Wall clock time and date at job start Fri Apr 10 2020 17:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 120.00019 * 2 1 4 4 H 1.48493 * 109.47120 * 270.00571 * 3 2 1 5 5 H 1.48506 * 109.46690 * 30.00647 * 3 2 1 6 6 H 1.48502 * 109.46871 * 150.00324 * 3 2 1 7 7 C 1.38815 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99627 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00031 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99950 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47369 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47300 * 180.02562 * 11 10 9 13 13 N 1.46494 * 109.47035 * 179.97438 * 12 11 10 14 14 C 1.34782 * 119.99985 * 179.97438 * 13 12 11 15 15 O 1.21562 * 119.99581 * 0.02562 * 14 13 12 16 16 C 1.47751 * 120.00117 * 180.02562 * 14 13 12 17 17 C 1.41107 * 126.30287 * 180.32288 * 16 14 13 18 18 C 1.36995 * 105.42084 * 180.11525 * 17 16 14 19 19 C 1.47332 * 126.63756 * 179.86057 * 18 17 16 20 20 C 1.36151 * 125.95405 * 179.71253 * 19 18 17 21 21 C 1.40873 * 106.72882 * 180.20948 * 20 19 18 22 22 C 1.34762 * 107.05960 * 359.62756 * 21 20 19 23 23 O 1.34326 * 108.70253 * 0.37981 * 22 21 20 24 24 N 1.36554 * 106.73263 * 359.60144 * 18 17 16 25 25 H 0.96997 * 125.02965 * 180.28696 * 24 18 17 26 26 N 1.28445 * 109.93893 * 0.26268 * 24 18 17 27 27 H 0.97000 * 120.00578 * 359.97438 * 1 2 3 28 28 H 0.97004 * 120.00417 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.46969 * 59.99898 * 10 9 7 30 30 H 1.08998 * 109.47585 * 300.00238 * 10 9 7 31 31 H 1.09008 * 109.47010 * 60.00296 * 11 10 9 32 32 H 1.08995 * 109.47409 * 300.00020 * 11 10 9 33 33 H 1.08999 * 109.47017 * 59.99912 * 12 11 10 34 34 H 1.08995 * 109.46893 * 300.00320 * 12 11 10 35 35 H 0.97005 * 120.00178 * 0.02562 * 13 12 11 36 36 H 1.07995 * 127.29127 * 359.97438 * 17 16 14 37 37 H 1.08002 * 126.63096 * 359.94007 * 20 19 18 38 38 H 1.07998 * 126.46634 * 179.73017 * 21 20 19 39 39 H 1.07995 * 125.64874 * 180.11356 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 6 5.6164 -2.1912 -0.0024 12 6 6.3814 -3.5162 -0.0030 13 7 7.8217 -3.2485 -0.0049 14 6 8.6976 -4.2729 -0.0052 15 8 8.2924 -5.4190 -0.0044 16 6 10.1502 -4.0029 -0.0065 17 6 11.1794 -4.9682 -0.0134 18 6 12.3486 -4.2542 -0.0092 19 6 13.7151 -4.8050 -0.0106 20 6 14.8685 -4.0816 -0.0119 21 6 15.9288 -5.0090 -0.0179 22 6 15.3782 -6.2390 -0.0116 23 8 14.0410 -6.1123 -0.0105 24 7 12.0026 -2.9333 -0.0094 25 1 12.6298 -2.1934 -0.0109 26 7 10.7235 -2.8155 -0.0078 27 1 -0.4851 0.8400 0.0004 28 1 3.8647 -0.3620 -0.0007 29 1 3.8485 -3.0425 -0.8908 30 1 3.8492 -3.0422 0.8891 31 1 5.8804 -1.6192 0.8873 32 1 5.8791 -1.6200 -0.8927 33 1 6.1174 -4.0878 -0.8927 34 1 6.1188 -4.0878 0.8871 35 1 8.1450 -2.3339 -0.0051 36 1 11.0688 -6.0425 -0.0183 37 1 14.9539 -3.0049 -0.0131 38 1 16.9838 -4.7779 -0.0245 39 1 15.9221 -7.1721 -0.0120 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167241695.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:07 Heat of formation + Delta-G solvation = 66.398319 kcal Electronic energy + Delta-G solvation = -22524.447766 eV Core-core repulsion = 18856.978657 eV Total energy + Delta-G solvation = -3667.469108 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.37341 -42.74128 -39.46458 -36.16073 -34.48384 -33.82984 -32.73317 -32.38076 -31.83119 -30.03235 -28.80217 -25.98577 -24.04916 -23.20967 -22.41816 -21.88743 -21.26585 -21.17161 -20.02681 -19.32833 -17.69265 -17.33019 -16.88454 -16.82888 -16.09349 -15.96134 -15.46996 -15.13208 -14.54218 -14.27344 -14.23103 -14.04916 -13.53983 -13.49831 -13.31823 -12.89268 -12.79086 -12.52255 -12.00299 -11.52151 -11.17001 -11.02280 -10.85834 -10.81714 -10.68435 -10.36662 -10.26305 -10.11714 -9.89433 -9.57888 -9.10128 -8.88459 -8.59334 -7.22423 -5.75228 -3.11113 0.43095 1.26672 1.73255 1.73884 2.29858 2.63646 3.05742 3.19432 3.38075 3.40528 3.45893 3.87082 3.99163 4.29942 4.37643 4.60221 4.69092 4.87835 4.98503 5.11260 5.18795 5.23997 5.30087 5.37855 5.53968 5.55505 5.79023 5.80449 5.84803 5.94978 5.99201 6.17211 6.26884 6.38067 6.45479 6.71717 6.74898 7.18236 7.48272 8.01203 8.06587 8.43610 9.22604 9.94748 10.14367 11.43148 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.040683 B = 0.001918 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.090707 B =14598.050959 C =15260.391125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.160 3.840 11 C -0.142 4.142 12 C 0.122 3.878 13 N -0.713 5.713 14 C 0.601 3.399 15 O -0.529 6.529 16 C -0.006 4.006 17 C -0.139 4.139 18 C 0.074 3.926 19 C 0.054 3.946 20 C -0.192 4.192 21 C -0.210 4.210 22 C -0.023 4.023 23 O -0.159 6.159 24 N -0.365 5.365 25 H 0.449 0.551 26 N -0.235 5.235 27 H 0.259 0.741 28 H 0.361 0.639 29 H 0.031 0.969 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.407 0.593 36 H 0.172 0.828 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.045 -9.100 -0.042 38.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.403 5.403 10 C 0.033 3.967 11 C -0.180 4.180 12 C -0.001 4.001 13 N -0.364 5.364 14 C 0.384 3.616 15 O -0.403 6.403 16 C -0.166 4.166 17 C -0.167 4.167 18 C -0.050 4.050 19 C 0.002 3.998 20 C -0.213 4.213 21 C -0.229 4.229 22 C -0.092 4.092 23 O -0.053 6.053 24 N -0.083 5.083 25 H 0.295 0.705 26 N -0.072 5.072 27 H 0.069 0.931 28 H 0.193 0.807 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.242 0.758 36 H 0.189 0.811 37 H 0.168 0.832 38 H 0.173 0.827 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 35.941 -9.165 -0.040 37.092 hybrid contribution 1.571 1.445 0.009 2.135 sum 37.512 -7.720 -0.031 38.298 Atomic orbital electron populations 1.69700 1.05098 1.25813 1.57591 1.24684 0.95259 0.97231 1.02056 0.86522 0.79174 0.84931 0.77738 1.21083 1.21728 1.20368 1.19083 0.80598 0.94841 1.42984 0.89116 1.42686 1.04097 1.02178 1.91293 1.20502 0.87597 0.89512 0.99139 1.22001 0.97121 0.96187 1.02740 1.21416 0.77600 0.98098 1.03031 1.45915 1.07030 1.09442 1.74043 1.16801 0.82808 0.85151 0.76856 1.90824 1.78491 1.20895 1.50076 1.21918 0.95445 0.89392 1.09796 1.21880 0.88549 1.01188 1.05097 1.18194 0.90758 0.84981 1.11048 1.18782 0.90932 0.81751 1.08375 1.21791 0.90999 1.00701 1.07790 1.21759 1.00696 0.92148 1.08259 1.24293 0.79368 1.00698 1.04835 1.84109 1.24871 1.25412 1.70936 1.43393 1.04930 1.06227 1.53705 0.70486 1.73568 0.90856 1.24745 1.18012 0.93061 0.80689 0.95090 0.95145 0.91253 0.91243 0.90797 0.90803 0.75839 0.81082 0.83189 0.82747 0.77258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.65 13.97 55.49 0.78 -28.88 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 22.21 27.74 -169.99 -4.71 17.49 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 7 C -0.25 -7.07 10.47 -15.06 -0.16 -7.22 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 9 N -0.76 -18.16 5.41 -59.91 -0.32 -18.49 16 10 C 0.16 3.06 6.26 -4.04 -0.03 3.04 16 11 C -0.14 -2.06 5.44 -26.73 -0.15 -2.20 16 12 C 0.12 1.61 5.67 -4.04 -0.02 1.59 16 13 N -0.71 -8.68 5.55 -61.28 -0.34 -9.02 16 14 C 0.60 8.15 7.83 -12.37 -0.10 8.06 16 15 O -0.53 -8.77 16.91 5.31 0.09 -8.68 16 16 C -0.01 -0.07 7.11 -82.88 -0.59 -0.65 16 17 C -0.14 -1.46 10.76 -38.94 -0.42 -1.88 16 18 C 0.07 0.63 7.10 -82.52 -0.59 0.04 16 19 C 0.05 0.41 7.17 -36.63 -0.26 0.14 16 20 C -0.19 -1.08 10.85 -39.34 -0.43 -1.50 16 21 C -0.21 -0.99 10.88 -39.82 -0.43 -1.43 16 22 C -0.02 -0.11 12.08 29.50 0.36 0.24 16 23 O -0.16 -1.24 10.67 4.45 0.05 -1.19 16 24 N -0.36 -2.59 6.90 33.25 0.23 -2.36 16 25 H 0.45 1.49 8.96 -190.46 -1.71 -0.21 16 26 N -0.23 -2.29 11.88 33.36 0.40 -1.89 16 27 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 28 H 0.36 8.35 5.53 -40.82 -0.23 8.12 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.41 4.25 8.19 -40.82 -0.33 3.91 16 36 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.15 0.46 8.06 -52.49 -0.42 0.03 16 38 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16 39 H 0.21 0.20 8.06 -52.49 -0.42 -0.22 16 LS Contribution 347.02 15.07 5.23 5.23 Total: -1.00 -36.40 347.02 -7.60 -44.00 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.09 Total: 5.56 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.90 Total: -1.77 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 0.74 Total: -60.64 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.14 Total: -9.87 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.40 -7.60 -44.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167241695.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.397 kcal (2) G-P(sol) polarization free energy of solvation -36.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds