Wall clock time and date at job start Fri Apr 10 2020 17:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86803 * 119.99561 * 2 1 4 4 H 1.48502 * 109.46821 * 239.99786 * 3 2 1 5 5 H 1.48492 * 109.47406 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47276 * 120.00343 * 3 2 1 7 7 C 1.38622 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00237 * 179.97438 * 7 2 1 9 9 O 1.34808 * 120.00336 * 0.02562 * 7 2 1 10 10 C 1.35814 * 117.00492 * 174.86607 * 9 7 2 11 11 C 1.39449 * 120.39953 * 5.50555 * 10 9 7 12 12 C 1.38214 * 118.44901 * 179.73311 * 11 10 9 13 13 C 1.39170 * 119.16638 * 0.49029 * 12 11 10 14 14 N 1.39124 * 119.62966 * 179.77284 * 13 12 11 15 15 C 1.46497 * 120.00289 * 357.13033 * 14 13 12 16 16 C 1.53798 * 111.82563 * 176.11908 * 15 14 13 17 17 C 1.54083 * 103.79241 * 266.14219 * 16 15 14 18 18 N 1.47154 * 106.51480 * 331.75679 * 17 16 15 19 19 C 1.47316 * 109.39144 * 18.51142 * 18 17 16 20 20 H 1.09004 * 112.61268 * 123.55214 * 19 18 17 21 21 C 1.54745 * 108.13678 * 249.51697 * 19 18 17 22 22 C 1.51084 * 104.77054 * 134.09365 * 21 19 18 23 23 O 1.21278 * 124.89919 * 164.58601 * 22 21 19 24 24 N 1.34282 * 110.20636 * 344.62636 * 22 21 19 25 25 N 1.32381 * 120.74081 * 359.49772 * 13 12 11 26 26 C 1.31935 * 121.69102 * 0.25636 * 25 13 12 27 27 H 0.96996 * 119.99917 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.78199 * 359.95987 * 11 10 9 29 29 H 1.07994 * 120.41880 * 180.26753 * 12 11 10 30 30 H 0.97003 * 119.99763 * 177.12365 * 14 13 12 31 31 H 1.09005 * 110.56027 * 24.71658 * 16 15 14 32 32 H 1.08994 * 110.56591 * 147.56337 * 16 15 14 33 33 H 1.09001 * 110.04495 * 212.49672 * 17 16 15 34 34 H 1.08997 * 110.04822 * 91.02429 * 17 16 15 35 35 H 1.00896 * 110.99709 * 255.68090 * 18 17 16 36 36 H 1.09002 * 110.38060 * 252.91065 * 21 19 18 37 37 H 1.09002 * 110.37993 * 15.27098 * 21 19 18 38 38 H 0.96998 * 124.15682 * 181.94529 * 24 22 21 39 39 H 1.08001 * 119.62351 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1035 1.6965 -1.2125 5 1 1.2848 2.7465 -0.0006 6 1 3.1036 1.6966 1.2125 7 6 2.0090 -1.2005 0.0005 8 1 3.0890 -1.2005 0.0001 9 8 1.3350 -2.3680 0.0005 10 6 2.0705 -3.5046 -0.1072 11 6 3.4638 -3.4472 -0.0966 12 6 4.1723 -4.6292 -0.2032 13 6 3.4767 -5.8281 -0.3271 14 7 4.1802 -7.0231 -0.4397 15 6 5.6442 -7.0092 -0.4909 16 6 6.2289 -8.4314 -0.5191 17 6 6.5138 -8.7408 0.9632 18 7 6.7752 -7.4489 1.6175 19 6 6.2475 -6.3597 0.7776 20 1 5.5350 -5.7285 1.3087 21 6 7.4479 -5.5738 0.1978 22 6 7.1190 -5.3928 -1.2657 23 8 7.6700 -4.6087 -2.0088 24 7 6.1281 -6.2249 -1.6247 25 7 2.1530 -5.8449 -0.3334 26 6 1.4453 -4.7364 -0.2287 27 1 -0.4850 0.8400 -0.0004 28 1 3.9773 -2.5017 -0.0037 29 1 5.2522 -4.6221 -0.1941 30 1 3.7013 -7.8655 -0.4843 31 1 5.5026 -9.1359 -0.9245 32 1 7.1513 -8.4547 -1.0992 33 1 7.3878 -9.3866 1.0488 34 1 5.6476 -9.2215 1.4178 35 1 7.7611 -7.3253 1.7928 36 1 7.5400 -4.6049 0.6887 37 1 8.3678 -6.1472 0.3120 38 1 5.7764 -6.2960 -2.5259 39 1 0.3666 -4.7889 -0.2372 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163239058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:48 Heat of formation + Delta-G solvation = 12.408598 kcal Electronic energy + Delta-G solvation = -25188.536708 eV Core-core repulsion = 21518.726429 eV Total energy + Delta-G solvation = -3669.810278 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.76732 -39.46930 -38.24420 -37.18060 -35.05870 -33.69229 -32.31184 -31.85523 -31.15045 -28.96810 -27.89584 -26.07976 -25.23407 -23.18797 -21.82408 -21.79121 -20.95468 -20.51217 -18.26632 -17.92652 -17.49796 -16.70883 -16.21119 -16.11940 -15.43568 -15.14595 -14.96720 -14.46860 -14.32880 -14.13190 -13.93584 -13.75418 -13.43546 -13.17522 -12.88400 -12.72065 -12.40706 -12.32302 -12.09219 -11.70830 -11.67039 -11.57345 -11.35252 -11.05102 -10.53827 -10.25335 -9.75091 -9.71643 -9.43092 -9.03609 -8.87431 -8.84543 -8.63280 -6.84628 -6.46335 -4.03985 1.93898 2.27535 2.34178 2.97191 3.12906 3.14948 3.16961 3.28315 3.60711 3.95652 4.01567 4.11056 4.35276 4.43406 4.62419 4.74102 4.81497 4.87449 5.06502 5.20370 5.23810 5.29242 5.35946 5.44116 5.56069 5.68215 5.76408 5.82901 5.90450 6.38178 6.40485 6.54698 6.65926 6.74957 6.94974 7.03595 7.05719 7.21941 7.49552 7.86946 7.95976 8.05811 8.77459 8.98581 9.65484 10.71057 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.019929 B = 0.004029 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.620547 B = 6947.582309 C = 7728.534299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.041 3.959 3 Si 0.939 3.061 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.392 4.392 8 H 0.088 0.912 9 O -0.173 6.173 10 C 0.072 3.928 11 C -0.158 4.158 12 C -0.179 4.179 13 C 0.299 3.701 14 N -0.721 5.721 15 C 0.388 3.612 16 C -0.157 4.157 17 C 0.053 3.947 18 N -0.673 5.673 19 C 0.066 3.934 20 H 0.132 0.868 21 C -0.183 4.183 22 C 0.525 3.475 23 O -0.526 6.526 24 N -0.725 5.725 25 N -0.492 5.492 26 C 0.065 3.935 27 H 0.271 0.729 28 H 0.136 0.864 29 H 0.116 0.884 30 H 0.403 0.597 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.345 0.655 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.410 0.590 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.097 -16.279 1.382 21.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.163 4.163 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.106 0.894 9 O -0.076 6.076 10 C 0.016 3.984 11 C -0.185 4.185 12 C -0.203 4.203 13 C 0.068 3.932 14 N -0.363 5.363 15 C 0.212 3.788 16 C -0.198 4.198 17 C -0.076 4.076 18 N -0.303 5.303 19 C -0.046 4.046 20 H 0.149 0.851 21 C -0.225 4.225 22 C 0.310 3.690 23 O -0.402 6.402 24 N -0.383 5.383 25 N -0.208 5.208 26 C -0.095 4.095 27 H 0.081 0.919 28 H 0.154 0.846 29 H 0.133 0.867 30 H 0.239 0.761 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.164 0.836 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.250 0.750 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 13.152 -16.337 1.504 21.027 hybrid contribution 1.224 1.341 -1.150 2.149 sum 14.376 -14.995 0.354 20.777 Atomic orbital electron populations 1.70031 1.05900 1.27830 1.45837 1.25250 0.95845 0.98742 0.96503 0.85804 0.78742 0.79820 0.79245 1.19497 1.20208 1.19460 1.21207 0.91624 0.80886 1.53179 0.89424 1.83991 1.33536 1.10990 1.79054 1.20269 0.90741 0.89717 0.97646 1.21425 0.93966 0.98502 1.04637 1.21314 0.99490 0.91822 1.07627 1.17743 0.88148 0.85568 1.01696 1.44054 1.02174 1.06183 1.83878 1.20778 0.80923 0.91173 0.85948 1.23119 1.02305 0.94939 0.99408 1.22587 1.02468 0.91910 0.90672 1.61241 1.21783 1.00878 1.46419 1.23757 0.95587 0.93290 0.91918 0.85085 1.23226 0.99768 1.05008 0.94458 1.20548 0.79218 0.78986 0.90228 1.90786 1.54601 1.36217 1.58553 1.46713 1.37588 1.41565 1.12395 1.66884 1.05792 1.30836 1.17243 1.21450 0.99162 0.84806 1.04057 0.91918 0.84610 0.86665 0.76087 0.89084 0.89441 0.90941 0.89823 0.83643 0.87002 0.87345 0.75025 0.82935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.01 13.67 55.48 0.76 -24.25 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 7 C -0.39 -10.84 9.50 30.87 0.29 -10.55 16 8 H 0.09 2.25 5.26 -52.48 -0.28 1.97 16 9 O -0.17 -4.83 9.77 -0.09 0.00 -4.84 16 10 C 0.07 1.72 6.67 -38.97 -0.26 1.46 16 11 C -0.16 -3.39 9.25 -39.14 -0.36 -3.76 16 12 C -0.18 -3.25 7.56 -39.24 -0.30 -3.55 16 13 C 0.30 5.18 7.30 -154.90 -1.13 4.05 16 14 N -0.72 -9.16 5.52 -49.50 -0.27 -9.43 16 15 C 0.39 3.96 1.15 -190.61 -0.22 3.74 16 16 C -0.16 -1.08 6.38 -25.75 -0.16 -1.24 16 17 C 0.05 0.34 7.56 -3.12 -0.02 0.32 16 18 N -0.67 -5.39 7.26 -103.69 -0.75 -6.14 16 19 C 0.07 0.68 3.43 -65.64 -0.23 0.45 16 20 H 0.13 1.71 6.08 -51.93 -0.32 1.40 16 21 C -0.18 -1.76 5.91 -26.78 -0.16 -1.92 16 22 C 0.53 6.89 7.07 -11.02 -0.08 6.81 16 23 O -0.53 -9.11 18.03 5.56 0.10 -9.01 16 24 N -0.72 -8.37 4.71 -49.47 -0.23 -8.60 16 25 N -0.49 -9.54 10.39 -12.25 -0.13 -9.67 16 26 C 0.06 1.38 11.14 -17.35 -0.19 1.18 16 27 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.14 2.91 5.76 -52.49 -0.30 2.61 16 29 H 0.12 1.86 3.19 -52.49 -0.17 1.69 16 30 H 0.40 4.60 8.51 -40.82 -0.35 4.25 16 31 H 0.09 0.53 7.86 -51.93 -0.41 0.13 16 32 H 0.09 0.55 8.06 -51.93 -0.42 0.13 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.34 2.07 7.70 -39.29 -0.30 1.77 16 36 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.11 0.75 7.32 -51.93 -0.38 0.37 16 38 H 0.41 4.75 8.96 -40.82 -0.37 4.39 16 39 H 0.15 3.06 8.06 -52.49 -0.42 2.63 16 LS Contribution 318.11 15.07 4.79 4.79 Total: -1.00 -33.06 318.11 -7.78 -40.84 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -4.11 Total: 12.78 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.91 Total: -1.97 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.63 Total: -58.09 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.10 Total: -13.84 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.06 -7.78 -40.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163239058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.247 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds