Wall clock time and date at job start Fri Apr 10 2020 17:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86804 * 119.99876 * 2 1 4 4 H 1.48495 * 109.47107 * 269.99888 * 3 2 1 5 5 H 1.48505 * 109.46884 * 29.99833 * 3 2 1 6 6 H 1.48493 * 109.47240 * 149.99647 * 3 2 1 7 7 C 1.38630 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00101 * 180.02562 * 7 2 1 9 9 O 1.34810 * 119.99920 * 0.27532 * 7 2 1 10 10 C 1.35813 * 116.99883 * 175.31282 * 9 7 2 11 11 C 1.39454 * 120.40406 * 354.52615 * 10 9 7 12 12 C 1.38206 * 118.44561 * 180.02562 * 11 10 9 13 13 C 1.39164 * 119.17599 * 0.02562 * 12 11 10 14 14 N 1.39122 * 119.63467 * 179.97438 * 13 12 11 15 15 C 1.46498 * 119.99958 * 4.47741 * 14 13 12 16 16 C 1.50960 * 109.20657 * 70.75581 * 15 14 13 17 17 C 1.54977 * 101.23875 * 69.32739 * 16 15 14 18 18 N 1.49632 * 106.20243 * 23.32563 * 17 16 15 19 19 C 1.43937 * 105.91426 * 9.64522 * 18 17 16 20 20 H 1.09005 * 110.64053 * 79.78422 * 19 18 17 21 21 C 1.51670 * 125.86214 * 215.89510 * 19 18 17 22 22 C 1.53806 * 100.56241 * 150.75912 * 21 19 18 23 23 O 1.21280 * 125.68246 * 156.51492 * 22 21 19 24 24 N 1.37358 * 108.63780 * 336.52222 * 22 21 19 25 25 N 1.32385 * 120.73590 * 0.02562 * 13 12 11 26 26 C 1.31933 * 121.69071 * 359.66200 * 25 13 12 27 27 H 0.97000 * 120.00754 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.77388 * 359.97438 * 11 10 9 29 29 H 1.08006 * 120.40992 * 179.97438 * 12 11 10 30 30 H 0.96998 * 120.00457 * 184.47430 * 14 13 12 31 31 H 1.09005 * 111.19228 * 187.60005 * 16 15 14 32 32 H 1.08998 * 111.19358 * 311.92912 * 16 15 14 33 33 H 1.09002 * 110.28218 * 264.08187 * 17 16 15 34 34 H 1.09010 * 110.03444 * 142.43224 * 17 16 15 35 35 H 1.00900 * 110.99712 * 249.06873 * 18 17 16 36 36 H 1.09000 * 111.19225 * 32.93768 * 21 19 18 37 37 H 1.08995 * 111.19752 * 268.59053 * 21 19 18 38 38 H 0.97000 * 126.12732 * 171.30272 * 24 22 21 39 39 H 1.08004 * 119.61882 * 180.30650 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4403 0.7001 7 6 2.0089 -1.2005 0.0005 8 1 3.0890 -1.2005 0.0010 9 8 1.3349 -2.3680 -0.0046 10 6 2.0716 -3.5048 -0.1026 11 6 3.4494 -3.4375 -0.3069 12 6 4.1595 -4.6195 -0.4011 13 6 3.4807 -5.8293 -0.2903 14 7 4.1859 -7.0249 -0.3843 15 6 5.6462 -7.0068 -0.5002 16 6 6.2436 -6.5733 0.8167 17 6 5.9211 -7.7966 1.7119 18 7 5.7430 -8.9573 0.7844 19 6 6.1708 -8.4970 -0.5105 20 1 7.2582 -8.5159 -0.5850 21 6 5.5558 -8.8885 -1.8405 22 6 5.8450 -7.6245 -2.6678 23 8 5.9168 -7.5718 -3.8773 24 7 6.0084 -6.5654 -1.8086 25 7 2.1712 -5.8553 -0.0976 26 6 1.4634 -4.7465 0.0031 27 1 -0.4851 0.8400 -0.0004 28 1 3.9498 -2.4841 -0.3903 29 1 5.2277 -4.6044 -0.5596 30 1 3.7108 -7.8705 -0.3730 31 1 7.3192 -6.4195 0.7298 32 1 5.7495 -5.6799 1.1985 33 1 5.0034 -7.6223 2.2737 34 1 6.7484 -7.9875 2.3956 35 1 4.7799 -9.2573 0.7616 36 1 4.4837 -9.0594 -1.7437 37 1 6.0551 -9.7598 -2.2643 38 1 6.3152 -5.6769 -2.0480 39 1 0.3973 -4.8067 0.1653 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163239059.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:50 Heat of formation + Delta-G solvation = 5.140057 kcal Electronic energy + Delta-G solvation = -25066.148397 eV Core-core repulsion = 21396.022931 eV Total energy + Delta-G solvation = -3670.125466 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.98371 -41.12830 -39.49922 -38.83644 -36.01204 -34.84418 -34.12231 -33.11049 -32.27822 -29.97842 -29.28948 -27.30335 -26.67522 -24.60202 -23.53525 -22.00400 -21.79331 -21.55431 -20.10240 -19.21104 -18.51594 -18.34501 -17.80368 -16.93761 -16.81386 -16.41633 -16.23940 -15.91951 -15.78044 -15.34991 -15.27218 -14.95656 -14.64311 -14.46898 -14.21608 -14.09303 -13.61513 -13.51794 -13.23972 -13.18086 -12.77387 -12.44137 -12.21511 -12.15229 -11.67790 -11.63490 -11.38402 -11.13569 -10.74394 -10.63248 -10.45678 -10.43073 -9.58416 -8.45734 -8.41902 -6.11335 0.29977 0.66830 1.24046 1.35774 1.44602 1.52577 2.01647 2.04877 2.18129 2.57336 2.85696 3.16342 3.34776 3.43822 3.48089 3.70412 3.73777 3.80292 4.02163 4.09163 4.20025 4.22669 4.27066 4.37627 4.71666 4.77657 4.80540 4.89137 4.91882 4.98930 5.05746 5.21137 5.42063 5.45126 5.60304 5.65693 5.83828 5.97393 6.11717 6.29785 6.57935 6.98110 7.02426 7.23554 7.77823 8.77174 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.022378 B = 0.003541 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.948228 B = 7905.858035 C = 8088.966410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.022 4.022 3 Si 1.016 2.984 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.251 1.251 7 C -0.411 4.411 8 H 0.101 0.899 9 O -0.226 6.226 10 C 0.028 3.972 11 C -0.153 4.153 12 C -0.170 4.170 13 C 0.332 3.668 14 N -0.725 5.725 15 C 0.318 3.682 16 C -0.133 4.133 17 C 0.060 3.940 18 N -0.646 5.646 19 C 0.078 3.922 20 H 0.127 0.873 21 C -0.132 4.132 22 C 0.528 3.472 23 O -0.560 6.560 24 N -0.715 5.715 25 N -0.506 5.506 26 C 0.062 3.938 27 H 0.272 0.728 28 H 0.136 0.864 29 H 0.145 0.855 30 H 0.401 0.599 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.345 0.655 36 H 0.113 0.887 37 H 0.129 0.871 38 H 0.410 0.590 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.725 -16.261 3.199 23.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.220 4.220 3 Si 0.835 3.165 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.174 1.174 7 C -0.487 4.487 8 H 0.118 0.882 9 O -0.132 6.132 10 C -0.025 4.025 11 C -0.180 4.180 12 C -0.194 4.194 13 C 0.097 3.903 14 N -0.369 5.369 15 C 0.142 3.858 16 C -0.173 4.173 17 C -0.068 4.068 18 N -0.274 5.274 19 C -0.035 4.035 20 H 0.144 0.856 21 C -0.172 4.172 22 C 0.316 3.684 23 O -0.436 6.436 24 N -0.372 5.372 25 N -0.223 5.223 26 C -0.095 4.095 27 H 0.081 0.919 28 H 0.154 0.846 29 H 0.162 0.838 30 H 0.239 0.761 31 H 0.130 0.870 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.163 0.837 36 H 0.131 0.869 37 H 0.148 0.852 38 H 0.250 0.750 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 16.682 -17.261 2.849 24.174 hybrid contribution -0.767 2.764 -0.695 2.952 sum 15.916 -14.497 2.154 21.636 Atomic orbital electron populations 1.70184 1.07986 1.28732 1.48923 1.26518 0.96800 1.02600 0.96035 0.84621 0.77949 0.74805 0.79090 1.19130 1.19776 1.17409 1.21743 0.92385 0.81459 1.53128 0.88176 1.83968 1.34845 1.12009 1.82402 1.20640 0.92273 0.89222 1.00343 1.21569 0.93333 0.99831 1.03252 1.21292 1.00710 0.90420 1.06979 1.18181 0.87827 0.87329 0.96940 1.44912 1.05017 1.04207 1.82802 1.21201 0.79392 0.99900 0.85323 1.22462 1.02854 1.00379 0.91598 1.23247 1.02938 0.85678 0.94938 1.61886 1.27967 1.32936 1.04643 1.23008 1.02202 0.88718 0.89609 0.85576 1.22383 1.04624 0.96308 0.93932 1.22823 0.72607 0.86827 0.86127 1.90736 1.51724 1.86024 1.15112 1.46213 1.67900 1.14291 1.08835 1.67031 1.06968 1.29981 1.18324 1.21529 0.99735 0.84647 1.03594 0.91903 0.84626 0.83754 0.76107 0.86973 0.90699 0.91741 0.87785 0.83723 0.86881 0.85236 0.74969 0.83122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.57 13.67 21.61 0.30 -55.28 16 2 C -0.02 -1.21 5.49 84.82 0.47 -0.75 16 3 Si 1.02 41.73 29.55 68.60 2.03 43.75 16 4 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 7 C -0.41 -23.09 9.47 67.91 0.64 -22.44 16 8 H 0.10 5.08 5.32 -2.91 -0.02 5.06 16 9 O -0.23 -13.17 9.77 -23.23 -0.23 -13.40 16 10 C 0.03 1.36 6.67 22.67 0.15 1.51 16 11 C -0.15 -6.23 9.22 22.56 0.21 -6.02 16 12 C -0.17 -5.46 8.00 22.48 0.18 -5.28 16 13 C 0.33 10.39 7.34 133.03 0.98 11.36 16 14 N -0.72 -15.34 3.99 -313.63 -1.25 -16.59 16 15 C 0.32 4.97 0.80 90.67 0.07 5.04 16 16 C -0.13 -1.71 5.83 30.61 0.18 -1.53 16 17 C 0.06 0.67 7.26 86.45 0.63 1.30 16 18 N -0.65 -6.68 7.27 -480.68 -3.49 -10.18 16 19 C 0.08 0.85 3.51 46.81 0.16 1.02 16 20 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 21 C -0.13 -1.73 6.43 30.43 0.20 -1.53 16 22 C 0.53 11.65 8.36 88.26 0.74 12.38 16 23 O -0.56 -17.71 18.03 -3.03 -0.05 -17.77 16 24 N -0.71 -13.41 5.49 -426.67 -2.34 -15.75 16 25 N -0.51 -18.82 10.39 -192.67 -2.00 -20.82 16 26 C 0.06 2.68 11.14 84.78 0.94 3.62 16 27 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 28 H 0.14 5.46 5.82 -2.91 -0.02 5.45 16 29 H 0.14 3.62 5.43 -2.91 -0.02 3.61 16 30 H 0.40 7.62 6.44 -92.71 -0.60 7.02 16 31 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.07 1.30 6.43 -2.39 -0.02 1.28 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.35 3.41 7.88 -89.69 -0.71 2.71 16 36 H 0.11 1.41 6.90 -2.39 -0.02 1.40 16 37 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.41 7.63 8.31 -92.71 -0.77 6.86 16 39 H 0.15 6.33 8.06 -2.91 -0.02 6.30 16 Total: -1.00 -74.53 318.57 -2.42 -76.95 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: -0.92 Total: 30.39 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 5.54 Total: -1.32 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -8.79 Total: -118.62 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.28 Total: -31.16 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -74.53 -2.42 -76.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163239059.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.092 kcal (2) G-P(sol) polarization free energy of solvation -74.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds