Wall clock time and date at job start Fri Apr 10 2020 17:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00194 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00241 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 H 1.09002 * 110.28949 * 32.86811 * 14 13 11 16 16 C 1.54379 * 110.32150 * 270.63602 * 14 13 11 17 17 N 1.48564 * 104.59414 * 217.24850 * 16 14 13 18 18 C 1.46900 * 111.00199 * 159.04166 * 17 16 14 19 19 C 1.52996 * 109.47113 * 174.71150 * 18 17 16 20 20 C 1.53001 * 109.47203 * 179.97438 * 19 18 17 21 21 O 1.42894 * 109.47230 * 179.97438 * 20 19 18 22 22 C 1.48555 * 104.21936 * 39.48179 * 17 16 14 23 23 C 1.54260 * 110.32595 * 154.99492 * 14 13 11 24 24 H 1.09003 * 110.32199 * 0.02562 * 23 14 13 25 25 O 1.42900 * 110.32585 * 237.89455 * 23 14 13 26 26 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 28 28 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 29 29 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 30 30 H 1.08993 * 110.41240 * 336.02733 * 16 14 13 31 31 H 1.08998 * 110.41295 * 98.47461 * 16 14 13 32 32 H 1.09001 * 109.46538 * 294.70613 * 18 17 16 33 33 H 1.08997 * 109.47204 * 54.70748 * 18 17 16 34 34 H 1.09005 * 109.46939 * 299.99718 * 19 18 17 35 35 H 1.08997 * 109.47413 * 59.99727 * 19 18 17 36 36 H 1.09005 * 109.47055 * 299.99784 * 20 19 18 37 37 H 1.08998 * 109.46835 * 59.99139 * 20 19 18 38 38 H 0.96706 * 113.99781 * 179.97438 * 21 20 19 39 39 H 1.09006 * 110.41511 * 201.73650 * 22 17 16 40 40 H 1.09006 * 110.41392 * 79.29700 * 22 17 16 41 41 H 0.96696 * 113.99952 * 180.02562 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 1 1.3937 -7.7651 -0.5892 16 6 2.1265 -8.2188 1.4113 17 7 2.5199 -9.6508 1.3675 18 6 2.8586 -10.1450 2.7087 19 6 3.1297 -11.6494 2.6445 20 6 3.4831 -12.1641 4.0413 21 8 3.7357 -13.5692 3.9814 22 6 3.7075 -9.6757 0.4753 23 6 3.3703 -8.6735 -0.6495 24 1 4.2633 -8.1232 -0.9460 25 8 2.8119 -9.3557 -1.7741 26 1 -0.4849 0.8401 0.0004 27 1 3.1244 -3.7267 -0.9039 28 1 3.1244 -3.7361 0.8761 29 1 3.8007 -6.1835 -0.0260 30 1 2.7684 -7.6692 2.0996 31 1 1.0812 -8.1207 1.7043 32 1 3.7485 -9.6306 3.0714 33 1 2.0269 -9.9543 3.3869 34 1 2.2398 -12.1638 2.2817 35 1 3.9614 -11.8401 1.9663 36 1 4.3731 -11.6496 4.4037 37 1 2.6516 -11.9733 4.7198 38 1 3.9668 -13.9639 4.8335 39 1 3.8527 -10.6745 0.0635 40 1 4.5969 -9.3540 1.0171 41 1 3.4211 -9.9728 -2.2020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191149535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:42 Heat of formation + Delta-G solvation = -165.089538 kcal Electronic energy + Delta-G solvation = -22278.596411 eV Core-core repulsion = 18704.240436 eV Total energy + Delta-G solvation = -3574.355975 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.29097 -39.85079 -38.09299 -36.94401 -35.71887 -34.58427 -33.42948 -31.32178 -29.68848 -28.83318 -27.64244 -25.70607 -23.06024 -22.40198 -21.91741 -21.48151 -19.87166 -18.51100 -18.29361 -17.79088 -17.43390 -16.92738 -16.88135 -16.56827 -16.39865 -16.10772 -15.56817 -15.25548 -14.93092 -14.73171 -14.48628 -14.28706 -13.88055 -13.77262 -13.52889 -13.25811 -13.16141 -13.02885 -12.91194 -12.58948 -12.44819 -12.08747 -11.87124 -11.84587 -11.69982 -11.16053 -11.15376 -10.92250 -10.87561 -10.28221 -10.26991 -9.55496 -8.67151 -8.34859 -6.12995 1.24965 1.41641 1.45808 1.55601 1.57235 2.08726 2.27033 2.80569 2.99459 3.16938 3.30740 3.37733 3.60809 3.63960 3.91280 3.97878 4.01538 4.14417 4.24652 4.29850 4.33265 4.40363 4.45909 4.49904 4.57268 4.60704 4.67270 4.73586 4.87066 4.89608 5.10446 5.21019 5.31879 5.42282 5.72125 5.93808 6.20066 6.42690 6.88937 6.90116 7.06560 7.19425 8.74580 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.027463 B = 0.002385 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.299017 B =11738.772010 C =12194.155680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.000 3.000 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.085 0.915 9 S -0.154 6.154 10 C -0.127 4.127 11 C 0.537 3.463 12 O -0.561 6.561 13 N -0.704 5.704 14 C 0.143 3.857 15 H 0.072 0.928 16 C 0.032 3.968 17 N -0.518 5.518 18 C 0.049 3.951 19 C -0.109 4.109 20 C 0.076 3.924 21 O -0.598 6.598 22 C 0.007 3.993 23 C 0.103 3.897 24 H 0.098 0.902 25 O -0.574 6.574 26 H 0.271 0.729 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.418 0.582 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.398 0.602 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.084 -23.646 5.766 29.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.194 4.194 3 Si 0.822 3.178 4 H -0.179 1.179 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.103 0.897 9 S 0.074 5.926 10 C -0.279 4.279 11 C 0.323 3.677 12 O -0.439 6.439 13 N -0.360 5.360 14 C 0.037 3.963 15 H 0.091 0.909 16 C -0.097 4.097 17 N -0.243 5.243 18 C -0.079 4.079 19 C -0.147 4.147 20 C -0.002 4.002 21 O -0.406 6.406 22 C -0.121 4.121 23 C 0.043 3.957 24 H 0.115 0.885 25 O -0.383 6.383 26 H 0.080 0.920 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.257 0.743 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.248 0.752 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 12.879 -23.803 5.101 27.540 hybrid contribution 2.714 1.434 0.764 3.163 sum 15.592 -22.369 5.865 27.891 Atomic orbital electron populations 1.70199 1.08009 1.28532 1.48089 1.26158 0.95983 1.03410 0.93801 0.84884 0.78644 0.76263 0.78016 1.17887 1.20052 1.19971 1.23238 0.95384 0.91875 1.58691 0.89736 1.85655 1.10588 0.99349 1.97052 1.23357 1.03578 0.93856 1.07072 1.20142 0.86223 0.86693 0.74663 1.90712 1.17528 1.85993 1.49631 1.45697 1.10307 1.04071 1.75876 1.21440 0.98481 0.80455 0.95934 0.90928 1.23362 1.01688 0.88862 0.95793 1.65320 1.31598 1.16369 1.10983 1.22183 1.00755 0.95033 0.89957 1.21358 1.02210 0.94180 0.96990 1.22135 0.99964 0.81238 0.96828 1.86417 1.92762 1.22892 1.38565 1.23961 0.92505 1.01112 0.94560 1.22680 0.94547 0.91993 0.86449 0.88479 1.86561 1.45288 1.61230 1.45251 0.92024 0.87008 0.86774 0.74346 0.91827 0.91286 0.92801 0.90581 0.92120 0.91280 0.92215 0.92843 0.75163 0.88037 0.90636 0.74896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.08 13.22 21.65 0.29 -55.79 16 2 C 0.01 0.63 5.49 84.86 0.47 1.09 16 3 Si 1.00 43.35 29.55 68.60 2.03 45.37 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.54 -30.81 9.50 67.96 0.65 -30.17 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.50 20.57 -56.49 -1.16 -9.67 16 10 C -0.13 -4.92 6.16 71.23 0.44 -4.48 16 11 C 0.54 19.65 7.85 87.66 0.69 20.34 16 12 O -0.56 -26.44 15.51 -3.02 -0.05 -26.49 16 13 N -0.70 -17.41 5.06 -438.30 -2.22 -19.63 16 14 C 0.14 3.54 3.22 45.89 0.15 3.69 16 15 H 0.07 2.46 7.40 -2.39 -0.02 2.44 16 16 C 0.03 0.73 6.20 86.45 0.54 1.27 16 17 N -0.52 -9.69 5.37 -881.50 -4.73 -14.42 16 18 C 0.05 0.71 4.81 86.30 0.42 1.12 16 19 C -0.11 -1.53 5.64 30.59 0.17 -1.36 16 20 C 0.08 0.85 7.05 71.98 0.51 1.36 16 21 O -0.60 -7.94 13.66 -148.98 -2.03 -9.97 16 22 C 0.01 0.09 5.48 86.45 0.47 0.56 16 23 C 0.10 1.69 4.18 31.49 0.13 1.82 16 24 H 0.10 1.06 7.67 -2.39 -0.02 1.04 16 25 O -0.57 -10.88 13.27 -148.98 -1.98 -12.86 16 26 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 27 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 28 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 29 H 0.42 6.82 8.36 -92.71 -0.77 6.04 16 30 H 0.06 1.29 7.91 -2.39 -0.02 1.27 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 0.63 7.88 -2.39 -0.02 0.61 16 33 H 0.08 1.16 8.13 -2.39 -0.02 1.14 16 34 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.07 0.95 7.25 -2.39 -0.02 0.93 16 36 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 37 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.40 1.56 9.12 -74.05 -0.68 0.88 16 39 H 0.10 1.15 7.70 -2.38 -0.02 1.13 16 40 H 0.08 0.70 7.82 -2.38 -0.02 0.69 16 41 H 0.40 3.34 9.12 -74.06 -0.68 2.66 16 Total: -1.00 -83.70 356.44 -6.30 -90.00 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -1.06 Total: 18.20 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 4.62 Total: -4.75 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -6.67 Total: -89.84 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -4.06 Total: -49.32 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.67 kcal Total: -83.70 -6.30 -90.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191149535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.087 kcal (2) G-P(sol) polarization free energy of solvation -83.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds