Wall clock time and date at job start Fri Apr 10 2020 17:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99778 * 2 1 4 4 H 1.48498 * 109.46949 * 269.99342 * 3 2 1 5 5 H 1.48497 * 109.47376 * 29.99469 * 3 2 1 6 6 H 1.48503 * 109.46992 * 149.99938 * 3 2 1 7 7 C 1.38807 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00525 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99541 * 180.02562 * 7 2 1 10 10 C 1.46507 * 119.99912 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47485 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 N 1.46505 * 109.47212 * 179.97438 * 12 11 10 14 14 C 1.34771 * 119.99622 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00597 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99622 * 179.97438 * 14 13 12 17 17 H 1.09007 * 109.38358 * 60.21374 * 16 14 13 18 18 C 1.52583 * 109.38919 * 300.52757 * 16 14 13 19 19 C 1.52587 * 110.64896 * 169.85436 * 18 16 14 20 20 C 1.53033 * 109.98538 * 69.98591 * 19 18 16 21 21 S 1.81678 * 109.00041 * 296.35594 * 20 19 18 22 22 O 1.42092 * 108.65929 * 299.96918 * 21 20 19 23 23 O 1.42095 * 108.74595 * 168.65500 * 21 20 19 24 24 C 1.53038 * 109.38421 * 180.02562 * 16 14 13 25 25 H 0.96993 * 119.99898 * 0.02562 * 1 2 3 26 26 H 0.96992 * 120.00517 * 0.02562 * 9 7 2 27 27 H 1.09002 * 109.47280 * 59.99883 * 10 9 7 28 28 H 1.09001 * 109.46702 * 300.00076 * 10 9 7 29 29 H 1.09002 * 109.47103 * 59.99596 * 11 10 9 30 30 H 1.08998 * 109.46862 * 300.00408 * 11 10 9 31 31 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 32 32 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 33 33 H 0.96996 * 119.99606 * 0.02562 * 13 12 11 34 34 H 1.09001 * 109.24689 * 290.15912 * 18 16 14 35 35 H 1.09005 * 109.23970 * 49.55263 * 18 16 14 36 36 H 1.09001 * 109.38458 * 309.83353 * 19 18 16 37 37 H 1.09001 * 109.38986 * 190.14945 * 19 18 16 38 38 H 1.08999 * 109.54962 * 176.49984 * 20 19 18 39 39 H 1.09002 * 109.55052 * 56.20911 * 20 19 18 40 40 H 1.08995 * 109.55139 * 303.66372 * 24 16 14 41 41 H 1.08997 * 109.55185 * 63.85814 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4709 0.0011 11 6 5.6164 -2.1914 0.0024 12 6 6.3814 -3.5164 0.0030 13 7 7.8217 -3.2487 0.0036 14 6 8.6975 -4.2731 0.0048 15 8 8.2932 -5.4165 0.0048 16 6 10.1791 -3.9977 0.0048 17 1 10.4413 -3.4285 0.8968 18 6 10.5438 -3.1875 -1.2356 19 6 11.9795 -2.6791 -1.1434 20 6 12.9580 -3.8478 -1.2793 21 16 12.7229 -4.9820 0.1203 22 8 12.9734 -4.2738 1.3264 23 8 13.4345 -6.1838 -0.1412 24 6 10.9423 -5.3242 0.0056 25 1 -0.4850 0.8400 -0.0004 26 1 3.8646 -0.3621 0.0014 27 1 3.8492 -3.0423 -0.8891 28 1 3.8485 -3.0426 0.8908 29 1 5.8790 -1.6202 0.8928 30 1 5.8803 -1.6194 -0.8871 31 1 6.1188 -4.0880 -0.8872 32 1 6.1173 -4.0879 0.8928 33 1 8.1450 -2.3342 0.0040 34 1 10.4420 -3.8178 -2.1191 35 1 9.8665 -2.3377 -1.3216 36 1 12.1295 -2.1919 -0.1799 37 1 12.1609 -1.9604 -1.9425 38 1 13.9804 -3.4699 -1.2748 39 1 12.7672 -4.3765 -2.2132 40 1 10.6306 -5.9239 0.8607 41 1 10.7320 -5.8665 -0.9162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167536297.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:25 Heat of formation + Delta-G solvation = -106.899686 kcal Electronic energy + Delta-G solvation = -22514.451934 eV Core-core repulsion = 18942.619260 eV Total energy + Delta-G solvation = -3571.832673 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.42723 -37.72922 -37.00449 -36.48872 -36.25614 -34.60741 -32.63174 -32.00717 -30.17129 -28.29335 -26.12750 -24.40732 -22.46387 -22.02487 -21.38411 -20.31491 -19.36819 -18.13382 -17.49203 -17.04946 -16.42898 -16.23309 -16.07258 -15.94344 -15.47485 -15.10115 -14.61024 -14.22780 -14.09437 -13.93943 -13.58034 -13.50106 -12.87885 -12.71472 -12.59920 -12.54106 -12.47925 -12.13708 -12.09723 -11.98888 -11.65454 -11.33038 -11.27016 -11.10853 -10.91807 -10.81880 -10.78080 -10.22213 -10.01069 -9.64321 -9.28305 -8.95682 -7.30077 -5.81485 -3.18119 -0.49895 2.12240 2.28971 2.86466 3.15791 3.31819 3.33837 3.36773 3.40572 3.77685 3.91491 4.03777 4.10179 4.27608 4.49460 4.53782 4.58775 4.74878 4.87413 4.88238 4.98340 5.10521 5.17754 5.23626 5.36054 5.40239 5.45011 5.48559 5.70437 5.83143 5.86224 6.04519 6.21468 6.60935 6.63964 7.20651 7.91351 7.94218 8.37172 9.15560 9.87501 10.06645 11.36820 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.034620 B = 0.002295 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.594289 B =12197.122834 C =12683.945806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.160 3.840 11 C -0.142 4.142 12 C 0.121 3.879 13 N -0.725 5.725 14 C 0.521 3.479 15 O -0.533 6.533 16 C -0.099 4.099 17 H 0.120 0.880 18 C -0.136 4.136 19 C -0.109 4.109 20 C -0.606 4.606 21 S 2.418 3.582 22 O -0.935 6.935 23 O -0.940 6.940 24 C -0.585 4.585 25 H 0.260 0.740 26 H 0.361 0.639 27 H 0.030 0.970 28 H 0.030 0.970 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.401 0.599 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.144 0.856 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.618 -5.971 -3.448 30.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.193 4.193 3 Si 0.718 3.282 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.403 5.403 10 C 0.032 3.968 11 C -0.180 4.180 12 C -0.003 4.003 13 N -0.377 5.377 14 C 0.305 3.695 15 O -0.409 6.409 16 C -0.121 4.121 17 H 0.137 0.863 18 C -0.174 4.174 19 C -0.147 4.147 20 C -0.735 4.735 21 S 2.600 3.400 22 O -0.932 6.932 23 O -0.937 6.937 24 C -0.714 4.714 25 H 0.070 0.930 26 H 0.193 0.807 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.236 0.764 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.162 0.838 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 29.695 -7.226 -2.832 30.693 hybrid contribution 0.054 1.897 -0.607 1.992 sum 29.749 -5.330 -3.439 30.418 Atomic orbital electron populations 1.69705 1.05110 1.25891 1.57385 1.24702 0.95287 0.97299 1.01971 0.86505 0.79133 0.84874 0.77712 1.21078 1.21676 1.20399 1.19065 0.80544 0.94840 1.43215 0.89148 1.42682 1.04135 1.02116 1.91327 1.20494 0.87582 0.89567 0.99110 1.21998 0.97251 0.96139 1.02638 1.21390 0.77937 0.98035 1.02890 1.46059 1.07248 1.09299 1.75087 1.20155 0.87644 0.85319 0.76384 1.90733 1.79943 1.21270 1.48983 1.21077 0.93777 0.95192 1.02043 0.86255 1.21779 0.97365 1.01070 0.97195 1.21276 0.91659 0.96316 1.05421 1.30272 1.09096 1.13728 1.20453 1.08055 0.78063 0.76436 0.77418 1.93599 1.83543 1.74161 1.41925 1.93613 1.69524 1.44604 1.85956 1.30184 1.22544 1.05120 1.13584 0.92993 0.80687 0.95171 0.95211 0.91262 0.91297 0.91015 0.91006 0.76421 0.89669 0.88864 0.89274 0.88790 0.84570 0.84666 0.83787 0.84067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.13 13.97 55.49 0.78 -28.35 16 2 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 21.58 27.74 -169.99 -4.71 16.87 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 7 C -0.25 -6.93 10.47 -15.06 -0.16 -7.09 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 9 N -0.76 -17.48 5.41 -59.91 -0.32 -17.80 16 10 C 0.16 2.90 6.26 -4.04 -0.03 2.87 16 11 C -0.14 -1.82 5.44 -26.74 -0.15 -1.97 16 12 C 0.12 1.38 5.67 -4.04 -0.02 1.36 16 13 N -0.73 -6.38 5.36 -60.29 -0.32 -6.70 16 14 C 0.52 5.06 7.15 -10.99 -0.08 4.98 16 15 O -0.53 -7.42 15.94 5.56 0.09 -7.33 16 16 C -0.10 -0.58 2.35 -91.96 -0.22 -0.80 16 17 H 0.12 0.53 8.01 -51.93 -0.42 0.11 16 18 C -0.14 -0.46 4.90 -27.16 -0.13 -0.60 16 19 C -0.11 -0.27 5.73 -26.93 -0.15 -0.43 16 20 C -0.61 -1.69 6.35 37.17 0.24 -1.46 16 21 S 2.42 14.81 5.31 -107.50 -0.57 14.24 16 22 O -0.94 -8.76 17.94 -57.82 -1.04 -9.80 16 23 O -0.94 -9.44 18.10 -57.82 -1.05 -10.48 16 24 C -0.59 -3.52 4.94 37.18 0.18 -3.34 16 25 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.36 7.97 5.53 -40.82 -0.23 7.75 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.40 2.37 7.75 -40.82 -0.32 2.05 16 34 H 0.08 0.25 8.09 -51.93 -0.42 -0.17 16 35 H 0.09 0.23 7.23 -51.93 -0.38 -0.15 16 36 H 0.09 0.20 8.01 -51.93 -0.42 -0.21 16 37 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 38 H 0.14 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.14 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.14 0.97 8.00 -51.93 -0.42 0.55 16 41 H 0.14 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 345.68 15.07 5.21 5.21 Total: -1.00 -39.59 345.68 -8.96 -48.55 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.40 Total: 2.07 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -0.61 Total: -6.47 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.13 Total: -52.85 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -2.00 Total: -27.61 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.87 kcal Atomic # 16 Polarization: 14.81 SS G_CDS: -0.57 Total: 14.24 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -39.59 -8.96 -48.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167536297.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.353 kcal (2) G-P(sol) polarization free energy of solvation -39.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds