Wall clock time and date at job start Fri Apr 10 2020 17:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00194 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00241 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 H 1.09002 * 110.28949 * 32.86811 * 14 13 11 16 16 C 1.54379 * 110.32150 * 270.63602 * 14 13 11 17 17 N 1.48564 * 104.59414 * 217.24850 * 16 14 13 18 18 C 1.46900 * 111.00199 * 159.04166 * 17 16 14 19 19 C 1.52996 * 109.47113 * 174.71150 * 18 17 16 20 20 C 1.53001 * 109.47203 * 179.97438 * 19 18 17 21 21 O 1.42894 * 109.47230 * 179.97438 * 20 19 18 22 22 C 1.48555 * 104.21936 * 39.48179 * 17 16 14 23 23 C 1.54260 * 110.32595 * 154.99492 * 14 13 11 24 24 H 1.09003 * 110.32199 * 0.02562 * 23 14 13 25 25 O 1.42900 * 110.32585 * 237.89455 * 23 14 13 26 26 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 28 28 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 29 29 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 30 30 H 1.08993 * 110.41240 * 336.02733 * 16 14 13 31 31 H 1.08998 * 110.41295 * 98.47461 * 16 14 13 32 32 H 1.09001 * 109.46538 * 294.70613 * 18 17 16 33 33 H 1.08997 * 109.47204 * 54.70748 * 18 17 16 34 34 H 1.09005 * 109.46939 * 299.99718 * 19 18 17 35 35 H 1.08997 * 109.47413 * 59.99727 * 19 18 17 36 36 H 1.09005 * 109.47055 * 299.99784 * 20 19 18 37 37 H 1.08998 * 109.46835 * 59.99139 * 20 19 18 38 38 H 0.96706 * 113.99781 * 179.97438 * 21 20 19 39 39 H 1.09006 * 110.41511 * 201.73650 * 22 17 16 40 40 H 1.09006 * 110.41392 * 79.29700 * 22 17 16 41 41 H 0.96696 * 113.99952 * 180.02562 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 1 1.3937 -7.7651 -0.5892 16 6 2.1265 -8.2188 1.4113 17 7 2.5199 -9.6508 1.3675 18 6 2.8586 -10.1450 2.7087 19 6 3.1297 -11.6494 2.6445 20 6 3.4831 -12.1641 4.0413 21 8 3.7357 -13.5692 3.9814 22 6 3.7075 -9.6757 0.4753 23 6 3.3703 -8.6735 -0.6495 24 1 4.2633 -8.1232 -0.9460 25 8 2.8119 -9.3557 -1.7741 26 1 -0.4849 0.8401 0.0004 27 1 3.1244 -3.7267 -0.9039 28 1 3.1244 -3.7361 0.8761 29 1 3.8007 -6.1835 -0.0260 30 1 2.7684 -7.6692 2.0996 31 1 1.0812 -8.1207 1.7043 32 1 3.7485 -9.6306 3.0714 33 1 2.0269 -9.9543 3.3869 34 1 2.2398 -12.1638 2.2817 35 1 3.9614 -11.8401 1.9663 36 1 4.3731 -11.6496 4.4037 37 1 2.6516 -11.9733 4.7198 38 1 3.9668 -13.9639 4.8335 39 1 3.8527 -10.6745 0.0635 40 1 4.5969 -9.3540 1.0171 41 1 3.4211 -9.9728 -2.2020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191149535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:42 Heat of formation + Delta-G solvation = -130.386409 kcal Electronic energy + Delta-G solvation = -22277.091570 eV Core-core repulsion = 18704.240436 eV Total energy + Delta-G solvation = -3572.851134 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.25256 -38.64287 -37.52331 -36.23279 -34.56526 -32.58400 -32.44090 -30.02316 -28.89571 -27.74605 -25.51613 -24.98532 -22.39073 -21.46538 -20.90270 -20.43223 -17.94686 -17.84053 -17.40679 -16.68859 -16.50070 -16.09096 -15.47298 -15.23396 -15.04285 -14.81766 -14.37603 -14.24448 -13.94898 -13.60492 -13.33338 -13.12327 -12.76321 -12.69896 -12.55004 -12.32397 -11.95464 -11.59192 -11.52088 -11.25238 -11.08429 -11.04000 -10.95816 -10.77293 -10.40677 -10.34104 -9.82427 -9.46512 -9.10676 -9.04761 -8.81945 -8.24981 -6.51662 -6.23248 -3.93876 2.87687 3.02084 3.20354 3.23789 3.29472 3.42617 3.62798 3.94536 3.99176 4.18578 4.35535 4.36323 4.54734 4.71993 4.80485 4.86090 4.96019 5.03550 5.10446 5.11981 5.13021 5.17502 5.26098 5.29820 5.44608 5.59696 5.69434 5.73847 5.83238 5.85482 5.97340 6.10131 6.30534 6.61600 6.63282 7.17087 7.39188 7.58091 7.61308 8.33795 8.55199 9.22150 10.84198 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.027463 B = 0.002385 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.299017 B =11738.772010 C =12194.155680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.534 3.466 12 O -0.510 6.510 13 N -0.733 5.733 14 C 0.149 3.851 15 H 0.114 0.886 16 C 0.025 3.975 17 N -0.501 5.501 18 C 0.046 3.954 19 C -0.115 4.115 20 C 0.076 3.924 21 O -0.575 6.575 22 C 0.001 3.999 23 C 0.096 3.904 24 H 0.069 0.931 25 O -0.549 6.549 26 H 0.268 0.732 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.397 0.603 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.044 0.956 37 H 0.048 0.952 38 H 0.380 0.620 39 H 0.090 0.910 40 H 0.053 0.947 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.475 -23.164 5.325 26.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.383 6.383 13 N -0.388 5.388 14 C 0.043 3.957 15 H 0.132 0.868 16 C -0.104 4.104 17 N -0.225 5.225 18 C -0.082 4.082 19 C -0.153 4.153 20 C -0.002 4.002 21 O -0.381 6.381 22 C -0.128 4.128 23 C 0.036 3.964 24 H 0.087 0.913 25 O -0.354 6.354 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.231 0.769 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.227 0.773 39 H 0.108 0.892 40 H 0.071 0.929 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 9.193 -23.260 4.652 25.440 hybrid contribution 3.808 1.464 0.911 4.180 sum 13.001 -21.797 5.563 25.982 Atomic orbital electron populations 1.70031 1.05942 1.27367 1.46862 1.25005 0.95042 0.99058 0.94547 0.86108 0.79545 0.81867 0.77913 1.19646 1.20548 1.20569 1.22905 0.94930 0.91637 1.58909 0.90879 1.85434 1.04763 0.96302 1.96705 1.23532 1.06680 0.95209 1.04954 1.20349 0.86559 0.86195 0.74842 1.90719 1.15266 1.85437 1.46900 1.46052 1.09834 1.04829 1.78123 1.21411 0.98844 0.80374 0.95111 0.86775 1.23575 1.02873 0.87375 0.96543 1.65354 1.29845 1.17803 1.09516 1.22181 1.00294 0.94765 0.90973 1.21435 1.03140 0.94695 0.96022 1.22131 0.99013 0.81414 0.97659 1.86473 1.92601 1.22354 1.36638 1.23913 0.92669 1.00764 0.95418 1.22712 0.95347 0.92224 0.86148 0.91275 1.86611 1.43613 1.60387 1.44775 0.92212 0.89140 0.89210 0.76891 0.92861 0.88623 0.94342 0.90127 0.90137 0.91376 0.93793 0.93417 0.77319 0.89218 0.92885 0.77412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.15 -3.03 6.16 36.00 0.22 -2.81 16 11 C 0.53 9.84 7.85 -10.99 -0.09 9.76 16 12 O -0.51 -11.55 15.51 5.56 0.09 -11.46 16 13 N -0.73 -9.65 5.06 -52.47 -0.27 -9.92 16 14 C 0.15 1.89 3.22 -66.55 -0.21 1.67 16 15 H 0.11 1.85 7.40 -51.93 -0.38 1.46 16 16 C 0.03 0.29 6.20 -2.18 -0.01 0.28 16 17 N -0.50 -5.02 5.37 -229.97 -1.24 -6.26 16 18 C 0.05 0.38 4.81 -3.83 -0.02 0.36 16 19 C -0.12 -0.90 5.64 -26.73 -0.15 -1.05 16 20 C 0.08 0.50 7.05 37.16 0.26 0.76 16 21 O -0.58 -4.30 13.66 -35.23 -0.48 -4.78 16 22 C 0.00 0.01 5.48 -2.18 -0.01 0.00 16 23 C 0.10 0.90 4.18 -25.35 -0.11 0.80 16 24 H 0.07 0.52 7.67 -51.93 -0.40 0.13 16 25 O -0.55 -5.65 13.27 -35.23 -0.47 -6.11 16 26 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 27 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 28 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 29 H 0.40 3.92 8.36 -40.82 -0.34 3.58 16 30 H 0.05 0.59 7.91 -51.93 -0.41 0.18 16 31 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.04 0.28 7.88 -51.93 -0.41 -0.12 16 33 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.54 7.25 -51.93 -0.38 0.17 16 36 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.38 1.07 9.12 45.56 0.42 1.49 16 39 H 0.09 0.65 7.70 -51.93 -0.40 0.25 16 40 H 0.05 0.37 7.82 -51.93 -0.41 -0.04 16 41 H 0.38 2.03 9.12 45.56 0.42 2.44 16 LS Contribution 356.44 15.07 5.37 5.37 Total: -1.00 -36.93 356.44 -8.21 -45.14 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.80 Total: 4.02 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 0.08 Total: -3.14 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: -0.77 Total: -41.54 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.86 Total: -22.36 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.93 -8.21 -45.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191149535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.241 kcal (2) G-P(sol) polarization free energy of solvation -36.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds