Wall clock time and date at job start Fri Apr 10 2020 17:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 120.00019 * 2 1 4 4 H 1.48493 * 109.47120 * 270.00571 * 3 2 1 5 5 H 1.48506 * 109.46690 * 30.00647 * 3 2 1 6 6 H 1.48502 * 109.46871 * 150.00324 * 3 2 1 7 7 C 1.38815 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99627 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00031 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99950 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47369 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47300 * 180.02562 * 11 10 9 13 13 N 1.46494 * 109.47035 * 179.97438 * 12 11 10 14 14 C 1.34782 * 119.99985 * 179.97438 * 13 12 11 15 15 O 1.21562 * 119.99581 * 0.02562 * 14 13 12 16 16 C 1.47751 * 120.00117 * 180.02562 * 14 13 12 17 17 C 1.41107 * 126.30287 * 180.32288 * 16 14 13 18 18 C 1.36995 * 105.42084 * 180.11525 * 17 16 14 19 19 C 1.47332 * 126.63756 * 179.86057 * 18 17 16 20 20 C 1.36151 * 125.95405 * 179.71253 * 19 18 17 21 21 C 1.40873 * 106.72882 * 180.20948 * 20 19 18 22 22 C 1.34762 * 107.05960 * 359.62756 * 21 20 19 23 23 O 1.34326 * 108.70253 * 0.37981 * 22 21 20 24 24 N 1.36554 * 106.73263 * 359.60144 * 18 17 16 25 25 H 0.96997 * 125.02965 * 180.28696 * 24 18 17 26 26 N 1.28445 * 109.93893 * 0.26268 * 24 18 17 27 27 H 0.97000 * 120.00578 * 359.97438 * 1 2 3 28 28 H 0.97004 * 120.00417 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.46969 * 59.99898 * 10 9 7 30 30 H 1.08998 * 109.47585 * 300.00238 * 10 9 7 31 31 H 1.09008 * 109.47010 * 60.00296 * 11 10 9 32 32 H 1.08995 * 109.47409 * 300.00020 * 11 10 9 33 33 H 1.08999 * 109.47017 * 59.99912 * 12 11 10 34 34 H 1.08995 * 109.46893 * 300.00320 * 12 11 10 35 35 H 0.97005 * 120.00178 * 0.02562 * 13 12 11 36 36 H 1.07995 * 127.29127 * 359.97438 * 17 16 14 37 37 H 1.08002 * 126.63096 * 359.94007 * 20 19 18 38 38 H 1.07998 * 126.46634 * 179.73017 * 21 20 19 39 39 H 1.07995 * 125.64874 * 180.11356 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 6 5.6164 -2.1912 -0.0024 12 6 6.3814 -3.5162 -0.0030 13 7 7.8217 -3.2485 -0.0049 14 6 8.6976 -4.2729 -0.0052 15 8 8.2924 -5.4190 -0.0044 16 6 10.1502 -4.0029 -0.0065 17 6 11.1794 -4.9682 -0.0134 18 6 12.3486 -4.2542 -0.0092 19 6 13.7151 -4.8050 -0.0106 20 6 14.8685 -4.0816 -0.0119 21 6 15.9288 -5.0090 -0.0179 22 6 15.3782 -6.2390 -0.0116 23 8 14.0410 -6.1123 -0.0105 24 7 12.0026 -2.9333 -0.0094 25 1 12.6298 -2.1934 -0.0109 26 7 10.7235 -2.8155 -0.0078 27 1 -0.4851 0.8400 0.0004 28 1 3.8647 -0.3620 -0.0007 29 1 3.8485 -3.0425 -0.8908 30 1 3.8492 -3.0422 0.8891 31 1 5.8804 -1.6192 0.8873 32 1 5.8791 -1.6200 -0.8927 33 1 6.1174 -4.0878 -0.8927 34 1 6.1188 -4.0878 0.8871 35 1 8.1450 -2.3339 -0.0051 36 1 11.0688 -6.0425 -0.0183 37 1 14.9539 -3.0049 -0.0131 38 1 16.9838 -4.7779 -0.0245 39 1 15.9221 -7.1721 -0.0120 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167241695.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:07 Heat of formation + Delta-G solvation = 38.318581 kcal Electronic energy + Delta-G solvation = -22525.665395 eV Core-core repulsion = 18856.978657 eV Total energy + Delta-G solvation = -3668.686737 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.95664 -43.28867 -40.53405 -37.63368 -36.00398 -34.34589 -33.92321 -33.19295 -33.05107 -31.61507 -29.35102 -27.42302 -25.26588 -23.98575 -23.48033 -22.75778 -22.66456 -21.71152 -21.04438 -19.87336 -19.60749 -18.26687 -17.55702 -17.39970 -17.06077 -16.93380 -16.46671 -16.43233 -15.73773 -15.64095 -15.40884 -14.96543 -14.83480 -14.76130 -13.90819 -13.87348 -13.77204 -13.67948 -13.38768 -12.88017 -12.55031 -12.54899 -12.26427 -12.09206 -12.00364 -11.80808 -11.37984 -11.36594 -10.96944 -10.82228 -10.65882 -10.14267 -9.30481 -9.09781 -8.02378 -5.37090 -0.11449 0.40601 1.22569 1.29193 1.39048 1.43965 1.51257 1.79642 1.91703 2.22978 2.34259 2.49772 3.17667 3.28832 3.36526 3.56309 3.87636 3.97210 4.09208 4.13785 4.18819 4.24765 4.32987 4.45155 4.71520 4.73113 4.81023 4.89140 4.89971 5.01220 5.06083 5.23097 5.30242 5.34817 5.48536 5.75426 5.76348 6.04242 6.21176 6.34890 6.65444 7.06545 7.08177 7.83076 8.03692 9.19066 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.040683 B = 0.001918 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.090707 B =14598.050959 C =15260.391125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.961 3.039 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.247 1.247 7 C -0.242 4.242 8 H 0.054 0.946 9 N -0.758 5.758 10 C 0.154 3.846 11 C -0.123 4.123 12 C 0.130 3.870 13 N -0.703 5.703 14 C 0.600 3.400 15 O -0.567 6.567 16 C -0.025 4.025 17 C -0.167 4.167 18 C 0.092 3.908 19 C 0.014 3.986 20 C -0.177 4.177 21 C -0.221 4.221 22 C -0.020 4.020 23 O -0.183 6.183 24 N -0.343 5.343 25 H 0.467 0.533 26 N -0.234 5.234 27 H 0.258 0.742 28 H 0.368 0.632 29 H 0.028 0.972 30 H 0.027 0.973 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.417 0.583 36 H 0.165 0.835 37 H 0.176 0.824 38 H 0.179 0.821 39 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 41.200 -7.544 -0.019 41.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.258 4.258 3 Si 0.788 3.212 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.171 1.171 7 C -0.373 4.373 8 H 0.072 0.928 9 N -0.405 5.405 10 C 0.027 3.973 11 C -0.161 4.161 12 C 0.006 3.994 13 N -0.354 5.354 14 C 0.385 3.615 15 O -0.445 6.445 16 C -0.184 4.184 17 C -0.195 4.195 18 C -0.033 4.033 19 C -0.037 4.037 20 C -0.198 4.198 21 C -0.240 4.240 22 C -0.088 4.088 23 O -0.079 6.079 24 N -0.064 5.064 25 H 0.317 0.683 26 N -0.073 5.073 27 H 0.067 0.933 28 H 0.202 0.798 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.254 0.746 36 H 0.182 0.818 37 H 0.193 0.807 38 H 0.197 0.803 39 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 40.160 -7.590 -0.017 40.871 hybrid contribution 0.416 0.831 -0.002 0.930 sum 40.576 -6.759 -0.019 41.136 Atomic orbital electron populations 1.69898 1.07299 1.26827 1.59463 1.25604 0.96221 1.01626 1.02339 0.85319 0.78732 0.78962 0.78219 1.20233 1.22259 1.17122 1.19066 0.82844 0.93579 1.41801 0.92784 1.42657 1.02464 1.04226 1.91114 1.20661 0.90359 0.87564 0.98687 1.21768 0.93530 0.96877 1.03947 1.21220 0.78202 0.97327 1.02692 1.45759 1.06347 1.09839 1.73447 1.17054 0.83769 0.84678 0.76002 1.90794 1.79333 1.22373 1.51972 1.21599 0.94480 0.90386 1.11926 1.21911 0.89310 1.01183 1.07075 1.18234 0.90905 0.85081 1.09050 1.18826 0.90881 0.82212 1.11752 1.22235 0.90388 1.02118 1.05014 1.22158 1.01776 0.91848 1.08185 1.25120 0.78436 1.02419 1.02808 1.84097 1.26459 1.25806 1.71488 1.43416 1.04474 1.06531 1.51973 0.68319 1.73493 0.91843 1.23810 1.18110 0.93281 0.79818 0.95419 0.95517 0.90072 0.89956 0.91252 0.91285 0.74571 0.81751 0.80676 0.80345 0.74065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.95 13.97 21.65 0.30 -63.65 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 3 Si 0.96 45.24 27.74 68.60 1.90 47.15 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.25 -10.27 6.52 99.48 0.65 -9.63 16 7 C -0.24 -14.11 10.47 84.03 0.88 -13.23 16 8 H 0.05 3.47 8.06 -2.91 -0.02 3.44 16 9 N -0.76 -35.53 5.41 -343.46 -1.86 -37.39 16 10 C 0.15 5.76 6.26 86.38 0.54 6.30 16 11 C -0.12 -3.30 5.44 30.60 0.17 -3.13 16 12 C 0.13 3.30 5.67 86.38 0.49 3.79 16 13 N -0.70 -16.35 5.55 -466.07 -2.59 -18.94 16 14 C 0.60 16.34 7.83 86.76 0.68 17.02 16 15 O -0.57 -19.40 16.91 -3.91 -0.07 -19.47 16 16 C -0.03 -0.58 7.11 42.36 0.30 -0.28 16 17 C -0.17 -3.56 10.76 22.68 0.24 -3.32 16 18 C 0.09 1.48 7.10 40.51 0.29 1.77 16 19 C 0.01 0.20 7.17 24.18 0.17 0.37 16 20 C -0.18 -1.50 10.85 22.43 0.24 -1.25 16 21 C -0.22 -1.43 10.88 22.12 0.24 -1.19 16 22 C -0.02 -0.15 12.08 67.02 0.81 0.66 16 23 O -0.18 -2.68 10.67 -6.99 -0.07 -2.75 16 24 N -0.34 -4.24 6.90 -48.73 -0.34 -4.57 16 25 H 0.47 1.82 8.96 -220.01 -1.97 -0.16 16 26 N -0.23 -4.24 11.88 -48.38 -0.57 -4.81 16 27 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 28 H 0.37 16.03 5.53 -92.71 -0.51 15.51 16 29 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 30 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.42 7.90 8.19 -92.70 -0.76 7.14 16 36 H 0.16 3.55 8.06 -2.91 -0.02 3.52 16 37 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 38 H 0.18 0.21 8.06 -2.91 -0.02 0.18 16 39 H 0.24 -0.25 8.06 -2.91 -0.02 -0.27 16 Total: -1.00 -80.75 347.02 0.05 -80.70 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -2.19 Total: 19.73 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 5.52 Total: 4.00 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -5.05 Total: -129.36 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.14 Total: -22.22 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.90 Total: 47.15 kcal Total: -80.75 0.05 -80.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167241695.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.018 kcal (2) G-P(sol) polarization free energy of solvation -80.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds