Wall clock time and date at job start Fri Apr 10 2020 17:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00144 * 2 1 4 4 H 1.48501 * 109.47109 * 270.00152 * 3 2 1 5 5 H 1.48500 * 109.46846 * 30.00260 * 3 2 1 6 6 H 1.48494 * 109.46927 * 149.99978 * 3 2 1 7 7 C 1.38811 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00449 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00028 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99928 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46719 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46997 * 180.02562 * 11 10 9 13 13 N 1.46492 * 109.47218 * 180.02562 * 12 11 10 14 14 C 1.34778 * 120.00240 * 180.02562 * 13 12 11 15 15 O 1.21278 * 119.99724 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00372 * 180.02562 * 14 13 12 17 17 C 1.52992 * 109.47250 * 180.02562 * 16 14 13 18 18 H 1.08999 * 110.84960 * 301.57015 * 17 16 14 19 19 C 1.55045 * 110.79178 * 178.14539 * 17 16 14 20 20 C 1.54017 * 106.70283 * 199.34157 * 19 17 16 21 21 C 1.54169 * 108.62956 * 47.04388 * 20 19 17 22 22 S 1.82915 * 105.17362 * 332.22706 * 21 20 19 23 23 O 1.42104 * 109.35195 * 115.47093 * 22 21 20 24 24 O 1.42098 * 109.35454 * 248.53779 * 22 21 20 25 25 H 0.96999 * 119.99685 * 359.97438 * 1 2 3 26 26 H 0.96999 * 120.00105 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.47328 * 59.99996 * 10 9 7 28 28 H 1.08997 * 109.47134 * 299.99180 * 10 9 7 29 29 H 1.09001 * 109.46991 * 60.00074 * 11 10 9 30 30 H 1.08996 * 109.47399 * 299.99658 * 11 10 9 31 31 H 1.09000 * 109.46893 * 59.99467 * 12 11 10 32 32 H 1.09001 * 109.47080 * 300.00248 * 12 11 10 33 33 H 0.96998 * 120.00150 * 359.97438 * 13 12 11 34 34 H 1.08994 * 109.47368 * 59.99443 * 16 14 13 35 35 H 1.09002 * 109.46517 * 299.99892 * 16 14 13 36 36 H 1.08998 * 110.02729 * 318.58792 * 19 17 16 37 37 H 1.09003 * 110.02820 * 79.95495 * 19 17 16 38 38 H 1.09004 * 109.61563 * 287.26017 * 20 19 17 39 39 H 1.08990 * 109.75436 * 166.91662 * 20 19 17 40 40 H 1.09002 * 110.32164 * 213.27217 * 21 20 19 41 41 H 1.08998 * 110.31391 * 91.17635 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4710 0.0000 11 6 5.6163 -2.1914 0.0000 12 6 6.3814 -3.5165 -0.0007 13 7 7.8216 -3.2488 0.0000 14 6 8.6975 -4.2732 -0.0010 15 8 8.2932 -5.4166 -0.0019 16 6 10.1791 -3.9979 0.0003 17 6 10.9440 -5.3229 -0.0018 18 1 10.6757 -5.9271 0.8648 19 6 12.4739 -5.0751 -0.0475 20 6 13.1201 -6.3852 -0.5353 21 6 12.3420 -6.8894 -1.7671 22 16 10.6429 -6.2457 -1.5565 23 8 10.3546 -5.3266 -2.6013 24 8 9.7577 -7.3276 -1.3014 25 1 -0.4850 0.8401 0.0004 26 1 3.8647 -0.3622 0.0004 27 1 3.8491 -3.0424 -0.8902 28 1 3.8485 -3.0427 0.8898 29 1 5.8796 -1.6198 0.8900 30 1 5.8797 -1.6199 -0.8900 31 1 6.1179 -4.0877 -0.8908 32 1 6.1181 -4.0884 0.8891 33 1 8.1450 -2.3343 0.0003 34 1 10.4420 -3.4275 0.8911 35 1 10.4428 -3.4251 -0.8888 36 1 12.7005 -4.2671 -0.7431 37 1 12.8414 -4.8246 0.9476 38 1 13.0757 -7.1324 0.2571 39 1 14.1598 -6.2041 -0.8076 40 1 12.3339 -7.9791 -1.7898 41 1 12.7852 -6.4957 -2.6818 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163359376.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:56 Heat of formation + Delta-G solvation = -136.270644 kcal Electronic energy + Delta-G solvation = -22610.874935 eV Core-core repulsion = 19037.768641 eV Total energy + Delta-G solvation = -3573.106294 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97109 -38.06817 -37.79125 -37.39092 -36.87427 -36.02664 -33.97669 -33.31200 -31.70781 -28.55454 -26.94169 -25.09926 -23.81968 -22.73363 -22.18122 -21.50933 -19.75095 -19.59279 -18.19142 -17.99542 -17.57390 -17.06716 -16.88975 -16.59124 -16.39504 -15.83067 -15.64615 -15.29487 -14.98679 -14.82555 -14.68915 -14.36058 -14.06769 -13.80182 -13.45888 -13.12769 -13.00724 -12.88937 -12.86626 -12.78911 -12.57742 -12.56538 -12.51151 -12.11680 -12.02793 -11.81848 -11.72881 -11.49911 -11.14235 -10.99725 -10.88892 -10.18718 -9.34175 -8.04515 -5.40143 -0.86776 1.37474 1.43658 1.47995 1.50860 1.72077 2.07119 2.48365 2.75699 3.04006 3.26277 3.37279 3.51995 3.55718 3.69409 3.89364 3.95968 4.03658 4.16304 4.18718 4.21383 4.28069 4.50924 4.61211 4.67278 4.68457 4.75209 4.81094 4.85447 5.07306 5.12890 5.20759 5.21828 5.25251 5.35592 5.72685 6.18839 6.43129 7.05419 7.13398 7.79190 8.01312 9.17007 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.038457 B = 0.002340 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.920086 B =11964.247799 C =12254.668630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.069 4.069 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.244 1.244 7 C -0.244 4.244 8 H 0.051 0.949 9 N -0.757 5.757 10 C 0.153 3.847 11 C -0.121 4.121 12 C 0.125 3.875 13 N -0.711 5.711 14 C 0.481 3.519 15 O -0.585 6.585 16 C -0.119 4.119 17 C -0.518 4.518 18 H 0.151 0.849 19 C -0.114 4.114 20 C -0.117 4.117 21 C -0.580 4.580 22 S 2.346 3.654 23 O -0.983 6.983 24 O -0.986 6.986 25 H 0.259 0.741 26 H 0.370 0.630 27 H 0.021 0.979 28 H 0.025 0.975 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.421 0.579 34 H 0.161 0.839 35 H 0.132 0.868 36 H 0.107 0.893 37 H 0.131 0.869 38 H 0.095 0.905 39 H 0.122 0.878 40 H 0.145 0.855 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 39.465 -8.150 1.417 40.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.260 4.260 3 Si 0.792 3.208 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.168 1.168 7 C -0.375 4.375 8 H 0.069 0.931 9 N -0.404 5.404 10 C 0.026 3.974 11 C -0.159 4.159 12 C 0.000 4.000 13 N -0.363 5.363 14 C 0.268 3.732 15 O -0.466 6.466 16 C -0.159 4.159 17 C -0.631 4.631 18 H 0.169 0.831 19 C -0.152 4.152 20 C -0.155 4.155 21 C -0.712 4.712 22 S 2.536 3.464 23 O -0.980 6.980 24 O -0.983 6.983 25 H 0.068 0.932 26 H 0.204 0.796 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.259 0.741 34 H 0.179 0.821 35 H 0.150 0.850 36 H 0.125 0.875 37 H 0.149 0.851 38 H 0.114 0.886 39 H 0.140 0.860 40 H 0.163 0.837 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 38.105 -9.191 0.833 39.206 hybrid contribution -0.185 0.974 0.178 1.007 sum 37.919 -8.217 1.011 38.813 Atomic orbital electron populations 1.69914 1.07387 1.26945 1.59279 1.25676 0.96313 1.01884 1.02174 0.85255 0.78765 0.78556 0.78248 1.20241 1.22139 1.16803 1.19040 0.82845 0.93521 1.42106 0.93125 1.42630 1.02461 1.04152 1.91128 1.20657 0.90794 0.87613 0.98335 1.21760 0.93211 0.96727 1.04208 1.21132 0.79731 0.97262 1.01844 1.45826 1.06012 1.10358 1.74097 1.21747 0.90997 0.85030 0.75418 1.90877 1.81439 1.22741 1.51504 1.21555 0.87138 0.97338 1.09882 1.30071 1.05421 1.08068 1.19554 0.83075 1.22542 0.86313 0.98997 1.07354 1.22102 1.01934 0.97332 0.94124 1.30446 1.18593 1.12885 1.09305 1.10152 0.80067 0.76871 0.79352 1.93522 1.85109 1.64475 1.54922 1.93544 1.64073 1.54930 1.85785 0.93207 0.79645 0.96108 0.95709 0.89352 0.89873 0.92855 0.91713 0.74092 0.82103 0.84970 0.87455 0.85054 0.88596 0.85963 0.83674 0.82890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.36 13.97 21.65 0.30 -64.06 16 2 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 3 Si 0.97 45.10 27.74 68.60 1.90 47.00 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.24 -9.93 6.52 99.48 0.65 -9.28 16 7 C -0.24 -14.40 10.47 84.03 0.88 -13.52 16 8 H 0.05 3.31 8.06 -2.91 -0.02 3.28 16 9 N -0.76 -35.82 5.41 -343.44 -1.86 -37.68 16 10 C 0.15 5.88 6.26 86.38 0.54 6.42 16 11 C -0.12 -3.23 5.44 30.60 0.17 -3.06 16 12 C 0.13 3.28 5.67 86.38 0.49 3.77 16 13 N -0.71 -14.18 5.56 -463.07 -2.57 -16.75 16 14 C 0.48 10.86 7.58 87.66 0.66 11.53 16 15 O -0.58 -19.49 14.15 11.76 0.17 -19.32 16 16 C -0.12 -1.24 5.03 29.84 0.15 -1.09 16 17 C -0.52 -5.42 2.74 31.29 0.09 -5.33 16 18 H 0.15 1.63 8.09 -2.39 -0.02 1.61 16 19 C -0.11 -0.08 5.90 31.64 0.19 0.11 16 20 C -0.12 -0.12 6.41 31.33 0.20 0.08 16 21 C -0.58 -4.22 7.26 72.38 0.53 -3.70 16 22 S 2.35 46.68 4.73 -56.49 -0.27 46.41 16 23 O -0.98 -26.01 17.33 -127.47 -2.21 -28.22 16 24 O -0.99 -31.70 17.12 -121.10 -2.07 -33.78 16 25 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 26 H 0.37 16.01 5.53 -92.71 -0.51 15.50 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.42 5.02 8.47 -92.71 -0.79 4.23 16 34 H 0.16 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.13 0.97 7.76 -2.39 -0.02 0.95 16 36 H 0.11 -0.24 8.08 -2.39 -0.02 -0.26 16 37 H 0.13 -0.55 8.14 -2.39 -0.02 -0.57 16 38 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.12 -0.42 8.14 -2.39 -0.02 -0.44 16 40 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -96.15 347.01 -2.57 -98.72 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -0.32 Total: 16.16 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 4.36 Total: -8.47 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -4.13 Total: -118.49 kcal Atomic # 8 Polarization: -77.20 SS G_CDS: -4.12 Total: -81.32 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Atomic # 16 Polarization: 46.68 SS G_CDS: -0.27 Total: 46.41 kcal Total: -96.15 -2.57 -98.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163359376.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.552 kcal (2) G-P(sol) polarization free energy of solvation -96.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds