Wall clock time and date at job start Fri Apr 10 2020 17:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 120.00007 * 2 1 4 4 H 1.48504 * 109.47328 * 269.99965 * 3 2 1 5 5 H 1.48498 * 109.47304 * 29.99978 * 3 2 1 6 6 H 1.48500 * 109.47452 * 150.00366 * 3 2 1 7 7 C 1.38798 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99728 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00203 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99849 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46993 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99776 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99954 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99993 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.52372 * 34.99862 * 14 13 11 16 16 C 1.53122 * 109.52154 * 274.87298 * 14 13 11 17 17 C 1.53166 * 109.20960 * 297.68786 * 16 14 13 18 18 N 1.46851 * 109.55426 * 300.86034 * 17 16 14 19 19 C 1.46905 * 110.99620 * 185.83642 * 18 17 16 20 20 C 1.52999 * 109.46970 * 52.14696 * 19 18 17 21 21 O 1.42900 * 109.47402 * 62.28290 * 20 19 18 22 22 C 1.46842 * 111.19618 * 61.74660 * 18 17 16 23 23 C 1.53037 * 109.52289 * 298.25316 * 22 18 17 24 24 H 1.09009 * 109.53658 * 299.22406 * 23 22 18 25 25 O 1.42902 * 109.50856 * 179.12452 * 23 22 18 26 26 H 0.97002 * 120.00001 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47125 * 299.99459 * 10 9 7 28 28 H 1.09000 * 109.47255 * 59.99845 * 10 9 7 29 29 H 0.96998 * 120.00175 * 0.02562 * 13 11 10 30 30 H 1.09000 * 109.50277 * 57.69505 * 16 14 13 31 31 H 1.09007 * 109.50072 * 177.80406 * 16 14 13 32 32 H 1.08997 * 109.44539 * 180.83930 * 17 16 14 33 33 H 1.09006 * 109.43551 * 60.88204 * 17 16 14 34 34 H 1.09003 * 109.46788 * 172.13890 * 19 18 17 35 35 H 1.08996 * 109.47405 * 292.14377 * 19 18 17 36 36 H 1.09000 * 109.47309 * 182.28660 * 20 19 18 37 37 H 1.09009 * 109.47176 * 302.28585 * 20 19 18 38 38 H 0.96704 * 113.99706 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.46461 * 178.24415 * 22 18 17 40 40 H 1.09001 * 109.46748 * 58.27044 * 22 18 17 41 41 H 0.96700 * 113.99471 * 60.19417 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7910 -5.5023 -0.0011 13 7 2.8441 -6.3431 -0.0018 14 6 2.3304 -7.7151 -0.0019 15 1 1.4142 -7.7610 -0.5907 16 6 2.0368 -8.1516 1.4362 17 6 3.3397 -8.1429 2.2414 18 7 4.3075 -9.0562 1.6202 19 6 5.5186 -9.1785 2.4426 20 6 5.1266 -9.5352 3.8778 21 8 4.4661 -10.8023 3.8904 22 6 4.6394 -8.6295 0.2549 23 6 3.3768 -8.6533 -0.6095 24 1 2.9788 -9.6675 -0.6458 25 8 3.6961 -8.2185 -1.9328 26 1 -0.4850 0.8401 0.0004 27 1 3.1244 -3.7314 -0.8905 28 1 3.1245 -3.7313 0.8894 29 1 3.8009 -6.1836 -0.0015 30 1 1.3236 -7.4618 1.8875 31 1 1.6181 -9.1580 1.4327 32 1 3.1376 -8.4675 3.2621 33 1 3.7505 -7.1333 2.2558 34 1 6.1569 -9.9624 2.0349 35 1 6.0582 -8.2315 2.4379 36 1 6.0221 -9.5861 4.4971 37 1 4.4555 -8.7717 4.2716 38 1 4.1890 -11.0926 4.7702 39 1 5.3812 -9.3075 -0.1673 40 1 5.0442 -7.6177 0.2788 41 1 4.3546 -8.7683 -2.3792 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099687092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:17 Heat of formation + Delta-G solvation = -125.961240 kcal Electronic energy + Delta-G solvation = -23242.281498 eV Core-core repulsion = 19669.622254 eV Total energy + Delta-G solvation = -3572.659245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.41955 -38.55185 -37.41278 -36.06259 -34.44786 -32.41258 -31.83495 -30.30435 -29.34248 -27.89752 -25.47097 -24.48320 -23.44602 -21.48119 -20.96307 -19.18219 -17.92895 -17.78377 -17.47806 -16.80920 -16.18971 -15.94415 -15.61191 -15.22546 -14.79146 -14.49263 -14.41619 -14.16870 -13.92927 -13.55800 -13.30613 -13.13145 -12.72564 -12.59547 -12.55322 -12.24304 -12.01807 -11.56799 -11.44756 -11.11032 -11.04970 -11.00673 -10.76921 -10.58365 -10.27761 -10.19733 -9.79038 -9.31307 -9.05295 -8.84016 -8.56092 -8.20560 -6.47134 -6.19903 -3.89914 3.06902 3.17293 3.23210 3.28763 3.32565 3.40070 3.77723 3.87989 4.00464 4.22235 4.45812 4.56103 4.70190 4.74478 4.85835 4.95497 5.01369 5.07167 5.15091 5.17626 5.22810 5.29634 5.41131 5.50145 5.55003 5.64248 5.69010 5.79460 5.92853 6.02782 6.06536 6.17683 6.66841 6.70434 6.76173 7.31839 7.41306 7.61120 7.78591 8.36905 8.69559 9.25303 10.87539 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.021031 B = 0.003067 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.046161 B = 9126.050800 C = 9565.600794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.152 4.152 11 C 0.534 3.466 12 O -0.519 6.519 13 N -0.725 5.725 14 C 0.155 3.845 15 H 0.096 0.904 16 C -0.125 4.125 17 C 0.050 3.950 18 N -0.523 5.523 19 C 0.056 3.944 20 C 0.073 3.927 21 O -0.558 6.558 22 C 0.023 3.977 23 C 0.102 3.898 24 H 0.077 0.923 25 O -0.555 6.555 26 H 0.268 0.732 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.394 0.606 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.375 0.625 39 H 0.078 0.922 40 H 0.041 0.959 41 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.388 -21.567 5.334 25.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.303 4.303 11 C 0.320 3.680 12 O -0.393 6.393 13 N -0.379 5.379 14 C 0.049 3.951 15 H 0.114 0.886 16 C -0.164 4.164 17 C -0.078 4.078 18 N -0.249 5.249 19 C -0.072 4.072 20 C -0.005 4.005 21 O -0.362 6.362 22 C -0.106 4.106 23 C 0.043 3.957 24 H 0.095 0.905 25 O -0.360 6.360 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.229 0.771 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.055 0.945 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.221 0.779 39 H 0.096 0.904 40 H 0.059 0.941 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 10.670 -21.738 4.787 24.684 hybrid contribution 3.292 1.725 0.555 3.758 sum 13.962 -20.013 5.342 24.980 Atomic orbital electron populations 1.70020 1.05937 1.27413 1.46924 1.24988 0.95025 0.98999 0.94585 0.86171 0.79382 0.81606 0.78348 1.20271 1.20760 1.19744 1.22873 0.94895 0.91748 1.58851 0.91013 1.85380 1.04940 0.96200 1.96689 1.23523 1.06495 0.95593 1.04705 1.20260 0.86555 0.86220 0.74949 1.90690 1.15304 1.85553 1.47754 1.45950 1.09656 1.04962 1.77322 1.20888 0.97229 0.81010 0.95981 0.88645 1.21978 0.97114 1.02761 0.94506 1.22241 0.92778 0.93976 0.98787 1.61879 1.12002 1.49757 1.01285 1.22148 0.92024 1.00398 0.92658 1.22290 0.95870 0.86126 0.96188 1.86609 1.79346 1.36286 1.34006 1.22815 0.98110 0.99462 0.90165 1.22039 0.93779 0.97921 0.82006 0.90465 1.86657 1.64274 1.57769 1.27257 0.92204 0.89327 0.89548 0.77148 0.89734 0.90012 0.89992 0.94466 0.89926 0.93405 0.93341 0.93136 0.77932 0.90356 0.94108 0.77632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.43 13.22 55.49 0.73 -25.69 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.48 9.50 30.94 0.29 -15.18 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.19 6.16 36.01 0.22 -2.97 16 11 C 0.53 10.37 7.82 -10.98 -0.09 10.28 16 12 O -0.52 -12.03 15.53 5.56 0.09 -11.95 16 13 N -0.72 -10.48 4.17 -53.69 -0.22 -10.71 16 14 C 0.15 1.99 2.51 -67.81 -0.17 1.82 16 15 H 0.10 1.47 7.58 -51.93 -0.39 1.08 16 16 C -0.12 -1.45 5.77 -26.58 -0.15 -1.61 16 17 C 0.05 0.50 4.90 -3.76 -0.02 0.48 16 18 N -0.52 -4.79 4.67 -234.58 -1.10 -5.88 16 19 C 0.06 0.43 5.52 -3.82 -0.02 0.40 16 20 C 0.07 0.50 6.68 37.16 0.25 0.75 16 21 O -0.56 -4.46 13.56 -35.23 -0.48 -4.94 16 22 C 0.02 0.20 4.93 -3.84 -0.02 0.18 16 23 C 0.10 1.01 3.36 -26.65 -0.09 0.92 16 24 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 25 O -0.56 -5.72 13.14 -35.23 -0.46 -6.18 16 26 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 28 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 29 H 0.39 4.91 7.01 -40.82 -0.29 4.63 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 32 H 0.08 0.78 5.79 -51.93 -0.30 0.48 16 33 H 0.04 0.41 7.69 -51.93 -0.40 0.01 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.05 0.34 6.05 -51.92 -0.31 0.03 16 38 H 0.37 1.41 9.12 45.56 0.42 1.82 16 39 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 40 H 0.04 0.36 6.64 -51.93 -0.34 0.02 16 41 H 0.38 2.10 9.08 45.56 0.41 2.51 16 LS Contribution 346.70 15.07 5.22 5.22 Total: -1.00 -36.82 346.70 -7.90 -44.71 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -4.56 Total: 5.55 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 0.11 Total: -2.90 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -0.59 Total: -42.28 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.85 Total: -23.07 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.82 -7.90 -44.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099687092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.247 kcal (2) G-P(sol) polarization free energy of solvation -36.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds