Wall clock time and date at job start Fri Apr 10 2020 17:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00144 * 2 1 4 4 H 1.48501 * 109.47109 * 270.00152 * 3 2 1 5 5 H 1.48500 * 109.46846 * 30.00260 * 3 2 1 6 6 H 1.48494 * 109.46927 * 149.99978 * 3 2 1 7 7 C 1.38811 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00449 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00028 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99928 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46719 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46997 * 180.02562 * 11 10 9 13 13 N 1.46492 * 109.47218 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00240 * 180.02562 * 13 12 11 15 15 O 1.21278 * 119.99724 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00372 * 180.02562 * 14 13 12 17 17 C 1.52992 * 109.47250 * 180.02562 * 16 14 13 18 18 H 1.08999 * 110.84960 * 301.57015 * 17 16 14 19 19 C 1.55045 * 110.79178 * 178.14539 * 17 16 14 20 20 C 1.54017 * 106.70283 * 199.34157 * 19 17 16 21 21 C 1.54169 * 108.62956 * 47.04388 * 20 19 17 22 22 S 1.82915 * 105.17362 * 332.22706 * 21 20 19 23 23 O 1.42104 * 109.35195 * 115.47093 * 22 21 20 24 24 O 1.42098 * 109.35454 * 248.53779 * 22 21 20 25 25 H 0.96999 * 119.99685 * 359.97438 * 1 2 3 26 26 H 0.96999 * 120.00105 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.47328 * 59.99996 * 10 9 7 28 28 H 1.08997 * 109.47134 * 299.99180 * 10 9 7 29 29 H 1.09001 * 109.46991 * 60.00074 * 11 10 9 30 30 H 1.08996 * 109.47399 * 299.99658 * 11 10 9 31 31 H 1.09000 * 109.46893 * 59.99467 * 12 11 10 32 32 H 1.09001 * 109.47080 * 300.00248 * 12 11 10 33 33 H 0.96998 * 120.00150 * 359.97438 * 13 12 11 34 34 H 1.08994 * 109.47368 * 59.99443 * 16 14 13 35 35 H 1.09002 * 109.46517 * 299.99892 * 16 14 13 36 36 H 1.08998 * 110.02729 * 318.58792 * 19 17 16 37 37 H 1.09003 * 110.02820 * 79.95495 * 19 17 16 38 38 H 1.09004 * 109.61563 * 287.26017 * 20 19 17 39 39 H 1.08990 * 109.75436 * 166.91662 * 20 19 17 40 40 H 1.09002 * 110.32164 * 213.27217 * 21 20 19 41 41 H 1.08998 * 110.31391 * 91.17635 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4710 0.0000 11 6 5.6163 -2.1914 0.0000 12 6 6.3814 -3.5165 -0.0007 13 7 7.8216 -3.2488 0.0000 14 6 8.6975 -4.2732 -0.0010 15 8 8.2932 -5.4166 -0.0019 16 6 10.1791 -3.9979 0.0003 17 6 10.9440 -5.3229 -0.0018 18 1 10.6757 -5.9271 0.8648 19 6 12.4739 -5.0751 -0.0475 20 6 13.1201 -6.3852 -0.5353 21 6 12.3420 -6.8894 -1.7671 22 16 10.6429 -6.2457 -1.5565 23 8 10.3546 -5.3266 -2.6013 24 8 9.7577 -7.3276 -1.3014 25 1 -0.4850 0.8401 0.0004 26 1 3.8647 -0.3622 0.0004 27 1 3.8491 -3.0424 -0.8902 28 1 3.8485 -3.0427 0.8898 29 1 5.8796 -1.6198 0.8900 30 1 5.8797 -1.6199 -0.8900 31 1 6.1179 -4.0877 -0.8908 32 1 6.1181 -4.0884 0.8891 33 1 8.1450 -2.3343 0.0003 34 1 10.4420 -3.4275 0.8911 35 1 10.4428 -3.4251 -0.8888 36 1 12.7005 -4.2671 -0.7431 37 1 12.8414 -4.8246 0.9476 38 1 13.0757 -7.1324 0.2571 39 1 14.1598 -6.2041 -0.8076 40 1 12.3339 -7.9791 -1.7898 41 1 12.7852 -6.4957 -2.6818 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163359376.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:57 Heat of formation + Delta-G solvation = -102.125474 kcal Electronic energy + Delta-G solvation = -22609.394289 eV Core-core repulsion = 19037.768641 eV Total energy + Delta-G solvation = -3571.625648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.06462 -37.35817 -37.04567 -36.28001 -36.03916 -34.53486 -32.88577 -31.95609 -30.12695 -27.92446 -25.65705 -24.25058 -22.21943 -21.84497 -21.34891 -20.49572 -18.97259 -17.69207 -17.58307 -17.07961 -16.87808 -16.17775 -15.93933 -15.62801 -15.06540 -14.65431 -14.54392 -14.37735 -14.22005 -13.75751 -13.51774 -13.17791 -12.81620 -12.55037 -12.49265 -12.42724 -12.26911 -12.15614 -12.09010 -12.00766 -11.54356 -11.20046 -11.04472 -10.94943 -10.86067 -10.71333 -10.47735 -10.18635 -10.06098 -9.59048 -9.19775 -8.90008 -7.24129 -5.76297 -3.12466 -0.26559 2.28042 2.35454 2.87687 3.28550 3.36273 3.38847 3.44522 3.61888 3.89348 3.97439 4.11354 4.21388 4.39192 4.53032 4.58806 4.62861 4.79454 4.92963 4.98358 5.06915 5.17410 5.19978 5.22303 5.27469 5.38368 5.49583 5.54104 5.78313 5.92040 5.96137 6.13463 6.29524 6.69258 6.72318 7.25347 7.94472 8.00003 8.42479 9.21136 9.93132 10.12653 11.42083 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.038457 B = 0.002340 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.920086 B =11964.247799 C =12254.668630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.160 3.840 11 C -0.142 4.142 12 C 0.118 3.882 13 N -0.720 5.720 14 C 0.494 3.506 15 O -0.534 6.534 16 C -0.122 4.122 17 C -0.537 4.537 18 H 0.151 0.849 19 C -0.120 4.120 20 C -0.113 4.113 21 C -0.610 4.610 22 S 2.394 3.606 23 O -0.935 6.935 24 O -0.912 6.912 25 H 0.260 0.740 26 H 0.360 0.640 27 H 0.031 0.969 28 H 0.030 0.970 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.403 0.597 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.136 0.864 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.270 -10.342 0.313 35.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.718 3.282 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.403 5.403 10 C 0.032 3.968 11 C -0.180 4.180 12 C -0.005 4.005 13 N -0.371 5.371 14 C 0.279 3.721 15 O -0.411 6.411 16 C -0.162 4.162 17 C -0.647 4.647 18 H 0.169 0.831 19 C -0.159 4.159 20 C -0.151 4.151 21 C -0.738 4.738 22 S 2.574 3.426 23 O -0.932 6.932 24 O -0.909 6.909 25 H 0.070 0.930 26 H 0.193 0.807 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.237 0.763 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.155 0.845 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 32.897 -11.381 -0.242 34.811 hybrid contribution 1.401 1.783 0.505 2.323 sum 34.298 -9.597 0.263 35.617 Atomic orbital electron populations 1.69708 1.05096 1.25825 1.57547 1.24700 0.95290 0.97278 1.02068 0.86501 0.79103 0.84877 0.77736 1.21063 1.21722 1.20423 1.19078 0.80563 0.94849 1.42999 0.89126 1.42687 1.04128 1.02143 1.91316 1.20504 0.87587 0.89527 0.99176 1.22001 0.97238 0.96137 1.02635 1.21430 0.77854 0.98094 1.03119 1.45970 1.07330 1.09237 1.74558 1.20721 0.88715 0.85844 0.76798 1.90879 1.80238 1.20599 1.49402 1.21355 0.91317 0.96576 1.06979 1.30251 1.02302 1.09018 1.23083 0.83085 1.22378 0.89993 0.98462 1.05021 1.21892 1.01040 0.97040 0.95171 1.30696 1.23776 1.12505 1.06869 1.09265 0.77883 0.77263 0.78165 1.93598 1.83155 1.63804 1.52645 1.93637 1.59831 1.52770 1.84682 0.93043 0.80699 0.95056 0.95172 0.91316 0.91214 0.90788 0.90858 0.76310 0.86577 0.86797 0.89288 0.88159 0.89636 0.88935 0.84521 0.84702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.70 13.97 55.49 0.78 -28.92 16 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 3 Si 0.89 22.14 27.74 -169.99 -4.71 17.42 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.44 6.52 56.52 0.37 -6.08 16 7 C -0.25 -7.08 10.47 -15.06 -0.16 -7.24 16 8 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 9 N -0.76 -18.19 5.41 -59.90 -0.32 -18.52 16 10 C 0.16 3.08 6.26 -4.04 -0.03 3.05 16 11 C -0.14 -2.02 5.44 -26.73 -0.15 -2.17 16 12 C 0.12 1.57 5.67 -4.04 -0.02 1.55 16 13 N -0.72 -7.75 5.56 -60.30 -0.33 -8.08 16 14 C 0.49 5.78 7.58 -10.99 -0.08 5.69 16 15 O -0.53 -8.50 14.15 -9.91 -0.14 -8.64 16 16 C -0.12 -0.82 5.03 -27.89 -0.14 -0.96 16 17 C -0.54 -3.44 2.74 -25.65 -0.07 -3.51 16 18 H 0.15 0.93 8.09 -51.93 -0.42 0.51 16 19 C -0.12 -0.34 5.90 -25.12 -0.15 -0.49 16 20 C -0.11 -0.32 6.41 -25.59 -0.16 -0.48 16 21 C -0.61 -2.91 7.26 37.77 0.27 -2.64 16 22 S 2.39 23.22 4.73 -107.50 -0.51 22.71 16 23 O -0.93 -11.84 17.33 -57.73 -1.00 -12.84 16 24 O -0.91 -13.29 17.12 -64.39 -1.10 -14.40 16 25 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 26 H 0.36 8.30 5.53 -40.82 -0.23 8.07 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.40 3.04 8.47 -40.82 -0.35 2.69 16 34 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.11 0.61 7.76 -51.93 -0.40 0.21 16 36 H 0.09 0.16 8.08 -51.93 -0.42 -0.26 16 37 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 39 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 40 H 0.14 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.13 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 347.01 15.07 5.23 5.23 Total: -1.00 -40.50 347.01 -9.38 -49.87 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.48 Total: 3.38 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -0.78 Total: -7.21 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.12 Total: -55.52 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -2.24 Total: -35.88 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.42 kcal Atomic # 16 Polarization: 23.22 SS G_CDS: -0.51 Total: 22.71 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -40.50 -9.38 -49.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163359376.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.251 kcal (2) G-P(sol) polarization free energy of solvation -40.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds