Wall clock time and date at job start Fri Apr 10 2020 17:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00216 * 2 1 4 4 H 1.48491 * 109.47260 * 269.99912 * 3 2 1 5 5 H 1.48506 * 109.46845 * 30.00325 * 3 2 1 6 6 H 1.48506 * 109.47278 * 149.99731 * 3 2 1 7 7 C 1.38810 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00074 * 359.97438 * 7 2 1 9 9 N 1.36941 * 120.00236 * 180.02562 * 7 2 1 10 10 C 1.46490 * 120.00196 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47582 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47633 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.47411 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00307 * 180.02562 * 13 12 11 15 15 O 1.21277 * 119.99946 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00141 * 179.97438 * 14 13 12 17 17 H 1.09001 * 109.62517 * 335.23929 * 16 14 13 18 18 C 1.53035 * 109.54704 * 215.00402 * 16 14 13 19 19 C 1.52594 * 109.98199 * 176.49713 * 18 16 14 20 20 C 1.52585 * 110.64428 * 69.98450 * 19 18 16 21 21 C 1.53038 * 109.90192 * 290.06422 * 20 19 18 22 22 S 1.81464 * 109.10019 * 63.69676 * 21 20 19 23 23 O 1.42110 * 108.67495 * 191.31805 * 22 21 20 24 24 O 1.42095 * 108.77929 * 59.97697 * 22 21 20 25 25 H 0.97004 * 120.00066 * 359.97438 * 1 2 3 26 26 H 0.97002 * 119.99804 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.47433 * 59.99880 * 10 9 7 28 28 H 1.09003 * 109.47442 * 299.99965 * 10 9 7 29 29 H 1.09004 * 109.46417 * 59.99769 * 11 10 9 30 30 H 1.08995 * 109.47041 * 300.00372 * 11 10 9 31 31 H 1.09006 * 109.46865 * 60.00121 * 12 11 10 32 32 H 1.09003 * 109.47540 * 300.00568 * 12 11 10 33 33 H 0.97004 * 119.99836 * 359.97438 * 13 12 11 34 34 H 1.08996 * 109.39010 * 56.33925 * 18 16 14 35 35 H 1.09002 * 109.38468 * 296.64812 * 18 16 14 36 36 H 1.08998 * 109.24375 * 309.68109 * 19 18 16 37 37 H 1.09002 * 109.20862 * 190.26296 * 19 18 16 38 38 H 1.09002 * 109.38633 * 50.17106 * 20 19 18 39 39 H 1.09006 * 109.38646 * 169.96349 * 20 19 18 40 40 H 1.08995 * 109.55309 * 183.45345 * 21 20 19 41 41 H 1.09001 * 109.55070 * 303.74469 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4709 0.0000 11 6 5.6163 -2.1914 0.0000 12 6 6.3813 -3.5164 0.0006 13 7 7.8216 -3.2488 0.0013 14 6 8.6974 -4.2732 0.0014 15 8 8.2931 -5.4166 0.0005 16 6 10.1790 -3.9979 0.0014 17 1 10.3687 -3.0144 -0.4286 18 6 10.8983 -5.0658 -0.8257 19 6 12.3887 -4.7481 -0.9046 20 6 13.0555 -4.9552 0.4521 21 6 12.5918 -3.8739 1.4309 22 16 10.8065 -4.0476 1.7055 23 8 10.3384 -2.8972 2.3962 24 8 10.5502 -5.3360 2.2471 25 1 -0.4850 0.8401 0.0004 26 1 3.8646 -0.3622 0.0004 27 1 3.8490 -3.0423 -0.8902 28 1 3.8484 -3.0427 0.8898 29 1 5.8796 -1.6198 0.8900 30 1 5.8797 -1.6199 -0.8899 31 1 6.1180 -4.0883 -0.8892 32 1 6.1178 -4.0877 0.8908 33 1 8.1450 -2.3342 0.0008 34 1 10.4793 -5.0874 -1.8317 35 1 10.7604 -6.0402 -0.3570 36 1 12.5191 -3.7113 -1.2145 37 1 12.8568 -5.4039 -1.6387 38 1 12.7849 -5.9364 0.8423 39 1 14.1378 -4.8979 0.3359 40 1 13.1173 -3.9903 2.3787 41 1 12.8031 -2.8894 1.0136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159831401.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:38 Heat of formation + Delta-G solvation = -136.995047 kcal Electronic energy + Delta-G solvation = -22873.554070 eV Core-core repulsion = 19300.416364 eV Total energy + Delta-G solvation = -3573.137706 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.13009 -38.47408 -37.79531 -37.47881 -37.17535 -36.08620 -34.01034 -33.13907 -31.69255 -29.14361 -27.10543 -25.09129 -23.89192 -22.76973 -21.99045 -21.79881 -19.98027 -19.67983 -18.67429 -18.02097 -17.57426 -17.24650 -16.74383 -16.67432 -16.50426 -15.87076 -15.51708 -15.40262 -15.12399 -14.83165 -14.82307 -14.36678 -13.99868 -13.93741 -13.80978 -13.32712 -13.20397 -12.90138 -12.83129 -12.64987 -12.59574 -12.54309 -12.33953 -12.13920 -12.03810 -11.82778 -11.79993 -11.60201 -11.47522 -10.99555 -10.88935 -10.30195 -9.34014 -8.04582 -5.39985 -1.21258 1.31524 1.37744 1.42998 1.50390 1.56525 1.79305 2.48118 2.63682 2.85430 3.24642 3.26422 3.48172 3.50705 3.70093 3.75865 3.97547 4.02028 4.07217 4.18165 4.21262 4.29824 4.54793 4.64458 4.64900 4.68956 4.81740 4.86103 4.97432 5.12700 5.17689 5.20775 5.23869 5.26258 5.37059 5.72866 6.18844 6.26979 6.94107 7.05473 7.79615 8.00840 9.16910 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.030085 B = 0.002605 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.480362 B =10745.314345 C =11003.967536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.068 4.068 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.296 1.296 6 H -0.247 1.247 7 C -0.243 4.243 8 H 0.053 0.947 9 N -0.758 5.758 10 C 0.154 3.846 11 C -0.125 4.125 12 C 0.124 3.876 13 N -0.711 5.711 14 C 0.515 3.485 15 O -0.559 6.559 16 C -0.590 4.590 17 H 0.203 0.797 18 C -0.097 4.097 19 C -0.136 4.136 20 C -0.121 4.121 21 C -0.566 4.566 22 S 2.401 3.599 23 O -0.969 6.969 24 O -0.972 6.972 25 H 0.259 0.741 26 H 0.369 0.631 27 H 0.029 0.971 28 H 0.022 0.978 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.420 0.580 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.122 0.878 40 H 0.156 0.844 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.070 -5.835 -2.873 38.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.259 4.259 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.172 1.172 7 C -0.374 4.374 8 H 0.071 0.929 9 N -0.405 5.405 10 C 0.027 3.973 11 C -0.163 4.163 12 C 0.000 4.000 13 N -0.364 5.364 14 C 0.300 3.700 15 O -0.437 6.437 16 C -0.700 4.700 17 H 0.220 0.780 18 C -0.135 4.135 19 C -0.173 4.173 20 C -0.159 4.159 21 C -0.700 4.700 22 S 2.586 3.414 23 O -0.966 6.966 24 O -0.969 6.969 25 H 0.068 0.932 26 H 0.203 0.797 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.258 0.742 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.092 0.908 39 H 0.140 0.860 40 H 0.174 0.826 41 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 37.028 -6.849 -2.071 37.713 hybrid contribution -0.319 1.254 -0.425 1.362 sum 36.709 -5.595 -2.495 37.217 Atomic orbital electron populations 1.69904 1.07343 1.26919 1.59333 1.25639 0.96268 1.01767 1.02226 0.85288 0.78677 0.78750 0.78318 1.19957 1.22270 1.17158 1.19042 0.82792 0.93554 1.42003 0.92931 1.42646 1.02503 1.04177 1.91132 1.20650 0.90443 0.87641 0.98557 1.21794 0.93520 0.96747 1.04251 1.21240 0.78742 0.97552 1.02507 1.45997 1.06559 1.10122 1.73746 1.19962 0.87783 0.85159 0.77141 1.90764 1.80248 1.22601 1.50084 1.30491 0.99619 1.13355 1.26498 0.78032 1.21320 0.96040 0.95312 1.00852 1.21790 0.91481 1.05994 0.98028 1.21510 1.04757 0.96506 0.93139 1.30033 1.17091 1.11392 1.11492 1.08589 0.81943 0.74083 0.76813 1.93580 1.81343 1.51640 1.70072 1.93565 1.85424 1.42162 1.75752 0.93211 0.79714 0.95304 0.95973 0.90182 0.89163 0.90854 0.92178 0.74207 0.88974 0.91145 0.87476 0.87671 0.90755 0.85991 0.82589 0.80507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.12 13.97 21.65 0.30 -63.82 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.96 45.18 27.74 68.60 1.90 47.08 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.25 -10.27 6.52 99.48 0.65 -9.62 16 7 C -0.24 -14.23 10.47 84.03 0.88 -13.35 16 8 H 0.05 3.40 8.06 -2.91 -0.02 3.37 16 9 N -0.76 -35.69 5.41 -343.46 -1.86 -37.55 16 10 C 0.15 5.83 6.26 86.38 0.54 6.37 16 11 C -0.13 -3.34 5.44 30.59 0.17 -3.18 16 12 C 0.12 3.18 5.67 86.38 0.49 3.67 16 13 N -0.71 -14.96 5.56 -463.07 -2.57 -17.53 16 14 C 0.52 12.08 6.83 87.66 0.60 12.68 16 15 O -0.56 -18.35 16.35 -3.02 -0.05 -18.40 16 16 C -0.59 -7.42 2.80 29.86 0.08 -7.34 16 17 H 0.20 0.39 8.11 -2.39 -0.02 0.37 16 18 C -0.10 -0.97 4.62 30.47 0.14 -0.83 16 19 C -0.14 -0.19 5.62 30.32 0.17 -0.02 16 20 C -0.12 -0.25 5.74 30.47 0.17 -0.08 16 21 C -0.57 -1.74 6.33 71.99 0.46 -1.28 16 22 S 2.40 38.43 4.66 -56.49 -0.26 38.17 16 23 O -0.97 -21.77 18.10 -127.38 -2.31 -24.08 16 24 O -0.97 -25.89 17.93 -127.38 -2.28 -28.17 16 25 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 26 H 0.37 16.04 5.53 -92.71 -0.51 15.52 16 27 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.42 5.92 8.45 -92.71 -0.78 5.14 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 1.09 7.84 -2.39 -0.02 1.07 16 36 H 0.11 -0.42 8.09 -2.39 -0.02 -0.44 16 37 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 38 H 0.07 0.41 8.02 -2.39 -0.02 0.40 16 39 H 0.12 -0.33 8.14 -2.38 -0.02 -0.35 16 40 H 0.16 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.18 -0.74 8.14 -2.39 -0.02 -0.76 16 Total: -1.00 -92.49 347.71 -3.28 -95.77 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -0.32 Total: 15.49 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 4.17 Total: -6.95 kcal Atomic # 7 Polarization: -114.78 SS G_CDS: -4.13 Total: -118.91 kcal Atomic # 8 Polarization: -66.00 SS G_CDS: -4.64 Total: -70.64 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.90 Total: 47.08 kcal Atomic # 16 Polarization: 38.43 SS G_CDS: -0.26 Total: 38.17 kcal Total: -92.49 -3.28 -95.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159831401.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.227 kcal (2) G-P(sol) polarization free energy of solvation -92.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds