Wall clock time and date at job start Fri Apr 10 2020 17:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 120.00007 * 2 1 4 4 H 1.48504 * 109.47328 * 269.99965 * 3 2 1 5 5 H 1.48498 * 109.47304 * 29.99978 * 3 2 1 6 6 H 1.48500 * 109.47452 * 150.00366 * 3 2 1 7 7 C 1.38798 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99728 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00203 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99849 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46993 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99776 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99954 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99993 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.52372 * 34.99862 * 14 13 11 16 16 C 1.53122 * 109.52154 * 274.87298 * 14 13 11 17 17 C 1.53166 * 109.20960 * 297.68786 * 16 14 13 18 18 N 1.46851 * 109.55426 * 300.86034 * 17 16 14 19 19 C 1.46905 * 110.99620 * 185.83642 * 18 17 16 20 20 C 1.52999 * 109.46970 * 52.14696 * 19 18 17 21 21 O 1.42900 * 109.47402 * 62.28290 * 20 19 18 22 22 C 1.46842 * 111.19618 * 61.74660 * 18 17 16 23 23 C 1.53037 * 109.52289 * 298.25316 * 22 18 17 24 24 H 1.09009 * 109.53658 * 299.22406 * 23 22 18 25 25 O 1.42902 * 109.50856 * 179.12452 * 23 22 18 26 26 H 0.97002 * 120.00001 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47125 * 299.99459 * 10 9 7 28 28 H 1.09000 * 109.47255 * 59.99845 * 10 9 7 29 29 H 0.96998 * 120.00175 * 0.02562 * 13 11 10 30 30 H 1.09000 * 109.50277 * 57.69505 * 16 14 13 31 31 H 1.09007 * 109.50072 * 177.80406 * 16 14 13 32 32 H 1.08997 * 109.44539 * 180.83930 * 17 16 14 33 33 H 1.09006 * 109.43551 * 60.88204 * 17 16 14 34 34 H 1.09003 * 109.46788 * 172.13890 * 19 18 17 35 35 H 1.08996 * 109.47405 * 292.14377 * 19 18 17 36 36 H 1.09000 * 109.47309 * 182.28660 * 20 19 18 37 37 H 1.09009 * 109.47176 * 302.28585 * 20 19 18 38 38 H 0.96704 * 113.99706 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.46461 * 178.24415 * 22 18 17 40 40 H 1.09001 * 109.46748 * 58.27044 * 22 18 17 41 41 H 0.96700 * 113.99471 * 60.19417 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1292 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7910 -5.5023 -0.0011 13 7 2.8441 -6.3431 -0.0018 14 6 2.3304 -7.7151 -0.0019 15 1 1.4142 -7.7610 -0.5907 16 6 2.0368 -8.1516 1.4362 17 6 3.3397 -8.1429 2.2414 18 7 4.3075 -9.0562 1.6202 19 6 5.5186 -9.1785 2.4426 20 6 5.1266 -9.5352 3.8778 21 8 4.4661 -10.8023 3.8904 22 6 4.6394 -8.6295 0.2549 23 6 3.3768 -8.6533 -0.6095 24 1 2.9788 -9.6675 -0.6458 25 8 3.6961 -8.2185 -1.9328 26 1 -0.4850 0.8401 0.0004 27 1 3.1244 -3.7314 -0.8905 28 1 3.1245 -3.7313 0.8894 29 1 3.8009 -6.1836 -0.0015 30 1 1.3236 -7.4618 1.8875 31 1 1.6181 -9.1580 1.4327 32 1 3.1376 -8.4675 3.2621 33 1 3.7505 -7.1333 2.2558 34 1 6.1569 -9.9624 2.0349 35 1 6.0582 -8.2315 2.4379 36 1 6.0221 -9.5861 4.4971 37 1 4.4555 -8.7717 4.2716 38 1 4.1890 -11.0926 4.7702 39 1 5.3812 -9.3075 -0.1673 40 1 5.0442 -7.6177 0.2788 41 1 4.3546 -8.7683 -2.3792 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099687092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:16 Heat of formation + Delta-G solvation = -159.623309 kcal Electronic energy + Delta-G solvation = -23243.741195 eV Core-core repulsion = 19669.622254 eV Total energy + Delta-G solvation = -3574.118941 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47056 -39.78983 -38.12204 -36.76094 -35.57401 -34.59676 -33.01582 -31.04401 -30.65559 -28.89844 -27.66200 -25.25512 -24.27699 -22.38442 -22.07541 -20.25945 -19.90509 -18.37411 -18.22511 -18.11205 -17.19374 -17.11437 -16.89045 -16.54180 -16.38849 -15.93561 -15.46337 -15.18010 -14.91314 -14.76374 -14.46746 -14.24912 -14.03747 -13.64113 -13.54605 -13.23696 -13.17802 -13.02014 -12.90175 -12.64216 -12.44911 -12.33645 -11.76964 -11.75906 -11.45551 -11.15402 -11.03356 -10.88658 -10.77491 -10.29550 -10.12380 -9.28360 -8.68121 -8.35614 -6.14027 1.25295 1.41771 1.45653 1.56359 1.60810 2.23648 2.27529 2.71664 2.98347 3.17835 3.31029 3.45443 3.70373 3.76994 3.92970 4.00593 4.11163 4.17421 4.25549 4.27675 4.29197 4.39180 4.46442 4.50870 4.63572 4.71250 4.76753 4.83301 4.89912 4.97611 5.02344 5.11119 5.40321 5.48129 6.00719 6.03743 6.18617 6.45747 6.87895 6.98590 7.05325 7.22665 8.73722 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.021031 B = 0.003067 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.046161 B = 9126.050800 C = 9565.600794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.147 6.147 10 C -0.128 4.128 11 C 0.535 3.465 12 O -0.564 6.564 13 N -0.699 5.699 14 C 0.148 3.852 15 H 0.065 0.935 16 C -0.119 4.119 17 C 0.057 3.943 18 N -0.528 5.528 19 C 0.052 3.948 20 C 0.072 3.928 21 O -0.580 6.580 22 C 0.027 3.973 23 C 0.113 3.887 24 H 0.088 0.912 25 O -0.575 6.575 26 H 0.272 0.728 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.408 0.592 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.029 0.971 34 H 0.088 0.912 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.391 0.609 39 H 0.102 0.898 40 H 0.039 0.961 41 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.514 -22.194 5.630 28.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.696 4.696 8 H 0.100 0.900 9 S 0.080 5.920 10 C -0.279 4.279 11 C 0.321 3.679 12 O -0.442 6.442 13 N -0.352 5.352 14 C 0.043 3.957 15 H 0.084 0.916 16 C -0.157 4.157 17 C -0.070 4.070 18 N -0.255 5.255 19 C -0.076 4.076 20 C -0.006 4.006 21 O -0.387 6.387 22 C -0.101 4.101 23 C 0.053 3.947 24 H 0.106 0.894 25 O -0.383 6.383 26 H 0.081 0.919 27 H 0.122 0.878 28 H 0.126 0.874 29 H 0.245 0.755 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.047 0.953 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.239 0.761 39 H 0.120 0.880 40 H 0.058 0.942 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 13.859 -22.422 5.088 26.846 hybrid contribution 2.354 1.758 0.453 2.973 sum 16.213 -20.664 5.541 26.843 Atomic orbital electron populations 1.70185 1.07987 1.28650 1.47930 1.26144 0.95988 1.03344 0.93685 0.84934 0.78193 0.75919 0.78802 1.19334 1.20180 1.18158 1.23202 0.95319 0.92041 1.58998 0.90023 1.85563 1.10332 0.99080 1.97025 1.23353 1.03616 0.94584 1.06397 1.20037 0.86284 0.86597 0.74961 1.90679 1.17240 1.86017 1.50282 1.45703 1.09759 1.04724 1.75063 1.21058 0.97358 0.80469 0.96772 0.91647 1.21871 0.97727 1.02468 0.93684 1.22122 0.92115 0.93928 0.98880 1.61871 1.12706 1.49173 1.01725 1.22254 0.91360 1.01051 0.92891 1.22336 0.96543 0.85691 0.96005 1.86553 1.79632 1.36758 1.35795 1.22806 0.97550 1.00084 0.89649 1.21883 0.93593 0.96982 0.82206 0.89434 1.86602 1.65404 1.58858 1.27448 0.91949 0.87757 0.87429 0.75505 0.92377 0.89000 0.89332 0.95253 0.89403 0.92509 0.91519 0.93360 0.76069 0.87953 0.94247 0.75083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.60 13.22 21.65 0.29 -56.31 16 2 C 0.01 0.76 5.49 84.86 0.47 1.22 16 3 Si 1.00 43.98 29.55 68.60 2.03 46.01 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 7 C -0.55 -31.81 9.50 67.95 0.65 -31.16 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 10 C -0.13 -5.33 6.16 71.24 0.44 -4.89 16 11 C 0.54 20.99 7.82 87.66 0.69 21.67 16 12 O -0.56 -27.24 15.53 -3.03 -0.05 -27.29 16 13 N -0.70 -19.74 4.17 -442.15 -1.84 -21.58 16 14 C 0.15 3.78 2.51 45.07 0.11 3.89 16 15 H 0.07 2.09 7.58 -2.39 -0.02 2.07 16 16 C -0.12 -2.74 5.77 30.69 0.18 -2.56 16 17 C 0.06 1.08 4.90 86.37 0.42 1.50 16 18 N -0.53 -8.35 4.67 -896.09 -4.18 -12.54 16 19 C 0.05 0.65 5.52 86.30 0.48 1.12 16 20 C 0.07 0.81 6.68 71.98 0.48 1.29 16 21 O -0.58 -8.05 13.56 -148.98 -2.02 -10.07 16 22 C 0.03 0.39 4.93 86.33 0.43 0.81 16 23 C 0.11 2.02 3.36 30.64 0.10 2.12 16 24 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 25 O -0.58 -10.61 13.14 -148.98 -1.96 -12.57 16 26 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 27 H 0.10 4.01 8.14 -2.40 -0.02 3.99 16 28 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 29 H 0.41 9.38 7.01 -92.71 -0.65 8.73 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.09 1.56 5.79 -2.39 -0.01 1.55 16 33 H 0.03 0.59 7.69 -2.38 -0.02 0.58 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.05 0.56 6.05 -2.38 -0.01 0.54 16 38 H 0.39 2.22 9.12 -74.05 -0.68 1.55 16 39 H 0.10 1.01 8.12 -2.39 -0.02 0.99 16 40 H 0.04 0.58 6.64 -2.39 -0.02 0.56 16 41 H 0.40 3.31 9.08 -74.06 -0.67 2.63 16 Total: -1.00 -81.67 346.70 -5.39 -87.06 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -0.93 Total: 21.81 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 4.43 Total: -4.99 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -5.74 Total: -90.43 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -4.03 Total: -49.93 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -81.67 -5.39 -87.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099687092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.560 kcal (2) G-P(sol) polarization free energy of solvation -81.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds