Wall clock time and date at job start Fri Apr 10 2020 17:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86804 * 119.99876 * 2 1 4 4 H 1.48495 * 109.47107 * 269.99888 * 3 2 1 5 5 H 1.48505 * 109.46884 * 29.99833 * 3 2 1 6 6 H 1.48493 * 109.47240 * 149.99647 * 3 2 1 7 7 C 1.38630 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00101 * 180.02562 * 7 2 1 9 9 O 1.34810 * 119.99920 * 0.27532 * 7 2 1 10 10 C 1.35813 * 116.99883 * 175.31282 * 9 7 2 11 11 C 1.39454 * 120.40406 * 354.52615 * 10 9 7 12 12 C 1.38206 * 118.44561 * 180.02562 * 11 10 9 13 13 C 1.39164 * 119.17599 * 0.02562 * 12 11 10 14 14 N 1.39122 * 119.63467 * 179.97438 * 13 12 11 15 15 C 1.46498 * 119.99958 * 4.47741 * 14 13 12 16 16 C 1.50960 * 109.20657 * 70.75581 * 15 14 13 17 17 C 1.54977 * 101.23875 * 69.32739 * 16 15 14 18 18 N 1.49632 * 106.20243 * 23.32563 * 17 16 15 19 19 C 1.43937 * 105.91426 * 9.64522 * 18 17 16 20 20 H 1.09005 * 110.64053 * 79.78422 * 19 18 17 21 21 C 1.51670 * 125.86214 * 215.89510 * 19 18 17 22 22 C 1.53806 * 100.56241 * 150.75912 * 21 19 18 23 23 O 1.21280 * 125.68246 * 156.51492 * 22 21 19 24 24 N 1.37358 * 108.63780 * 336.52222 * 22 21 19 25 25 N 1.32385 * 120.73590 * 0.02562 * 13 12 11 26 26 C 1.31933 * 121.69071 * 359.66200 * 25 13 12 27 27 H 0.97000 * 120.00754 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.77388 * 359.97438 * 11 10 9 29 29 H 1.08006 * 120.40992 * 179.97438 * 12 11 10 30 30 H 0.96998 * 120.00457 * 184.47430 * 14 13 12 31 31 H 1.09005 * 111.19228 * 187.60005 * 16 15 14 32 32 H 1.08998 * 111.19358 * 311.92912 * 16 15 14 33 33 H 1.09002 * 110.28218 * 264.08187 * 17 16 15 34 34 H 1.09010 * 110.03444 * 142.43224 * 17 16 15 35 35 H 1.00900 * 110.99712 * 249.06873 * 18 17 16 36 36 H 1.09000 * 111.19225 * 32.93768 * 21 19 18 37 37 H 1.08995 * 111.19752 * 268.59053 * 21 19 18 38 38 H 0.97000 * 126.12732 * 171.30272 * 24 22 21 39 39 H 1.08004 * 119.61882 * 180.30650 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4403 0.7001 7 6 2.0089 -1.2005 0.0005 8 1 3.0890 -1.2005 0.0010 9 8 1.3349 -2.3680 -0.0046 10 6 2.0716 -3.5048 -0.1026 11 6 3.4494 -3.4375 -0.3069 12 6 4.1595 -4.6195 -0.4011 13 6 3.4807 -5.8293 -0.2903 14 7 4.1859 -7.0249 -0.3843 15 6 5.6462 -7.0068 -0.5002 16 6 6.2436 -6.5733 0.8167 17 6 5.9211 -7.7966 1.7119 18 7 5.7430 -8.9573 0.7844 19 6 6.1708 -8.4970 -0.5105 20 1 7.2582 -8.5159 -0.5850 21 6 5.5558 -8.8885 -1.8405 22 6 5.8450 -7.6245 -2.6678 23 8 5.9168 -7.5718 -3.8773 24 7 6.0084 -6.5654 -1.8086 25 7 2.1712 -5.8553 -0.0976 26 6 1.4634 -4.7465 0.0031 27 1 -0.4851 0.8400 -0.0004 28 1 3.9498 -2.4841 -0.3903 29 1 5.2277 -4.6044 -0.5596 30 1 3.7108 -7.8705 -0.3730 31 1 7.3192 -6.4195 0.7298 32 1 5.7495 -5.6799 1.1985 33 1 5.0034 -7.6223 2.2737 34 1 6.7484 -7.9875 2.3956 35 1 4.7799 -9.2573 0.7616 36 1 4.4837 -9.0594 -1.7437 37 1 6.0551 -9.7598 -2.2643 38 1 6.3152 -5.6769 -2.0480 39 1 0.3973 -4.8067 0.1653 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163239059.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:50 Heat of formation + Delta-G solvation = 32.110358 kcal Electronic energy + Delta-G solvation = -25064.978877 eV Core-core repulsion = 21396.022931 eV Total energy + Delta-G solvation = -3668.955946 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.10532 -39.53567 -38.44664 -37.17818 -35.13431 -33.52826 -32.32454 -31.80367 -31.15660 -29.01119 -27.99031 -25.98729 -25.31822 -23.04696 -22.09400 -21.28874 -20.88912 -20.56488 -18.37430 -17.76474 -17.45806 -17.19059 -16.31524 -16.10367 -15.72142 -15.33077 -14.72516 -14.54074 -14.47234 -14.11572 -13.94590 -13.73291 -13.50022 -13.26280 -12.83289 -12.75344 -12.44865 -12.36892 -11.80678 -11.68829 -11.61422 -11.58086 -11.12451 -10.91025 -10.55532 -10.31570 -9.78901 -9.77801 -9.62794 -9.09925 -8.90986 -8.88659 -8.69926 -6.86880 -6.50487 -4.08177 1.89608 2.19688 2.27177 2.91217 2.99786 3.08220 3.09060 3.13503 3.48818 3.91003 4.09352 4.16354 4.39960 4.43706 4.57000 4.74665 4.88384 4.98770 5.04358 5.16653 5.30153 5.35399 5.42359 5.52251 5.57489 5.61244 5.66552 5.78891 5.87292 6.24922 6.36188 6.50276 6.61363 6.73285 6.88511 6.98735 6.99746 7.16473 7.44796 7.84561 7.91881 7.96432 8.75025 8.94360 9.62105 10.67177 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.022378 B = 0.003541 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.948228 B = 7905.858035 C = 8088.966410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.392 4.392 8 H 0.088 0.912 9 O -0.174 6.174 10 C 0.070 3.930 11 C -0.158 4.158 12 C -0.175 4.175 13 C 0.307 3.693 14 N -0.741 5.741 15 C 0.332 3.668 16 C -0.136 4.136 17 C 0.057 3.943 18 N -0.651 5.651 19 C 0.056 3.944 20 H 0.111 0.889 21 C -0.140 4.140 22 C 0.536 3.464 23 O -0.513 6.513 24 N -0.717 5.717 25 N -0.496 5.496 26 C 0.066 3.934 27 H 0.271 0.729 28 H 0.136 0.864 29 H 0.110 0.890 30 H 0.392 0.608 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.342 0.658 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.410 0.590 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.441 -14.392 2.649 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.469 4.469 8 H 0.106 0.894 9 O -0.077 6.077 10 C 0.014 3.986 11 C -0.185 4.185 12 C -0.200 4.200 13 C 0.076 3.924 14 N -0.386 5.386 15 C 0.155 3.845 16 C -0.176 4.176 17 C -0.071 4.071 18 N -0.279 5.279 19 C -0.057 4.057 20 H 0.129 0.871 21 C -0.181 4.181 22 C 0.322 3.678 23 O -0.385 6.385 24 N -0.376 5.376 25 N -0.212 5.212 26 C -0.093 4.093 27 H 0.081 0.919 28 H 0.154 0.846 29 H 0.128 0.872 30 H 0.229 0.771 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.159 0.841 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.250 0.750 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 13.354 -15.310 2.270 20.442 hybrid contribution 0.052 2.583 -0.513 2.634 sum 13.406 -12.726 1.757 18.568 Atomic orbital electron populations 1.70033 1.05912 1.27744 1.45845 1.25256 0.95845 0.98753 0.96560 0.85732 0.78906 0.80179 0.78733 1.19882 1.20171 1.19257 1.21232 0.91577 0.80925 1.53169 0.89447 1.84006 1.33325 1.10979 1.79403 1.20263 0.90943 0.89587 0.97840 1.21409 0.94221 0.98470 1.04442 1.21031 0.99195 0.91576 1.08156 1.17768 0.88311 0.85633 1.00735 1.44713 1.03835 1.05427 1.84654 1.20743 0.81128 0.97343 0.85259 1.22415 1.01607 1.00739 0.92877 1.23227 1.02632 0.86228 0.95042 1.61837 1.27580 1.33300 1.05153 1.23000 1.01535 0.91368 0.89791 0.87109 1.22383 1.03938 0.97525 0.94267 1.22134 0.73710 0.85489 0.86478 1.90756 1.49643 1.85173 1.12934 1.46156 1.68662 1.14273 1.08528 1.66914 1.05954 1.31175 1.17129 1.21452 0.99300 0.84643 1.03950 0.91939 0.84639 0.87178 0.77111 0.89410 0.88911 0.90793 0.89520 0.84115 0.87452 0.87351 0.74974 0.83050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.72 13.67 55.48 0.76 -23.96 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.00 29.55 -169.99 -5.02 14.98 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.39 -10.61 9.47 30.88 0.29 -10.31 16 8 H 0.09 2.17 5.32 -52.49 -0.28 1.89 16 9 O -0.17 -4.80 9.77 -0.09 0.00 -4.80 16 10 C 0.07 1.61 6.67 -38.97 -0.26 1.35 16 11 C -0.16 -3.24 9.22 -39.14 -0.36 -3.60 16 12 C -0.18 -2.99 8.00 -39.25 -0.31 -3.30 16 13 C 0.31 5.11 7.34 -154.91 -1.14 3.97 16 14 N -0.74 -8.98 3.99 -50.48 -0.20 -9.19 16 15 C 0.33 3.21 0.80 -193.73 -0.15 3.06 16 16 C -0.14 -1.15 5.83 -26.71 -0.16 -1.31 16 17 C 0.06 0.43 7.26 -1.25 -0.01 0.42 16 18 N -0.65 -4.79 7.27 -103.28 -0.75 -5.54 16 19 C 0.06 0.43 3.51 -67.22 -0.24 0.20 16 20 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 21 C -0.14 -1.18 6.43 -26.99 -0.17 -1.35 16 22 C 0.54 6.58 8.36 -8.23 -0.07 6.51 16 23 O -0.51 -8.42 18.03 5.56 0.10 -8.32 16 24 N -0.72 -7.81 5.49 -49.27 -0.27 -8.08 16 25 N -0.50 -9.42 10.39 -12.25 -0.13 -9.55 16 26 C 0.07 1.38 11.14 -17.35 -0.19 1.19 16 27 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.14 2.73 5.82 -52.49 -0.31 2.43 16 29 H 0.11 1.56 5.43 -52.48 -0.28 1.27 16 30 H 0.39 4.41 6.44 -40.82 -0.26 4.14 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.97 6.43 -51.93 -0.33 0.63 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.34 2.40 7.88 -39.29 -0.31 2.09 16 36 H 0.11 0.87 6.90 -51.93 -0.36 0.52 16 37 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.41 4.38 8.31 -40.82 -0.34 4.04 16 39 H 0.15 3.01 8.06 -52.48 -0.42 2.59 16 LS Contribution 318.57 15.07 4.80 4.80 Total: -1.00 -32.20 318.57 -7.72 -39.92 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -4.14 Total: 11.91 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -2.87 Total: -2.18 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.59 Total: -56.31 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.10 Total: -13.12 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.20 -7.72 -39.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163239059.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.031 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds