Wall clock time and date at job start Fri Apr 10 2020 17:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30721 * 1 3 3 Si 1.86806 * 120.00037 * 2 1 4 4 H 1.48502 * 109.47125 * 274.98735 * 3 2 1 5 5 H 1.48495 * 109.46880 * 34.98623 * 3 2 1 6 6 H 1.48500 * 109.46874 * 154.98679 * 3 2 1 7 7 C 1.40061 * 120.00408 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00246 * 186.28616 * 7 2 1 9 9 C 1.41274 * 119.99402 * 6.29411 * 7 2 1 10 10 C 1.40724 * 120.15334 * 173.76696 * 9 7 2 11 11 N 1.31903 * 119.92809 * 180.02562 * 10 9 7 12 12 C 1.32154 * 120.27236 * 359.97438 * 11 10 9 13 13 C 1.39920 * 120.32204 * 0.02562 * 12 11 10 14 14 N 1.38831 * 119.97002 * 179.97438 * 13 12 11 15 15 C 1.46952 * 111.02409 * 124.12645 * 14 13 12 16 16 C 1.53198 * 109.30733 * 172.51314 * 15 14 13 17 17 N 1.47458 * 108.48116 * 54.13219 * 16 15 14 18 18 C 1.34205 * 118.84735 * 129.32048 * 17 16 15 19 19 O 1.21276 * 119.28937 * 1.66857 * 18 17 16 20 20 C 1.50524 * 121.41827 * 181.67643 * 18 17 16 21 21 O 1.43145 * 108.60777 * 335.53410 * 20 18 17 22 22 C 1.42675 * 113.05183 * 56.00757 * 21 20 18 23 23 C 1.46035 * 118.26654 * 309.28255 * 17 16 15 24 24 H 1.09006 * 107.93378 * 292.25301 * 23 17 16 25 25 C 1.46906 * 111.00067 * 359.97438 * 14 13 12 26 26 N 1.32264 * 120.06483 * 0.25307 * 13 12 11 27 27 H 0.96998 * 119.99981 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.03457 * 0.04295 * 10 9 7 29 29 H 1.08003 * 119.84347 * 180.02562 * 12 11 10 30 30 H 1.08996 * 109.49744 * 52.56907 * 15 14 13 31 31 H 1.09003 * 109.52148 * 292.47858 * 15 14 13 32 32 H 1.09000 * 109.63776 * 294.43210 * 16 15 14 33 33 H 1.09001 * 109.63266 * 173.82606 * 16 15 14 34 34 H 1.09001 * 109.61620 * 215.79701 * 20 18 17 35 35 H 1.09001 * 109.61540 * 95.26675 * 20 18 17 36 36 H 1.09005 * 109.19681 * 175.32767 * 22 21 20 37 37 H 1.08994 * 109.16768 * 56.01271 * 22 21 20 38 38 H 1.08999 * 109.48230 * 66.68451 * 25 14 13 39 39 H 1.08997 * 109.48512 * 306.65360 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3833 2.1073 -1.3948 5 1 1.4954 2.6199 0.8028 6 1 3.5875 1.4120 0.5920 7 6 2.0076 -1.2129 -0.0005 8 1 3.0827 -1.2157 0.1019 9 6 1.3076 -2.4326 -0.1352 10 6 2.0142 -3.6423 -0.2679 11 7 1.3562 -4.7785 -0.3939 12 6 0.0346 -4.7863 -0.3956 13 6 -0.6790 -3.5899 -0.2644 14 7 -2.0672 -3.6065 -0.2676 15 6 -2.6049 -2.9724 0.9441 16 6 -4.1260 -2.8434 0.8159 17 7 -4.6843 -4.1745 0.5143 18 6 -5.7039 -4.6324 1.2570 19 8 -6.1602 -3.9312 2.1350 20 6 -6.2933 -5.9977 1.0239 21 8 -6.0334 -6.3823 -0.3302 22 6 -4.6461 -6.3540 -0.6626 23 6 -4.0992 -4.9368 -0.5853 24 1 -4.3357 -4.4198 -1.5154 25 6 -2.5770 -4.9759 -0.4198 26 7 -0.0323 -2.4426 -0.1428 27 1 -0.4850 0.8400 0.0004 28 1 3.0943 -3.6404 -0.2663 29 1 -0.4972 -5.7206 -0.4988 30 1 -2.1646 -1.9825 1.0626 31 1 -2.3636 -3.5845 1.8132 32 1 -4.3683 -2.1529 0.0080 33 1 -4.5427 -2.4754 1.7535 34 1 -7.3693 -5.9660 1.1951 35 1 -5.8332 -6.7157 1.7028 36 1 -4.5123 -6.7350 -1.6750 37 1 -4.0982 -6.9880 0.0343 38 1 -2.3227 -5.5589 0.4653 39 1 -2.1270 -5.4357 -1.2997 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167228441.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:05 Heat of formation + Delta-G solvation = -26.284868 kcal Electronic energy + Delta-G solvation = -25324.143859 eV Core-core repulsion = 21652.655707 eV Total energy + Delta-G solvation = -3671.488153 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.20474 -41.06412 -39.08160 -38.73975 -36.08833 -35.70145 -33.73452 -33.09256 -31.65472 -30.32118 -28.24293 -27.44444 -26.78689 -24.67084 -23.68747 -23.36297 -22.07431 -20.16151 -19.61337 -18.79944 -18.20702 -17.72214 -17.38770 -16.97544 -16.78170 -16.60177 -16.38088 -16.03154 -15.78834 -15.64960 -15.21940 -14.89298 -14.67212 -14.11458 -14.03090 -13.47564 -13.40408 -13.09673 -13.01449 -12.73519 -12.68465 -12.50967 -12.44907 -12.21025 -12.00776 -11.76374 -11.62634 -11.44703 -11.34839 -10.47701 -10.36262 -9.92136 -9.44662 -8.93241 -8.36006 -6.68557 0.59315 1.08741 1.32540 1.41467 1.52578 1.55942 1.62970 2.18212 2.50587 2.72375 2.80696 3.18152 3.60639 3.65079 3.75944 3.80930 3.95306 4.04875 4.08180 4.14603 4.20530 4.32526 4.35426 4.46050 4.50419 4.57087 4.69312 4.71293 4.75775 4.87989 4.91822 5.03362 5.12917 5.18687 5.55355 5.73073 5.78250 6.01442 6.15433 6.27254 6.55304 6.74179 6.85511 7.33573 7.92044 8.28713 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.021560 B = 0.004137 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.368595 B = 6766.339324 C = 7777.623827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.025 3.975 3 Si 0.991 3.009 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.251 1.251 7 C -0.434 4.434 8 H 0.103 0.897 9 C 0.197 3.803 10 C -0.106 4.106 11 N -0.424 5.424 12 C -0.163 4.163 13 C 0.282 3.718 14 N -0.476 5.476 15 C 0.070 3.930 16 C 0.123 3.877 17 N -0.601 5.601 18 C 0.479 3.521 19 O -0.585 6.585 20 C 0.056 3.944 21 O -0.368 6.368 22 C 0.056 3.944 23 C 0.117 3.883 24 H 0.090 0.910 25 C 0.049 3.951 26 N -0.494 5.494 27 H 0.284 0.716 28 H 0.146 0.854 29 H 0.161 0.839 30 H 0.084 0.916 31 H 0.027 0.973 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.148 0.852 35 H 0.116 0.884 36 H 0.149 0.851 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.637 -8.266 -0.809 12.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.199 4.199 3 Si 0.811 3.189 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.174 1.174 7 C -0.466 4.466 8 H 0.121 0.879 9 C 0.070 3.930 10 C -0.275 4.275 11 N -0.135 5.135 12 C -0.324 4.324 13 C 0.040 3.960 14 N -0.194 5.194 15 C -0.057 4.057 16 C 0.000 4.000 17 N -0.334 5.334 18 C 0.269 3.731 19 O -0.466 6.466 20 C -0.022 4.022 21 O -0.286 6.286 22 C -0.022 4.022 23 C 0.013 3.987 24 H 0.108 0.892 25 C -0.079 4.079 26 N -0.217 5.217 27 H 0.095 0.905 28 H 0.163 0.837 29 H 0.178 0.822 30 H 0.102 0.898 31 H 0.045 0.955 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.166 0.834 35 H 0.133 0.867 36 H 0.167 0.833 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.449 -7.597 -0.904 12.951 hybrid contribution 1.078 0.751 0.715 1.496 sum -9.371 -6.846 -0.188 11.607 Atomic orbital electron populations 1.70159 1.08975 1.29774 1.26830 1.27053 0.95745 1.04675 0.92467 0.85049 0.79268 0.75329 0.79296 1.18950 1.19344 1.17381 1.20096 0.95860 0.89854 1.40787 0.87887 1.19654 0.88603 0.94517 0.90246 1.23241 0.99948 0.89356 1.14959 1.67590 1.09320 1.29996 1.06640 1.23106 0.90872 0.97416 1.21022 1.20981 0.89972 0.91443 0.93653 1.58260 1.04098 1.19699 1.37361 1.22251 0.94617 1.00355 0.88482 1.21704 0.90952 0.84456 1.02866 1.47983 1.33584 1.18565 1.33298 1.22006 0.79502 0.91085 0.80552 1.90702 1.61796 1.59480 1.34601 1.23057 1.04342 0.89384 0.85466 1.88149 1.24882 1.87835 1.27714 1.22851 0.81607 0.91774 1.05942 1.21773 0.91645 0.95306 0.89985 0.89247 1.22695 0.94112 0.87602 1.03516 1.69125 1.08368 1.23777 1.20390 0.90545 0.83676 0.82170 0.89789 0.95489 0.90380 0.88763 0.83439 0.86687 0.83344 0.90003 0.92843 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.21 11.51 21.84 0.25 -36.95 16 2 C 0.02 1.18 5.49 85.30 0.47 1.65 16 3 Si 0.99 35.53 29.56 68.60 2.03 37.55 16 4 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 5 H -0.27 -9.31 7.11 99.48 0.71 -8.60 16 6 H -0.25 -8.56 7.11 99.48 0.71 -7.85 16 7 C -0.43 -22.06 9.15 23.46 0.21 -21.85 16 8 H 0.10 4.78 7.86 -2.91 -0.02 4.76 16 9 C 0.20 10.53 6.54 40.17 0.26 10.79 16 10 C -0.11 -5.29 10.97 85.29 0.94 -4.35 16 11 N -0.42 -20.38 10.47 -192.23 -2.01 -22.39 16 12 C -0.16 -7.15 10.01 85.05 0.85 -6.30 16 13 C 0.28 13.01 6.45 133.35 0.86 13.86 16 14 N -0.48 -17.87 4.71 -700.50 -3.30 -21.17 16 15 C 0.07 2.61 5.50 86.36 0.48 3.09 16 16 C 0.12 3.88 6.52 86.26 0.56 4.44 16 17 N -0.60 -16.25 3.00 -798.53 -2.39 -18.64 16 18 C 0.48 12.73 7.65 87.69 0.67 13.40 16 19 O -0.58 -19.96 16.25 -3.02 -0.05 -20.01 16 20 C 0.06 0.96 7.00 71.18 0.50 1.46 16 21 O -0.37 -6.29 10.86 -148.98 -1.62 -7.91 16 22 C 0.06 0.79 6.25 71.68 0.45 1.24 16 23 C 0.12 2.55 3.31 44.84 0.15 2.70 16 24 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 25 C 0.05 1.29 3.51 86.36 0.30 1.60 16 26 N -0.49 -26.26 7.34 -185.99 -1.37 -27.62 16 27 H 0.28 12.97 8.29 -92.71 -0.77 12.20 16 28 H 0.15 6.59 8.06 -2.91 -0.02 6.56 16 29 H 0.16 5.71 5.78 -2.91 -0.02 5.70 16 30 H 0.08 3.71 7.56 -2.39 -0.02 3.69 16 31 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 32 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.09 3.08 6.86 -2.39 -0.02 3.07 16 34 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.15 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.08 0.94 7.88 -2.39 -0.02 0.92 16 38 H 0.05 1.40 7.69 -2.39 -0.02 1.38 16 39 H 0.11 2.72 6.91 -2.39 -0.02 2.70 16 Total: -1.00 -68.65 319.09 -0.67 -69.32 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 1.08 Total: 26.09 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: 6.70 Total: 21.73 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -8.82 Total: -126.78 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -1.67 Total: -27.92 kcal Atomic # 14 Polarization: 35.53 SS G_CDS: 2.03 Total: 37.55 kcal Total: -68.65 -0.67 -69.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167228441.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.036 kcal (2) G-P(sol) polarization free energy of solvation -68.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds