Wall clock time and date at job start Fri Apr 10 2020 17:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00216 * 2 1 4 4 H 1.48491 * 109.47260 * 269.99912 * 3 2 1 5 5 H 1.48506 * 109.46845 * 30.00325 * 3 2 1 6 6 H 1.48506 * 109.47278 * 149.99731 * 3 2 1 7 7 C 1.38810 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00074 * 359.97438 * 7 2 1 9 9 N 1.36941 * 120.00236 * 180.02562 * 7 2 1 10 10 C 1.46490 * 120.00196 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47582 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47633 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.47411 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00307 * 180.02562 * 13 12 11 15 15 O 1.21277 * 119.99946 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00141 * 179.97438 * 14 13 12 17 17 H 1.09001 * 109.62517 * 335.23929 * 16 14 13 18 18 C 1.53035 * 109.54704 * 215.00402 * 16 14 13 19 19 C 1.52594 * 109.98199 * 176.49713 * 18 16 14 20 20 C 1.52585 * 110.64428 * 69.98450 * 19 18 16 21 21 C 1.53038 * 109.90192 * 290.06422 * 20 19 18 22 22 S 1.81464 * 109.10019 * 63.69676 * 21 20 19 23 23 O 1.42110 * 108.67495 * 191.31805 * 22 21 20 24 24 O 1.42095 * 108.77929 * 59.97697 * 22 21 20 25 25 H 0.97004 * 120.00066 * 359.97438 * 1 2 3 26 26 H 0.97002 * 119.99804 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.47433 * 59.99880 * 10 9 7 28 28 H 1.09003 * 109.47442 * 299.99965 * 10 9 7 29 29 H 1.09004 * 109.46417 * 59.99769 * 11 10 9 30 30 H 1.08995 * 109.47041 * 300.00372 * 11 10 9 31 31 H 1.09006 * 109.46865 * 60.00121 * 12 11 10 32 32 H 1.09003 * 109.47540 * 300.00568 * 12 11 10 33 33 H 0.97004 * 119.99836 * 359.97438 * 13 12 11 34 34 H 1.08996 * 109.39010 * 56.33925 * 18 16 14 35 35 H 1.09002 * 109.38468 * 296.64812 * 18 16 14 36 36 H 1.08998 * 109.24375 * 309.68109 * 19 18 16 37 37 H 1.09002 * 109.20862 * 190.26296 * 19 18 16 38 38 H 1.09002 * 109.38633 * 50.17106 * 20 19 18 39 39 H 1.09006 * 109.38646 * 169.96349 * 20 19 18 40 40 H 1.08995 * 109.55309 * 183.45345 * 21 20 19 41 41 H 1.09001 * 109.55070 * 303.74469 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4709 0.0000 11 6 5.6163 -2.1914 0.0000 12 6 6.3813 -3.5164 0.0006 13 7 7.8216 -3.2488 0.0013 14 6 8.6974 -4.2732 0.0014 15 8 8.2931 -5.4166 0.0005 16 6 10.1790 -3.9979 0.0014 17 1 10.3687 -3.0144 -0.4286 18 6 10.8983 -5.0658 -0.8257 19 6 12.3887 -4.7481 -0.9046 20 6 13.0555 -4.9552 0.4521 21 6 12.5918 -3.8739 1.4309 22 16 10.8065 -4.0476 1.7055 23 8 10.3384 -2.8972 2.3962 24 8 10.5502 -5.3360 2.2471 25 1 -0.4850 0.8401 0.0004 26 1 3.8646 -0.3622 0.0004 27 1 3.8490 -3.0423 -0.8902 28 1 3.8484 -3.0427 0.8898 29 1 5.8796 -1.6198 0.8900 30 1 5.8797 -1.6199 -0.8899 31 1 6.1180 -4.0883 -0.8892 32 1 6.1178 -4.0877 0.8908 33 1 8.1450 -2.3342 0.0008 34 1 10.4793 -5.0874 -1.8317 35 1 10.7604 -6.0402 -0.3570 36 1 12.5191 -3.7113 -1.2145 37 1 12.8568 -5.4039 -1.6387 38 1 12.7849 -5.9364 0.8423 39 1 14.1378 -4.8979 0.3359 40 1 13.1173 -3.9903 2.3787 41 1 12.8031 -2.8894 1.0136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159831401.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:39 Heat of formation + Delta-G solvation = -103.063135 kcal Electronic energy + Delta-G solvation = -22872.082672 eV Core-core repulsion = 19300.416364 eV Total energy + Delta-G solvation = -3571.666308 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.21293 -37.86407 -37.08431 -36.47049 -36.23811 -34.58265 -32.76442 -31.92799 -30.17106 -28.58780 -25.74098 -24.31031 -22.29201 -21.59353 -21.42801 -20.79748 -19.32662 -18.08367 -17.46208 -17.30150 -16.91825 -16.29952 -16.01300 -15.63352 -15.30046 -14.68110 -14.56541 -14.33345 -14.24731 -13.97178 -13.60810 -13.47705 -12.82103 -12.65061 -12.56962 -12.45928 -12.40019 -12.18139 -12.04202 -11.96423 -11.55730 -11.23262 -11.14936 -11.05781 -10.93307 -10.78047 -10.72750 -10.19415 -10.09535 -9.59753 -9.29605 -8.90788 -7.25054 -5.77030 -3.13301 -0.63065 2.06210 2.26354 2.61524 3.23168 3.36750 3.38715 3.38851 3.44650 3.82297 3.92204 4.01175 4.13778 4.30181 4.44103 4.58486 4.61208 4.79565 4.86179 4.92422 5.15856 5.18262 5.19637 5.35191 5.43694 5.45560 5.53130 5.62264 5.73232 5.87408 5.91898 6.09614 6.19704 6.66838 6.70070 7.13391 7.80515 7.98997 8.41692 9.20347 9.92404 10.11779 11.41313 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.030085 B = 0.002605 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.480362 B =10745.314345 C =11003.967536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.161 3.839 11 C -0.144 4.144 12 C 0.119 3.881 13 N -0.718 5.718 14 C 0.526 3.474 15 O -0.510 6.510 16 C -0.601 4.601 17 H 0.154 0.846 18 C -0.094 4.094 19 C -0.140 4.140 20 C -0.113 4.113 21 C -0.603 4.603 22 S 2.425 3.575 23 O -0.928 6.928 24 O -0.912 6.912 25 H 0.260 0.740 26 H 0.361 0.639 27 H 0.031 0.969 28 H 0.031 0.969 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.404 0.596 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.139 0.861 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.363 -8.071 -1.694 34.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.403 5.403 10 C 0.033 3.967 11 C -0.182 4.182 12 C -0.004 4.004 13 N -0.370 5.370 14 C 0.308 3.692 15 O -0.384 6.384 16 C -0.710 4.710 17 H 0.172 0.828 18 C -0.132 4.132 19 C -0.178 4.178 20 C -0.152 4.152 21 C -0.733 4.733 22 S 2.603 3.397 23 O -0.924 6.924 24 O -0.909 6.909 25 H 0.070 0.930 26 H 0.193 0.807 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.239 0.761 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.157 0.843 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 32.306 -9.078 -0.914 33.569 hybrid contribution 1.126 2.087 -0.760 2.490 sum 33.432 -6.992 -1.673 34.196 Atomic orbital electron populations 1.69704 1.05108 1.25853 1.57497 1.24692 0.95278 0.97277 1.02007 0.86513 0.79211 0.84884 0.77703 1.21100 1.21685 1.20327 1.19070 0.80541 0.94844 1.43093 0.89128 1.42683 1.04134 1.02135 1.91311 1.20494 0.87471 0.89584 0.99173 1.22021 0.97266 0.96043 1.02884 1.21480 0.77331 0.98383 1.03242 1.46096 1.07495 1.09169 1.74264 1.19151 0.85712 0.85883 0.78468 1.90788 1.78982 1.20661 1.48017 1.30488 1.03397 1.10284 1.26858 0.82778 1.21239 0.93469 0.96897 1.01615 1.21744 0.94486 1.03771 0.97779 1.21347 1.02983 0.97464 0.93373 1.30252 1.24392 1.08826 1.09821 1.08240 0.79001 0.75881 0.76610 1.93638 1.79013 1.51255 1.68543 1.93635 1.83241 1.40027 1.73991 0.93026 0.80663 0.95125 0.95083 0.91001 0.91183 0.90616 0.90611 0.76087 0.89058 0.88468 0.90506 0.89076 0.89346 0.89126 0.84315 0.84538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.64 13.97 55.49 0.78 -28.86 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 22.14 27.74 -169.99 -4.71 17.43 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.47 6.52 56.52 0.37 -6.11 16 7 C -0.25 -7.07 10.47 -15.06 -0.16 -7.23 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 9 N -0.76 -18.13 5.41 -59.91 -0.32 -18.45 16 10 C 0.16 3.06 6.26 -4.04 -0.03 3.04 16 11 C -0.14 -2.05 5.44 -26.73 -0.15 -2.20 16 12 C 0.12 1.55 5.67 -4.05 -0.02 1.52 16 13 N -0.72 -7.99 5.56 -60.30 -0.33 -8.32 16 14 C 0.53 6.24 6.83 -10.98 -0.07 6.16 16 15 O -0.51 -7.98 16.35 5.56 0.09 -7.89 16 16 C -0.60 -4.36 2.80 -27.86 -0.08 -4.44 16 17 H 0.15 0.49 8.11 -51.93 -0.42 0.07 16 18 C -0.09 -0.56 4.62 -26.92 -0.12 -0.68 16 19 C -0.14 -0.40 5.62 -27.15 -0.15 -0.56 16 20 C -0.11 -0.35 5.74 -26.92 -0.15 -0.51 16 21 C -0.60 -2.20 6.33 37.18 0.24 -1.97 16 22 S 2.42 20.54 4.66 -107.50 -0.50 20.04 16 23 O -0.93 -10.73 18.10 -57.82 -1.05 -11.78 16 24 O -0.91 -11.46 17.93 -57.82 -1.04 -12.49 16 25 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 26 H 0.36 8.31 5.53 -40.82 -0.23 8.08 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.40 3.37 8.45 -40.82 -0.34 3.03 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.72 7.84 -51.93 -0.41 0.31 16 36 H 0.08 0.10 8.09 -51.93 -0.42 -0.32 16 37 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 38 H 0.09 0.33 8.02 -51.93 -0.42 -0.09 16 39 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 40 H 0.14 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.14 0.17 8.14 -51.93 -0.42 -0.25 16 LS Contribution 347.71 15.07 5.24 5.24 Total: -1.00 -39.68 347.71 -9.13 -48.80 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.48 Total: 3.15 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -0.80 Total: -6.86 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.12 Total: -55.64 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -1.99 Total: -32.16 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.43 kcal Atomic # 16 Polarization: 20.54 SS G_CDS: -0.50 Total: 20.04 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -39.68 -9.13 -48.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159831401.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.261 kcal (2) G-P(sol) polarization free energy of solvation -39.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds