16 2 C 0.30 5.25 15.88 88.33 1.40 6.65 16 3 C 0.04 0.55 6.90 39.03 0.27 0.82 16 4 C -0.06 -1.17 10.59 22.62 0.24 -0.93 16 5 C -0.25 -4.73 6.13 -20.11 -0.12 -4.85 16 6 C 0.58 16.44 7.78 86.65 0.67 17.12 16 7 O -0.60 -23.70 16.58 -4.08 -0.07 -23.77 16 8 N -0.70 -17.03 4.91 -445.73 -2.19 -19.22 16 9 C 0.17 5.69 2.12 45.01 0.10 5.78 16 10 H 0.05 2.11 7.58 -2.39 -0.02 2.09 16 11 C -0.13 -4.85 5.65 30.67 0.17 -4.67 16 12 C 0.18 8.67 5.31 86.36 0.46 9.13 16 13 N -0.60 -28.88 2.99 -699.11 -2.09 -30.97 16 14 C -0.26 -13.63 9.59 84.03 0.81 -12.83 16 15 H 0.08 3.79 7.89 -2.91 -0.02 3.77 16 16 C -0.05 -2.86 4.91 84.86 0.42 -2.44 16 17 N -0.94 -55.25 11.19 21.65 0.24 -55.01 16 18 Si 0.97 43.14 29.59 68.60 2.03 45.17 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 20 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 C 0.11 4.37 6.14 86.37 0.53 4.90 16 23 C 0.10 3.03 3.14 30.67 0.10 3.13 16 24 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 25 O -0.57 -13.45 13.16 -148.98 -1.96 -15.41 16 26 C 0.13 0.92 11.43 84.27 0.96 1.89 16 27 N -0.50 -2.73 6.02 -186.47 -1.12 -3.85 16 28 H 0.45 -0.89 8.96 -92.70 -0.83 -1.72 16 29 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 30 H 0.41 6.28 7.51 -92.71 -0.70 5.59 16 31 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 33 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 34 H 0.06 3.38 6.04 -2.39 -0.01 3.36 16 35 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 36 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.08 2.61 7.94 -2.39 -0.02 2.59 16 38 H 0.40 5.72 9.08 -74.06 -0.67 5.05 16 39 H 0.24 -0.59 7.44 -2.91 -0.02 -0.62 16 Total: -1.00 -80.94 339.37 0.13 -80.81 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -1.07 Total: 8.21 kcal Atomic # 6 Polarization: 17.69 SS G_CDS: 6.00 Total: 23.69 kcal Atomic # 7 Polarization: -113.88 SS G_CDS: -4.81 Total: -118.69 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -2.03 Total: -39.18 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -80.94 0.13 -80.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090195636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.174 kcal (2) G-P(sol) polarization free energy of solvation -80.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds