Wall clock time and date at job start Fri Apr 10 2020 17:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86792 * 120.00038 * 2 1 4 4 H 1.48499 * 109.47066 * 269.99965 * 3 2 1 5 5 H 1.48498 * 109.47239 * 29.99650 * 3 2 1 6 6 H 1.48497 * 109.47337 * 149.99942 * 3 2 1 7 7 C 1.39938 * 119.99610 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99428 * 197.73520 * 7 2 1 9 9 C 1.41437 * 120.00484 * 17.73004 * 7 2 1 10 10 C 1.40781 * 120.17984 * 204.35691 * 9 7 2 11 11 C 1.37712 * 120.04152 * 180.02562 * 10 9 7 12 12 C 1.38371 * 120.41172 * 359.95436 * 11 10 9 13 13 C 1.39880 * 120.35562 * 0.02767 * 12 11 10 14 14 C 1.47891 * 120.02138 * 180.02562 * 13 12 11 15 15 O 1.21548 * 119.99549 * 179.97438 * 14 13 12 16 16 N 1.34771 * 120.00388 * 359.97438 * 14 13 12 17 17 C 1.46494 * 120.00400 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47556 * 180.02562 * 17 16 14 19 19 H 1.09000 * 109.73325 * 59.58425 * 18 17 16 20 20 C 1.53017 * 109.60708 * 179.97438 * 18 17 16 21 21 N 1.46088 * 109.92471 * 168.91866 * 20 18 17 22 22 C 1.33868 * 122.54190 * 341.63725 * 21 20 18 23 23 O 1.21283 * 118.83609 * 181.88631 * 22 21 20 24 24 C 1.50352 * 122.33154 * 1.90836 * 22 21 20 25 25 O 1.42981 * 109.80402 * 344.06127 * 24 22 21 26 26 C 1.39029 * 119.95307 * 0.26455 * 13 12 11 27 27 H 0.97000 * 120.00179 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.98062 * 0.02647 * 10 9 7 29 29 H 1.07995 * 119.79421 * 179.97438 * 11 10 9 30 30 H 1.07997 * 119.81940 * 179.97438 * 12 11 10 31 31 H 0.97007 * 119.99944 * 0.02562 * 16 14 13 32 32 H 1.09000 * 109.47385 * 59.99607 * 17 16 14 33 33 H 1.09004 * 109.47101 * 299.99785 * 17 16 14 34 34 H 1.08997 * 109.39377 * 289.05704 * 20 18 17 35 35 H 1.09002 * 109.39629 * 48.86673 * 20 18 17 36 36 H 0.96999 * 118.72929 * 161.66742 * 21 20 18 37 37 H 1.08998 * 109.41620 * 104.18050 * 24 22 21 38 38 H 1.09000 * 109.41125 * 224.04165 * 24 22 21 39 39 H 1.07999 * 120.20774 * 179.70160 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4397 2.6526 0.6999 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2119 0.0005 8 1 3.0495 -1.2340 0.2855 9 6 1.3512 -2.4079 -0.3719 10 6 1.8275 -3.6500 0.0889 11 6 1.1861 -4.8127 -0.2760 12 6 0.0715 -4.7706 -1.0948 13 6 -0.4164 -3.5457 -1.5621 14 6 -1.6086 -3.5092 -2.4365 15 8 -2.0325 -2.4446 -2.8419 16 7 -2.2250 -4.6563 -2.7838 17 6 -3.4056 -4.6202 -3.6504 18 6 -3.9077 -6.0458 -3.8882 19 1 -4.1656 -6.5088 -2.9357 20 6 -5.1414 -6.0115 -4.7927 21 7 -5.4699 -7.3635 -5.2381 22 6 -4.5911 -8.3720 -5.1866 23 8 -4.9241 -9.4601 -5.6065 24 6 -3.2060 -8.2039 -4.6264 25 8 -2.8859 -6.8134 -4.5352 26 6 0.2231 -2.3631 -1.2080 27 1 -0.4850 0.8400 -0.0004 28 1 2.6964 -3.6910 0.7290 29 1 1.5552 -5.7634 0.0795 30 1 -0.4238 -5.6883 -1.3753 31 1 -1.8869 -5.5059 -2.4600 32 1 -3.1422 -4.1635 -4.6044 33 1 -4.1901 -4.0343 -3.1714 34 1 -5.9845 -5.5978 -4.2393 35 1 -4.9363 -5.3855 -5.6611 36 1 -6.3590 -7.5370 -5.5849 37 1 -3.1596 -8.6525 -3.6341 38 1 -2.4880 -8.6977 -5.2812 39 1 -0.1473 -1.4156 -1.5704 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188687052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:37 Heat of formation + Delta-G solvation = -96.724110 kcal Electronic energy + Delta-G solvation = -23877.090853 eV Core-core repulsion = 20170.255475 eV Total energy + Delta-G solvation = -3706.835379 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.92433 -39.27061 -38.15895 -37.00440 -35.20055 -34.50582 -33.72991 -31.33331 -29.92277 -29.44206 -27.84940 -26.11618 -25.22142 -23.22949 -22.00018 -20.94099 -20.31282 -19.39528 -18.09113 -17.93967 -17.58858 -16.58229 -15.95991 -15.89523 -15.51974 -15.08955 -14.91981 -14.73140 -14.55623 -14.40985 -13.77999 -13.69661 -13.22912 -13.09990 -12.67788 -12.54814 -12.49845 -12.07162 -11.69622 -11.61691 -11.18716 -11.10415 -10.91346 -10.73888 -10.51488 -10.05085 -9.88313 -9.70866 -9.59434 -9.23658 -9.08298 -8.76088 -7.65255 -7.53893 -6.81985 -4.43130 2.09552 2.17982 2.61473 2.79892 3.06776 3.09871 3.14452 3.19027 3.44585 3.83528 3.90712 4.03486 4.30780 4.45344 4.55192 4.62008 4.77669 4.90845 5.06706 5.22814 5.43163 5.55943 5.60002 5.83823 6.06984 6.13256 6.25808 6.47179 6.69852 6.74491 6.75542 6.96750 6.99658 7.19411 7.36095 7.66575 7.67856 7.73083 7.90260 8.04582 8.16638 8.48763 8.78392 8.81448 8.89079 10.12802 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.029720 B = 0.002831 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.887655 B = 9889.762639 C =10660.611553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.211 4.211 11 C -0.098 4.098 12 C -0.217 4.217 13 C -0.128 4.128 14 C 0.566 3.434 15 O -0.546 6.546 16 N -0.732 5.732 17 C 0.134 3.866 18 C 0.060 3.940 19 H 0.080 0.920 20 C 0.084 3.916 21 N -0.719 5.719 22 C 0.491 3.509 23 O -0.547 6.547 24 C 0.047 3.953 25 O -0.358 6.358 26 C -0.092 4.092 27 H 0.284 0.716 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.403 0.597 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.404 0.596 37 H 0.094 0.906 38 H 0.134 0.866 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.032 -9.827 -6.217 14.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.237 4.237 13 C -0.131 4.131 14 C 0.357 3.643 15 O -0.424 6.424 16 N -0.387 5.387 17 C 0.009 3.991 18 C 0.001 3.999 19 H 0.098 0.902 20 C -0.041 4.041 21 N -0.373 5.373 22 C 0.277 3.723 23 O -0.425 6.425 24 C -0.032 4.032 25 O -0.276 6.276 26 C -0.112 4.112 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.239 0.761 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.240 0.760 37 H 0.112 0.888 38 H 0.152 0.848 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.337 -9.322 -6.702 14.799 hybrid contribution -0.217 0.144 0.175 0.313 sum -9.554 -9.178 -6.527 14.768 Atomic orbital electron populations 1.69791 1.07565 1.29759 1.33676 1.25967 0.94783 1.01557 0.92291 0.86264 0.80368 0.80402 0.79454 1.19134 1.20235 1.18583 1.19603 0.98199 0.91024 1.40033 0.90056 1.17604 0.91231 0.92461 0.89142 1.21108 1.03418 0.92774 1.05799 1.20435 0.96019 0.96733 0.98431 1.20338 1.01256 0.94597 1.07484 1.19436 0.96439 0.95339 1.01899 1.18839 0.83318 0.82637 0.79517 1.90700 1.66298 1.29926 1.55505 1.45769 1.30495 1.10117 1.52331 1.21138 0.89517 0.92176 0.96261 1.22786 0.87672 0.93972 0.95444 0.90191 1.22071 0.98512 0.83692 0.99831 1.45565 1.16530 1.09755 1.65402 1.21101 0.88550 0.84065 0.78562 1.90792 1.78757 1.25251 1.47678 1.22855 0.93068 0.84181 1.03128 1.88330 1.42274 1.17552 1.79467 1.21638 0.96431 0.96447 0.96711 0.90450 0.88618 0.88897 0.89218 0.76136 0.90447 0.89687 0.88792 0.89816 0.75998 0.88811 0.84813 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.40 10.96 55.55 0.61 -19.79 16 2 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 7 C -0.46 -11.91 9.05 -37.73 -0.34 -12.25 16 8 H 0.08 2.00 7.91 -52.48 -0.41 1.59 16 9 C 0.10 2.55 5.57 -106.87 -0.60 1.96 16 10 C -0.21 -4.92 9.78 -38.81 -0.38 -5.30 16 11 C -0.10 -2.04 10.01 -39.72 -0.40 -2.44 16 12 C -0.22 -4.41 9.55 -38.92 -0.37 -4.79 16 13 C -0.13 -2.93 5.87 -105.04 -0.62 -3.55 16 14 C 0.57 11.79 7.77 -12.31 -0.10 11.69 16 15 O -0.55 -13.05 16.33 5.32 0.09 -12.97 16 16 N -0.73 -11.12 5.41 -61.24 -0.33 -11.45 16 17 C 0.13 1.54 5.35 -4.04 -0.02 1.52 16 18 C 0.06 0.50 2.76 -26.72 -0.07 0.43 16 19 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 20 C 0.08 0.53 6.75 -4.26 -0.03 0.50 16 21 N -0.72 -5.45 5.54 -60.92 -0.34 -5.79 16 22 C 0.49 4.93 7.84 -11.56 -0.09 4.84 16 23 O -0.55 -7.50 17.84 5.56 0.10 -7.40 16 24 C 0.05 0.39 6.98 35.84 0.25 0.64 16 25 O -0.36 -3.56 10.29 -35.23 -0.36 -3.92 16 26 C -0.09 -2.41 8.24 -38.44 -0.32 -2.72 16 27 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 28 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 29 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 30 H 0.09 1.50 6.38 -52.49 -0.33 1.16 16 31 H 0.40 5.43 6.39 -40.82 -0.26 5.17 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 36 H 0.40 2.55 8.86 -40.82 -0.36 2.19 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.13 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.13 3.78 5.74 -52.49 -0.30 3.48 16 LS Contribution 334.55 15.07 5.04 5.04 Total: -1.00 -32.50 334.55 -8.00 -40.50 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -4.61 Total: 10.01 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -3.17 Total: -7.74 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: -0.06 Total: -37.03 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.18 Total: -24.29 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.50 -8.00 -40.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.221 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds