Wall clock time and date at job start Fri Apr 10 2020 17:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86792 * 120.00038 * 2 1 4 4 H 1.48499 * 109.47066 * 269.99965 * 3 2 1 5 5 H 1.48498 * 109.47239 * 29.99650 * 3 2 1 6 6 H 1.48497 * 109.47337 * 149.99942 * 3 2 1 7 7 C 1.39938 * 119.99610 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99428 * 197.73520 * 7 2 1 9 9 C 1.41437 * 120.00484 * 17.73004 * 7 2 1 10 10 C 1.40781 * 120.17984 * 204.35691 * 9 7 2 11 11 C 1.37712 * 120.04152 * 180.02562 * 10 9 7 12 12 C 1.38371 * 120.41172 * 359.95436 * 11 10 9 13 13 C 1.39880 * 120.35562 * 0.02767 * 12 11 10 14 14 C 1.47891 * 120.02138 * 180.02562 * 13 12 11 15 15 O 1.21548 * 119.99549 * 179.97438 * 14 13 12 16 16 N 1.34771 * 120.00388 * 359.97438 * 14 13 12 17 17 C 1.46494 * 120.00400 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47556 * 180.02562 * 17 16 14 19 19 H 1.09000 * 109.73325 * 59.58425 * 18 17 16 20 20 C 1.53017 * 109.60708 * 179.97438 * 18 17 16 21 21 N 1.46088 * 109.92471 * 168.91866 * 20 18 17 22 22 C 1.33868 * 122.54190 * 341.63725 * 21 20 18 23 23 O 1.21283 * 118.83609 * 181.88631 * 22 21 20 24 24 C 1.50352 * 122.33154 * 1.90836 * 22 21 20 25 25 O 1.42981 * 109.80402 * 344.06127 * 24 22 21 26 26 C 1.39029 * 119.95307 * 0.26455 * 13 12 11 27 27 H 0.97000 * 120.00179 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.98062 * 0.02647 * 10 9 7 29 29 H 1.07995 * 119.79421 * 179.97438 * 11 10 9 30 30 H 1.07997 * 119.81940 * 179.97438 * 12 11 10 31 31 H 0.97007 * 119.99944 * 0.02562 * 16 14 13 32 32 H 1.09000 * 109.47385 * 59.99607 * 17 16 14 33 33 H 1.09004 * 109.47101 * 299.99785 * 17 16 14 34 34 H 1.08997 * 109.39377 * 289.05704 * 20 18 17 35 35 H 1.09002 * 109.39629 * 48.86673 * 20 18 17 36 36 H 0.96999 * 118.72929 * 161.66742 * 21 20 18 37 37 H 1.08998 * 109.41620 * 104.18050 * 24 22 21 38 38 H 1.09000 * 109.41125 * 224.04165 * 24 22 21 39 39 H 1.07999 * 120.20774 * 179.70160 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4397 2.6526 0.6999 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2119 0.0005 8 1 3.0495 -1.2340 0.2855 9 6 1.3512 -2.4079 -0.3719 10 6 1.8275 -3.6500 0.0889 11 6 1.1861 -4.8127 -0.2760 12 6 0.0715 -4.7706 -1.0948 13 6 -0.4164 -3.5457 -1.5621 14 6 -1.6086 -3.5092 -2.4365 15 8 -2.0325 -2.4446 -2.8419 16 7 -2.2250 -4.6563 -2.7838 17 6 -3.4056 -4.6202 -3.6504 18 6 -3.9077 -6.0458 -3.8882 19 1 -4.1656 -6.5088 -2.9357 20 6 -5.1414 -6.0115 -4.7927 21 7 -5.4699 -7.3635 -5.2381 22 6 -4.5911 -8.3720 -5.1866 23 8 -4.9241 -9.4601 -5.6065 24 6 -3.2060 -8.2039 -4.6264 25 8 -2.8859 -6.8134 -4.5352 26 6 0.2231 -2.3631 -1.2080 27 1 -0.4850 0.8400 -0.0004 28 1 2.6964 -3.6910 0.7290 29 1 1.5552 -5.7634 0.0795 30 1 -0.4238 -5.6883 -1.3753 31 1 -1.8869 -5.5059 -2.4600 32 1 -3.1422 -4.1635 -4.6044 33 1 -4.1901 -4.0343 -3.1714 34 1 -5.9845 -5.5978 -4.2393 35 1 -4.9363 -5.3855 -5.6611 36 1 -6.3590 -7.5370 -5.5849 37 1 -3.1596 -8.6525 -3.6341 38 1 -2.4880 -8.6977 -5.2812 39 1 -0.1473 -1.4156 -1.5704 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188687052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:36 Heat of formation + Delta-G solvation = -121.837465 kcal Electronic energy + Delta-G solvation = -23878.179850 eV Core-core repulsion = 20170.255475 eV Total energy + Delta-G solvation = -3707.924376 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.66559 -40.79177 -39.11666 -38.65626 -35.93590 -35.79180 -35.48169 -32.60237 -31.40553 -31.17937 -28.56181 -27.36472 -26.72473 -24.32385 -23.31444 -22.70676 -21.38867 -20.61375 -19.48357 -18.76743 -18.58450 -17.86249 -17.22358 -16.97902 -16.64266 -16.50179 -16.28477 -15.84105 -15.59616 -15.55188 -15.13055 -14.95365 -14.50555 -14.34132 -14.22409 -13.90560 -13.66074 -13.41291 -12.93697 -12.79794 -12.75134 -12.50621 -12.43907 -12.16021 -11.86647 -11.62745 -11.47353 -11.06185 -10.80304 -10.57189 -10.24705 -10.12072 -9.43858 -9.35361 -8.64664 -6.35827 0.41430 1.03543 1.36325 1.37999 1.49805 1.51850 1.93830 2.13525 2.20981 2.29327 2.50681 2.81290 3.31717 3.65043 3.72705 3.73479 3.91301 4.10728 4.21237 4.42440 4.45413 4.49332 4.57110 4.62844 4.66618 4.84216 4.94792 5.11626 5.22449 5.34152 5.41846 5.53904 5.55783 5.85093 5.89504 5.95670 6.08229 6.09396 6.31596 6.53317 6.70837 6.90506 6.97153 6.98219 7.33859 8.32192 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.029720 B = 0.002831 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.887655 B = 9889.762639 C =10660.611553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.030 3.970 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.252 1.252 7 C -0.498 4.498 8 H 0.082 0.918 9 C 0.066 3.934 10 C -0.218 4.218 11 C -0.097 4.097 12 C -0.195 4.195 13 C -0.139 4.139 14 C 0.563 3.437 15 O -0.587 6.587 16 N -0.709 5.709 17 C 0.130 3.870 18 C 0.065 3.935 19 H 0.099 0.901 20 C 0.086 3.914 21 N -0.710 5.710 22 C 0.487 3.513 23 O -0.592 6.592 24 C 0.050 3.950 25 O -0.376 6.376 26 C -0.131 4.131 27 H 0.287 0.713 28 H 0.106 0.894 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.414 0.586 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.088 0.912 36 H 0.410 0.590 37 H 0.115 0.885 38 H 0.141 0.859 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.488 -11.757 -6.097 16.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.185 4.185 3 Si 0.802 3.198 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.175 1.175 7 C -0.528 4.528 8 H 0.100 0.900 9 C 0.064 3.936 10 C -0.238 4.238 11 C -0.115 4.115 12 C -0.215 4.215 13 C -0.142 4.142 14 C 0.352 3.648 15 O -0.469 6.469 16 N -0.362 5.362 17 C 0.006 3.994 18 C 0.007 3.993 19 H 0.117 0.883 20 C -0.038 4.038 21 N -0.362 5.362 22 C 0.274 3.726 23 O -0.473 6.473 24 C -0.029 4.029 25 O -0.295 6.295 26 C -0.152 4.152 27 H 0.097 0.903 28 H 0.125 0.875 29 H 0.155 0.845 30 H 0.155 0.845 31 H 0.252 0.748 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.142 0.858 35 H 0.106 0.894 36 H 0.248 0.752 37 H 0.133 0.867 38 H 0.158 0.842 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.813 -11.288 -6.579 16.340 hybrid contribution -0.141 0.538 0.093 0.564 sum -9.954 -10.751 -6.486 16.023 Atomic orbital electron populations 1.69884 1.09130 1.30573 1.35373 1.26824 0.95439 1.04842 0.91389 0.85204 0.79250 0.75941 0.79357 1.19139 1.19363 1.17548 1.19861 0.98504 0.92257 1.42146 0.89974 1.17950 0.91918 0.93855 0.89909 1.21409 1.03841 0.92874 1.05656 1.20924 0.95440 0.97628 0.97476 1.20857 1.00365 0.95178 1.05059 1.19790 0.97049 0.95418 1.01978 1.18636 0.83167 0.83538 0.79432 1.90679 1.67329 1.31779 1.57072 1.45552 1.30609 1.08708 1.51345 1.21352 0.88206 0.94730 0.95112 1.22742 0.87855 0.91850 0.96831 0.88290 1.22161 0.98690 0.82949 1.00045 1.45554 1.16531 1.09782 1.64327 1.21421 0.89332 0.83764 0.78080 1.90776 1.79648 1.27016 1.49888 1.22939 0.92164 0.83491 1.04330 1.88305 1.42968 1.18395 1.79804 1.21446 0.98212 0.96531 0.98971 0.90289 0.87543 0.84451 0.84500 0.74808 0.91317 0.88620 0.85771 0.89427 0.75216 0.86738 0.84161 0.88250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.31 10.96 21.83 0.24 -45.07 16 2 C 0.03 1.56 5.14 85.25 0.44 1.99 16 3 Si 0.98 39.30 29.59 68.60 2.03 41.33 16 4 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 6 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 7 C -0.50 -26.95 9.05 23.47 0.21 -26.74 16 8 H 0.08 4.21 7.91 -2.91 -0.02 4.19 16 9 C 0.07 3.54 5.57 -21.32 -0.12 3.42 16 10 C -0.22 -10.04 9.78 22.77 0.22 -9.82 16 11 C -0.10 -3.73 10.01 22.18 0.22 -3.50 16 12 C -0.19 -7.34 9.55 22.70 0.22 -7.12 16 13 C -0.14 -6.35 5.87 -20.13 -0.12 -6.47 16 14 C 0.56 23.19 7.77 86.80 0.67 23.87 16 15 O -0.59 -28.78 16.33 -3.87 -0.06 -28.85 16 16 N -0.71 -19.79 5.41 -465.94 -2.52 -22.31 16 17 C 0.13 2.66 5.35 86.38 0.46 3.13 16 18 C 0.07 0.87 2.76 30.60 0.08 0.96 16 19 H 0.10 1.01 8.10 -2.39 -0.02 0.99 16 20 C 0.09 0.79 6.75 86.46 0.58 1.38 16 21 N -0.71 -8.89 5.54 -465.55 -2.58 -11.47 16 22 C 0.49 8.76 7.84 87.69 0.69 9.44 16 23 O -0.59 -15.61 17.84 -3.04 -0.05 -15.66 16 24 C 0.05 0.69 6.98 71.13 0.50 1.19 16 25 O -0.38 -6.29 10.29 -148.98 -1.53 -7.82 16 26 C -0.13 -7.14 8.24 23.01 0.19 -6.95 16 27 H 0.29 14.48 8.30 -92.71 -0.77 13.71 16 28 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 29 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 30 H 0.14 3.81 6.38 -2.91 -0.02 3.79 16 31 H 0.41 9.53 6.39 -92.70 -0.59 8.94 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.09 0.81 8.10 -2.39 -0.02 0.79 16 36 H 0.41 4.23 8.86 -92.71 -0.82 3.41 16 37 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.10 6.04 5.74 -2.91 -0.02 6.02 16 Total: -1.00 -75.67 334.55 -0.53 -76.20 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: -0.30 Total: 28.88 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 4.25 Total: -15.22 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -4.86 Total: -78.85 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -1.65 Total: -52.33 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -75.67 -0.53 -76.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.638 kcal (2) G-P(sol) polarization free energy of solvation -75.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds