Wall clock time and date at job start Fri Apr 10 2020 17:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99778 * 2 1 4 4 H 1.48498 * 109.46949 * 269.99342 * 3 2 1 5 5 H 1.48497 * 109.47376 * 29.99469 * 3 2 1 6 6 H 1.48503 * 109.46992 * 149.99938 * 3 2 1 7 7 C 1.38807 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00525 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99541 * 180.02562 * 7 2 1 10 10 C 1.46507 * 119.99912 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47485 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 N 1.46505 * 109.47212 * 179.97438 * 12 11 10 14 14 C 1.34771 * 119.99622 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00597 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99622 * 179.97438 * 14 13 12 17 17 H 1.09007 * 109.38358 * 60.21374 * 16 14 13 18 18 C 1.52583 * 109.38919 * 300.52757 * 16 14 13 19 19 C 1.52587 * 110.64896 * 169.85436 * 18 16 14 20 20 C 1.53033 * 109.98538 * 69.98591 * 19 18 16 21 21 S 1.81678 * 109.00041 * 296.35594 * 20 19 18 22 22 O 1.42092 * 108.65929 * 299.96918 * 21 20 19 23 23 O 1.42095 * 108.74595 * 168.65500 * 21 20 19 24 24 C 1.53038 * 109.38421 * 180.02562 * 16 14 13 25 25 H 0.96993 * 119.99898 * 0.02562 * 1 2 3 26 26 H 0.96992 * 120.00517 * 0.02562 * 9 7 2 27 27 H 1.09002 * 109.47280 * 59.99883 * 10 9 7 28 28 H 1.09001 * 109.46702 * 300.00076 * 10 9 7 29 29 H 1.09002 * 109.47103 * 59.99596 * 11 10 9 30 30 H 1.08998 * 109.46862 * 300.00408 * 11 10 9 31 31 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 32 32 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 33 33 H 0.96996 * 119.99606 * 0.02562 * 13 12 11 34 34 H 1.09001 * 109.24689 * 290.15912 * 18 16 14 35 35 H 1.09005 * 109.23970 * 49.55263 * 18 16 14 36 36 H 1.09001 * 109.38458 * 309.83353 * 19 18 16 37 37 H 1.09001 * 109.38986 * 190.14945 * 19 18 16 38 38 H 1.08999 * 109.54962 * 176.49984 * 20 19 18 39 39 H 1.09002 * 109.55052 * 56.20911 * 20 19 18 40 40 H 1.08995 * 109.55139 * 303.66372 * 24 16 14 41 41 H 1.08997 * 109.55185 * 63.85814 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4709 0.0011 11 6 5.6164 -2.1914 0.0024 12 6 6.3814 -3.5164 0.0030 13 7 7.8217 -3.2487 0.0036 14 6 8.6975 -4.2731 0.0048 15 8 8.2932 -5.4165 0.0048 16 6 10.1791 -3.9977 0.0048 17 1 10.4413 -3.4285 0.8968 18 6 10.5438 -3.1875 -1.2356 19 6 11.9795 -2.6791 -1.1434 20 6 12.9580 -3.8478 -1.2793 21 16 12.7229 -4.9820 0.1203 22 8 12.9734 -4.2738 1.3264 23 8 13.4345 -6.1838 -0.1412 24 6 10.9423 -5.3242 0.0056 25 1 -0.4850 0.8400 -0.0004 26 1 3.8646 -0.3621 0.0014 27 1 3.8492 -3.0423 -0.8891 28 1 3.8485 -3.0426 0.8908 29 1 5.8790 -1.6202 0.8928 30 1 5.8803 -1.6194 -0.8871 31 1 6.1188 -4.0880 -0.8872 32 1 6.1173 -4.0879 0.8928 33 1 8.1450 -2.3342 0.0040 34 1 10.4420 -3.8178 -2.1191 35 1 9.8665 -2.3377 -1.3216 36 1 12.1295 -2.1919 -0.1799 37 1 12.1609 -1.9604 -1.9425 38 1 13.9804 -3.4699 -1.2748 39 1 12.7672 -4.3765 -2.2132 40 1 10.6306 -5.9239 0.8607 41 1 10.7320 -5.8665 -0.9162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167536297.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:25 Heat of formation + Delta-G solvation = -140.132795 kcal Electronic energy + Delta-G solvation = -22515.893029 eV Core-core repulsion = 18942.619260 eV Total energy + Delta-G solvation = -3573.273769 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.15031 -38.30462 -37.75044 -37.29459 -37.08527 -35.99512 -33.89342 -32.95829 -31.66918 -28.71872 -27.30866 -25.35541 -23.79199 -22.69091 -22.55274 -21.08539 -19.84626 -19.65557 -18.59245 -17.59171 -17.15018 -16.88139 -16.84422 -16.64975 -16.39681 -16.09869 -15.76669 -15.49618 -14.84537 -14.80001 -14.71836 -14.27920 -13.91199 -13.80668 -13.78064 -13.25777 -13.11121 -13.00777 -12.87317 -12.55197 -12.50093 -12.42469 -12.37425 -12.08233 -12.00002 -11.92447 -11.80812 -11.79456 -11.24673 -10.97725 -10.75072 -10.12604 -9.32035 -8.03234 -5.38562 -0.95405 1.38814 1.44697 1.52187 1.55939 1.68654 2.15454 2.49642 2.71924 2.93726 3.27908 3.34307 3.55996 3.57787 3.71691 3.78466 3.93337 4.04584 4.08865 4.24884 4.27679 4.35181 4.46995 4.66027 4.70609 4.72634 4.73455 4.86697 4.89914 5.07210 5.12113 5.25379 5.28700 5.29377 5.40873 5.74488 6.20282 6.52550 7.07388 7.21048 7.81679 8.02866 9.18300 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.034620 B = 0.002295 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.594289 B =12197.122834 C =12683.945806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.070 4.070 3 Si 0.965 3.035 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.244 1.244 7 C -0.243 4.243 8 H 0.051 0.949 9 N -0.758 5.758 10 C 0.153 3.847 11 C -0.122 4.122 12 C 0.129 3.871 13 N -0.713 5.713 14 C 0.518 3.482 15 O -0.582 6.582 16 C -0.095 4.095 17 H 0.135 0.865 18 C -0.137 4.137 19 C -0.110 4.110 20 C -0.582 4.582 21 S 2.423 3.577 22 O -0.974 6.974 23 O -0.988 6.988 24 C -0.588 4.588 25 H 0.259 0.741 26 H 0.370 0.630 27 H 0.025 0.975 28 H 0.021 0.979 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.419 0.581 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.119 0.881 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.128 0.872 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.610 -3.496 -4.671 33.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.261 4.261 3 Si 0.791 3.209 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.168 1.168 7 C -0.373 4.373 8 H 0.069 0.931 9 N -0.404 5.404 10 C 0.026 3.974 11 C -0.160 4.160 12 C 0.004 3.996 13 N -0.366 5.366 14 C 0.304 3.696 15 O -0.462 6.462 16 C -0.117 4.117 17 H 0.153 0.847 18 C -0.175 4.175 19 C -0.148 4.148 20 C -0.715 4.715 21 S 2.610 3.390 22 O -0.971 6.971 23 O -0.985 6.985 24 C -0.717 4.717 25 H 0.067 0.933 26 H 0.203 0.797 27 H 0.043 0.957 28 H 0.039 0.961 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.257 0.743 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.112 0.888 37 H 0.137 0.863 38 H 0.174 0.826 39 H 0.177 0.823 40 H 0.146 0.854 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 32.755 -4.776 -4.020 33.344 hybrid contribution -0.947 1.028 -0.263 1.422 sum 31.808 -3.748 -4.283 32.313 Atomic orbital electron populations 1.69912 1.07426 1.26911 1.59377 1.25670 0.96274 1.01879 1.02267 0.85267 0.78744 0.78594 0.78285 1.20061 1.22469 1.16806 1.19037 0.82917 0.93460 1.41932 0.93077 1.42644 1.02410 1.04262 1.91108 1.20668 0.90895 0.87510 0.98328 1.21763 0.93127 0.96990 1.04144 1.21098 0.79513 0.96999 1.01943 1.45876 1.05941 1.10292 1.74443 1.20826 0.89201 0.84550 0.75005 1.90718 1.80979 1.23277 1.51187 1.21174 0.90564 0.95535 1.04443 0.84707 1.21874 0.98491 1.01321 0.95789 1.21382 0.90460 0.96228 1.06713 1.30101 1.10638 1.12533 1.18202 1.07701 0.77293 0.76021 0.78001 1.93542 1.83999 1.74490 1.45056 1.93548 1.70616 1.47527 1.86778 1.30172 1.22517 1.05555 1.13422 0.93266 0.79672 0.95709 0.96084 0.89993 0.89446 0.91851 0.92406 0.74307 0.88898 0.87231 0.88821 0.86295 0.82644 0.82259 0.85357 0.83307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.07 13.97 21.65 0.30 -62.76 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 3 Si 0.97 43.66 27.74 68.60 1.90 45.57 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.24 -9.57 6.52 99.48 0.65 -8.92 16 7 C -0.24 -13.79 10.47 84.03 0.88 -12.91 16 8 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 9 N -0.76 -33.92 5.41 -343.45 -1.86 -35.78 16 10 C 0.15 5.37 6.26 86.38 0.54 5.91 16 11 C -0.12 -2.78 5.44 30.59 0.17 -2.62 16 12 C 0.13 2.73 5.67 86.38 0.49 3.22 16 13 N -0.71 -10.69 5.36 -463.06 -2.48 -13.17 16 14 C 0.52 9.26 7.15 87.66 0.63 9.89 16 15 O -0.58 -16.17 15.94 -3.03 -0.05 -16.22 16 16 C -0.10 -0.91 2.35 -11.67 -0.03 -0.94 16 17 H 0.14 0.87 8.01 -2.38 -0.02 0.85 16 18 C -0.14 -0.38 4.90 30.32 0.15 -0.23 16 19 C -0.11 -0.04 5.73 30.47 0.17 0.14 16 20 C -0.58 -1.09 6.35 71.99 0.46 -0.64 16 21 S 2.42 27.69 5.31 -56.49 -0.30 27.39 16 22 O -0.97 -17.85 17.94 -127.38 -2.28 -20.14 16 23 O -0.99 -20.11 18.10 -127.38 -2.31 -22.42 16 24 C -0.59 -6.72 4.94 71.99 0.36 -6.36 16 25 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 26 H 0.37 15.12 5.53 -92.71 -0.51 14.61 16 27 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.42 3.27 7.75 -92.71 -0.72 2.55 16 34 H 0.09 0.17 8.09 -2.39 -0.02 0.15 16 35 H 0.11 0.00 7.23 -2.38 -0.02 -0.02 16 36 H 0.09 0.03 8.01 -2.39 -0.02 0.01 16 37 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 38 H 0.16 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.16 -0.34 8.14 -2.39 -0.02 -0.36 16 40 H 0.13 1.86 8.00 -2.39 -0.02 1.84 16 41 H 0.15 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -89.42 345.68 -3.05 -92.46 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -0.25 Total: 13.20 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 4.28 Total: -8.14 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -4.04 Total: -111.71 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -4.64 Total: -58.77 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.90 Total: 45.57 kcal Atomic # 16 Polarization: 27.69 SS G_CDS: -0.30 Total: 27.39 kcal Total: -89.42 -3.05 -92.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167536297.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.671 kcal (2) G-P(sol) polarization free energy of solvation -89.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds