Wall clock time and date at job start Fri Apr 10 2020 17:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00103 * 2 1 4 4 H 1.48499 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47369 * 299.99744 * 3 2 1 6 6 H 1.48504 * 109.47035 * 60.00297 * 3 2 1 7 7 C 1.38813 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00531 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99443 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99687 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46797 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46797 * 179.97438 * 11 10 9 13 13 C 1.34776 * 119.99794 * 179.97438 * 12 11 10 14 14 O 1.21704 * 120.00106 * 359.97438 * 13 12 11 15 15 C 1.46660 * 120.00058 * 180.02562 * 13 12 11 16 16 C 1.36541 * 125.98718 * 179.97438 * 15 13 12 17 17 C 1.40359 * 106.70791 * 179.76633 * 16 15 13 18 18 C 1.35136 * 107.11391 * 0.41388 * 17 16 15 19 19 C 1.50697 * 125.61934 * 179.85122 * 18 17 16 20 20 N 1.46503 * 109.47726 * 89.71157 * 19 18 17 21 21 C 1.34940 * 126.03757 * 124.99465 * 20 19 18 22 22 C 1.35317 * 107.74438 * 179.77616 * 21 20 19 23 23 C 1.39872 * 107.92021 * 0.23195 * 22 21 20 24 24 N 1.30838 * 108.20312 * 359.97438 * 23 22 21 25 25 O 1.33932 * 108.76556 * 359.57948 * 18 17 16 26 26 H 0.97004 * 119.99222 * 0.02562 * 1 2 3 27 27 H 0.97003 * 120.00143 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.46960 * 60.00263 * 10 9 7 29 29 H 1.08992 * 109.47026 * 299.99423 * 10 9 7 30 30 H 1.08997 * 109.47485 * 59.99940 * 11 10 9 31 31 H 1.09001 * 109.47351 * 299.99649 * 11 10 9 32 32 H 0.96991 * 120.00022 * 359.97438 * 12 11 10 33 33 H 1.08001 * 126.64865 * 0.02690 * 16 15 13 34 34 H 1.08003 * 126.45108 * 180.26118 * 17 16 15 35 35 H 1.09005 * 109.47160 * 329.71288 * 19 18 17 36 36 H 1.08999 * 109.47383 * 209.71778 * 19 18 17 37 37 H 1.08002 * 126.13053 * 0.04913 * 21 20 19 38 38 H 1.08003 * 126.04109 * 180.21059 * 22 21 20 39 39 H 1.08001 * 125.89461 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0008 12 7 1.7962 -6.0884 0.0013 13 6 1.1223 -7.2556 0.0012 14 8 -0.0947 -7.2556 0.0011 15 6 1.8556 -8.5258 0.0023 16 6 1.2999 -9.7730 0.0028 17 6 2.3636 -10.6887 -0.0017 18 6 3.5076 -9.9694 0.0046 19 6 4.9026 -10.5392 0.0061 20 7 5.3561 -10.7244 -1.3746 21 6 6.4858 -10.2203 -1.9136 22 6 6.5419 -10.6221 -3.2045 23 6 5.4049 -11.3940 -3.4648 24 7 4.6920 -11.4539 -2.3693 25 8 3.1973 -8.6665 0.0034 26 1 -0.4849 0.8401 -0.0004 27 1 0.3555 -2.3880 -0.0002 28 1 2.6840 -3.7141 0.8922 29 1 2.6853 -3.7150 -0.8878 30 1 0.4381 -4.7621 -0.8899 31 1 0.4361 -4.7618 0.8900 32 1 2.7662 -6.0884 0.0017 33 1 0.2460 -10.0092 0.0021 34 1 2.2831 -11.7657 -0.0065 35 1 4.9020 -11.5004 0.5202 36 1 5.5751 -9.8526 0.5204 37 1 7.2168 -9.6095 -1.4045 38 1 7.3259 -10.3879 -3.9094 39 1 5.1584 -11.8606 -4.4070 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127897174.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:20 Heat of formation + Delta-G solvation = 52.405002 kcal Electronic energy + Delta-G solvation = -23051.561312 eV Core-core repulsion = 19383.485408 eV Total energy + Delta-G solvation = -3668.075904 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.88870 -41.94355 -40.70045 -37.43871 -35.70510 -35.16804 -34.09537 -33.24471 -31.52617 -30.75373 -29.55003 -27.51983 -25.67219 -23.80184 -23.06311 -22.91039 -21.94472 -21.81658 -21.22322 -19.65750 -19.20415 -18.37133 -17.55068 -17.25455 -16.85389 -16.53381 -16.49220 -16.00450 -15.60023 -15.20222 -15.11778 -14.94861 -14.84052 -14.46733 -14.20892 -14.08689 -13.98464 -13.61974 -13.18186 -13.07595 -12.90861 -12.73168 -12.57096 -12.06607 -11.91421 -11.61518 -11.58962 -11.15800 -11.03213 -10.44076 -10.42471 -9.79275 -9.51680 -9.09398 -7.98615 -5.30443 -0.24173 0.88464 1.08540 1.38113 1.48311 1.49571 1.59716 1.84866 1.95054 1.96768 1.98769 2.56088 3.25604 3.35880 3.65698 3.76196 3.81039 3.92677 4.08696 4.11847 4.14752 4.24858 4.28769 4.46462 4.51812 4.63694 4.69943 4.80230 4.89959 4.92888 5.06508 5.16218 5.17897 5.24090 5.47017 5.65825 5.74433 6.10739 6.22067 6.28018 6.76702 6.84711 7.28574 7.98946 8.22563 9.25227 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.017584 B = 0.002448 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.015286 B =11434.755230 C =12581.708019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.248 4.248 8 H 0.083 0.917 9 N -0.746 5.746 10 C 0.150 3.850 11 C 0.126 3.874 12 N -0.699 5.699 13 C 0.599 3.401 14 O -0.558 6.558 15 C -0.084 4.084 16 C -0.124 4.124 17 C -0.179 4.179 18 C -0.006 4.006 19 C 0.213 3.787 20 N -0.385 5.385 21 C 0.059 3.941 22 C -0.288 4.288 23 C 0.034 3.966 24 N -0.330 5.330 25 O -0.162 6.162 26 H 0.253 0.747 27 H 0.375 0.625 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.417 0.583 33 H 0.165 0.835 34 H 0.180 0.820 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.211 0.789 38 H 0.165 0.835 39 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.554 -27.742 -0.912 32.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.379 4.379 8 H 0.101 0.899 9 N -0.390 5.390 10 C 0.023 3.977 11 C 0.002 3.998 12 N -0.350 5.350 13 C 0.386 3.614 14 O -0.439 6.439 15 C -0.137 4.137 16 C -0.144 4.144 17 C -0.199 4.199 18 C -0.059 4.059 19 C 0.093 3.907 20 N -0.169 5.169 21 C -0.086 4.086 22 C -0.317 4.317 23 C -0.152 4.152 24 N -0.151 5.151 25 O -0.058 6.058 26 H 0.061 0.939 27 H 0.207 0.793 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.254 0.746 33 H 0.183 0.817 34 H 0.198 0.802 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.227 0.773 38 H 0.182 0.818 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 14.994 -27.784 -0.213 31.573 hybrid contribution 0.446 1.324 -0.570 1.508 sum 15.440 -26.461 -0.783 30.646 Atomic orbital electron populations 1.69845 1.06847 1.26280 1.59102 1.25687 0.96459 1.01502 1.03268 0.84985 0.78330 0.79227 0.76638 1.18558 1.22039 1.21988 1.19678 0.91735 0.84769 1.41752 0.89881 1.42415 1.05804 1.00983 1.89802 1.20824 0.93507 0.84036 0.99367 1.21308 0.94896 0.81671 1.01969 1.45638 1.11309 1.04740 1.73293 1.16775 0.86045 0.82020 0.76542 1.90880 1.13536 1.86858 1.52587 1.21757 0.80891 0.95619 1.15412 1.22235 1.02123 0.90401 0.99677 1.21879 0.90127 1.02046 1.05864 1.23199 0.98525 0.80017 1.04133 1.20459 0.87549 1.04092 0.78640 1.48878 1.17627 1.40278 1.10130 1.23271 0.91057 0.99064 0.95229 1.21914 1.03255 1.08997 0.97492 1.24405 0.93759 0.99118 0.97933 1.77352 1.21654 1.17995 0.98131 1.83974 1.22778 1.28191 1.70836 0.93853 0.79328 0.94267 0.94570 0.92088 0.91769 0.74576 0.81713 0.80241 0.83598 0.83148 0.77283 0.81766 0.78465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.89 13.06 21.65 0.28 -59.61 16 2 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 3 Si 0.98 45.65 29.55 68.60 2.03 47.68 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 7 C -0.25 -13.71 9.99 84.03 0.84 -12.87 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.75 -38.05 5.60 -343.45 -1.92 -39.97 16 10 C 0.15 5.76 6.37 86.38 0.55 6.31 16 11 C 0.13 4.39 5.79 86.38 0.50 4.89 16 12 N -0.70 -20.25 5.55 -467.08 -2.59 -22.84 16 13 C 0.60 18.85 7.79 86.44 0.67 19.52 16 14 O -0.56 -21.55 16.87 -4.36 -0.07 -21.62 16 15 C -0.08 -2.18 7.13 24.07 0.17 -2.01 16 16 C -0.12 -2.82 10.62 22.39 0.24 -2.58 16 17 C -0.18 -3.12 10.77 22.07 0.24 -2.88 16 18 C -0.01 -0.10 6.74 24.97 0.17 0.07 16 19 C 0.21 1.78 7.04 85.63 0.60 2.38 16 20 N -0.39 -5.40 3.67 -351.79 -1.29 -6.69 16 21 C 0.06 0.64 11.45 83.54 0.96 1.59 16 22 C -0.29 -3.69 10.80 21.99 0.24 -3.45 16 23 C 0.03 0.54 12.03 85.24 1.03 1.57 16 24 N -0.33 -6.41 12.40 -57.02 -0.71 -7.11 16 25 O -0.16 -3.46 10.40 -5.00 -0.05 -3.51 16 26 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 27 H 0.37 20.59 7.67 -92.71 -0.71 19.88 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.42 9.81 8.23 -92.71 -0.76 9.05 16 33 H 0.17 3.57 8.06 -2.91 -0.02 3.55 16 34 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.15 0.49 8.14 -2.38 -0.02 0.47 16 36 H 0.15 0.26 8.07 -2.39 -0.02 0.24 16 37 H 0.21 0.58 8.06 -2.91 -0.02 0.56 16 38 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -78.07 351.55 1.96 -76.12 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: -0.38 Total: 28.96 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 6.67 Total: 8.60 kcal Atomic # 7 Polarization: -129.99 SS G_CDS: -6.23 Total: -136.23 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.13 Total: -25.13 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -78.07 1.96 -76.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127897174.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.521 kcal (2) G-P(sol) polarization free energy of solvation -78.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds