Wall clock time and date at job start Fri Apr 10 2020 17:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00103 * 2 1 4 4 H 1.48499 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47369 * 299.99744 * 3 2 1 6 6 H 1.48504 * 109.47035 * 60.00297 * 3 2 1 7 7 C 1.38813 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00531 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99443 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99687 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46797 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46797 * 179.97438 * 11 10 9 13 13 C 1.34776 * 119.99794 * 179.97438 * 12 11 10 14 14 O 1.21704 * 120.00106 * 359.97438 * 13 12 11 15 15 C 1.46660 * 120.00058 * 180.02562 * 13 12 11 16 16 C 1.36541 * 125.98718 * 179.97438 * 15 13 12 17 17 C 1.40359 * 106.70791 * 179.76633 * 16 15 13 18 18 C 1.35136 * 107.11391 * 0.41388 * 17 16 15 19 19 C 1.50697 * 125.61934 * 179.85122 * 18 17 16 20 20 N 1.46503 * 109.47726 * 89.71157 * 19 18 17 21 21 C 1.34940 * 126.03757 * 124.99465 * 20 19 18 22 22 C 1.35317 * 107.74438 * 179.77616 * 21 20 19 23 23 C 1.39872 * 107.92021 * 0.23195 * 22 21 20 24 24 N 1.30838 * 108.20312 * 359.97438 * 23 22 21 25 25 O 1.33932 * 108.76556 * 359.57948 * 18 17 16 26 26 H 0.97004 * 119.99222 * 0.02562 * 1 2 3 27 27 H 0.97003 * 120.00143 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.46960 * 60.00263 * 10 9 7 29 29 H 1.08992 * 109.47026 * 299.99423 * 10 9 7 30 30 H 1.08997 * 109.47485 * 59.99940 * 11 10 9 31 31 H 1.09001 * 109.47351 * 299.99649 * 11 10 9 32 32 H 0.96991 * 120.00022 * 359.97438 * 12 11 10 33 33 H 1.08001 * 126.64865 * 0.02690 * 16 15 13 34 34 H 1.08003 * 126.45108 * 180.26118 * 17 16 15 35 35 H 1.09005 * 109.47160 * 329.71288 * 19 18 17 36 36 H 1.08999 * 109.47383 * 209.71778 * 19 18 17 37 37 H 1.08002 * 126.13053 * 0.04913 * 21 20 19 38 38 H 1.08003 * 126.04109 * 180.21059 * 22 21 20 39 39 H 1.08001 * 125.89461 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0008 12 7 1.7962 -6.0884 0.0013 13 6 1.1223 -7.2556 0.0012 14 8 -0.0947 -7.2556 0.0011 15 6 1.8556 -8.5258 0.0023 16 6 1.2999 -9.7730 0.0028 17 6 2.3636 -10.6887 -0.0017 18 6 3.5076 -9.9694 0.0046 19 6 4.9026 -10.5392 0.0061 20 7 5.3561 -10.7244 -1.3746 21 6 6.4858 -10.2203 -1.9136 22 6 6.5419 -10.6221 -3.2045 23 6 5.4049 -11.3940 -3.4648 24 7 4.6920 -11.4539 -2.3693 25 8 3.1973 -8.6665 0.0034 26 1 -0.4849 0.8401 -0.0004 27 1 0.3555 -2.3880 -0.0002 28 1 2.6840 -3.7141 0.8922 29 1 2.6853 -3.7150 -0.8878 30 1 0.4381 -4.7621 -0.8899 31 1 0.4361 -4.7618 0.8900 32 1 2.7662 -6.0884 0.0017 33 1 0.2460 -10.0092 0.0021 34 1 2.2831 -11.7657 -0.0065 35 1 4.9020 -11.5004 0.5202 36 1 5.5751 -9.8526 0.5204 37 1 7.2168 -9.6095 -1.4045 38 1 7.3259 -10.3879 -3.9094 39 1 5.1584 -11.8606 -4.4070 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127897174.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:21 Heat of formation + Delta-G solvation = 78.506102 kcal Electronic energy + Delta-G solvation = -23050.429483 eV Core-core repulsion = 19383.485408 eV Total energy + Delta-G solvation = -3666.944075 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.04230 -41.39855 -39.43386 -35.82728 -34.64481 -33.95825 -33.23302 -31.39542 -30.74553 -30.00463 -28.11253 -26.60444 -23.93284 -22.56966 -22.15337 -21.52597 -21.38453 -21.07992 -20.30392 -18.49630 -17.79029 -17.25204 -16.65312 -16.21591 -15.70516 -15.43631 -15.20995 -14.59045 -14.45469 -14.28660 -13.93440 -13.70405 -13.45590 -13.36363 -13.28621 -13.20198 -13.12525 -12.87564 -12.36668 -11.53381 -11.16031 -11.02041 -10.87575 -10.85029 -10.39168 -10.31300 -10.08555 -9.84978 -9.79200 -9.20149 -9.03156 -8.94718 -8.80100 -7.02473 -5.82069 -3.13078 0.67257 1.48765 1.80911 2.24631 2.42458 2.53596 3.08698 3.10587 3.40691 3.45948 3.48500 4.01888 4.08437 4.45335 4.54312 4.57407 4.64234 4.68197 4.80436 5.19640 5.33155 5.40795 5.41388 5.44210 5.46970 5.59730 5.66836 5.71104 5.89457 6.03386 6.06540 6.27695 6.34188 6.49464 6.56559 6.64712 6.67637 7.33287 7.43557 7.64149 8.03582 8.35316 9.46839 10.00727 10.35674 11.40544 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.017584 B = 0.002448 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.015286 B =11434.755230 C =12581.708019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.729 5.729 10 C 0.145 3.855 11 C 0.109 3.891 12 N -0.709 5.709 13 C 0.597 3.403 14 O -0.517 6.517 15 C -0.053 4.053 16 C -0.128 4.128 17 C -0.171 4.171 18 C -0.021 4.021 19 C 0.218 3.782 20 N -0.378 5.378 21 C 0.057 3.943 22 C -0.272 4.272 23 C 0.046 3.954 24 N -0.287 5.287 25 O -0.158 6.158 26 H 0.256 0.744 27 H 0.387 0.613 28 H 0.026 0.974 29 H 0.025 0.975 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.404 0.596 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.176 0.824 38 H 0.149 0.851 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.575 -26.732 -1.212 30.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.016 3.984 11 C -0.014 4.014 12 N -0.359 5.359 13 C 0.382 3.618 14 O -0.395 6.395 15 C -0.106 4.106 16 C -0.148 4.148 17 C -0.191 4.191 18 C -0.073 4.073 19 C 0.097 3.903 20 N -0.162 5.162 21 C -0.088 4.088 22 C -0.301 4.301 23 C -0.140 4.140 24 N -0.108 5.108 25 O -0.054 6.054 26 H 0.066 0.934 27 H 0.220 0.780 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.239 0.761 33 H 0.181 0.819 34 H 0.176 0.824 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.193 0.807 38 H 0.167 0.833 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 11.947 -26.735 -0.512 29.287 hybrid contribution 1.267 1.179 -0.460 1.791 sum 13.214 -25.555 -0.971 28.786 Atomic orbital electron populations 1.69681 1.05161 1.25776 1.57196 1.24790 0.95581 0.97856 1.02617 0.86071 0.78721 0.83826 0.77255 1.20497 1.21737 1.21748 1.19232 0.91069 0.83790 1.43418 0.90958 1.42190 1.06023 0.99510 1.89731 1.20751 0.93427 0.85593 0.98584 1.21705 0.95556 0.81101 1.03053 1.45857 1.10818 1.05807 1.73448 1.16532 0.86349 0.81264 0.77633 1.90911 1.11781 1.86114 1.50663 1.22291 0.79946 0.96574 1.11812 1.21986 1.01325 0.90282 1.01251 1.21608 0.90748 1.01151 1.05640 1.22416 0.96806 0.80995 1.07132 1.19968 0.89037 1.02154 0.79094 1.48727 1.17293 1.40407 1.09747 1.22650 0.91146 0.99770 0.95237 1.21573 1.03042 1.08872 0.96600 1.23972 0.93440 0.99051 0.97577 1.77422 1.20112 1.16244 0.97021 1.83991 1.23846 1.26883 1.70642 0.93372 0.77954 0.95661 0.95687 0.90762 0.90711 0.76110 0.81879 0.82380 0.86206 0.86449 0.80677 0.83345 0.79942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.54 5.60 -59.91 -0.34 -18.88 16 10 C 0.14 2.84 6.37 -4.04 -0.03 2.82 16 11 C 0.11 1.89 5.79 -4.04 -0.02 1.87 16 12 N -0.71 -10.39 5.55 -61.62 -0.34 -10.73 16 13 C 0.60 9.30 7.79 -12.86 -0.10 9.20 16 14 O -0.52 -9.67 16.87 5.18 0.09 -9.59 16 15 C -0.05 -0.70 7.13 -36.80 -0.26 -0.96 16 16 C -0.13 -1.49 10.62 -39.40 -0.42 -1.91 16 17 C -0.17 -1.65 10.77 -39.89 -0.43 -2.08 16 18 C -0.02 -0.20 6.74 -35.41 -0.24 -0.43 16 19 C 0.22 1.30 7.04 -5.19 -0.04 1.26 16 20 N -0.38 -3.16 3.67 -62.54 -0.23 -3.39 16 21 C 0.06 0.40 11.45 -17.23 -0.20 0.20 16 22 C -0.27 -2.02 10.80 -40.01 -0.43 -2.46 16 23 C 0.05 0.40 12.03 -17.36 -0.21 0.19 16 24 N -0.29 -3.00 12.40 30.63 0.38 -2.62 16 25 O -0.16 -1.82 10.40 5.01 0.05 -1.77 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.39 10.37 7.67 -40.82 -0.31 10.06 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.40 5.00 8.23 -40.82 -0.34 4.67 16 33 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.16 1.18 8.06 -52.48 -0.42 0.75 16 35 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.12 0.37 8.07 -51.93 -0.42 -0.05 16 37 H 0.18 0.62 8.06 -52.49 -0.42 0.19 16 38 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 351.55 15.07 5.30 5.30 Total: -1.00 -35.80 351.55 -6.85 -42.65 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -4.84 Total: 9.02 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -2.62 Total: 0.29 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: 0.20 Total: -63.15 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.14 Total: -11.36 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.80 -6.85 -42.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127897174.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.154 kcal (2) G-P(sol) polarization free energy of solvation -35.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds