Wall clock time and date at job start Fri Apr 10 2020 17:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99746 * 2 1 4 4 H 1.48504 * 109.47123 * 269.99375 * 3 2 1 5 5 H 1.48500 * 109.47637 * 29.99730 * 3 2 1 6 6 H 1.48500 * 109.47076 * 150.00022 * 3 2 1 7 7 C 1.37872 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00241 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00192 * 0.02562 * 7 2 1 10 10 O 1.42106 * 106.39974 * 66.46030 * 9 7 2 11 11 O 1.42095 * 106.40200 * 293.54353 * 9 7 2 12 12 N 1.65598 * 107.22056 * 179.97438 * 9 7 2 13 13 C 1.47075 * 120.88368 * 269.72056 * 12 9 7 14 14 C 1.53247 * 108.52229 * 129.08587 * 13 12 9 15 15 N 1.46897 * 109.33503 * 53.83233 * 14 13 12 16 16 C 1.46901 * 110.99727 * 172.74667 * 15 14 13 17 17 C 1.53000 * 109.47028 * 50.57169 * 16 15 14 18 18 H 1.09000 * 110.33243 * 308.07149 * 17 16 15 19 19 C 1.54486 * 110.37215 * 185.81936 * 17 16 15 20 20 C 1.54506 * 104.06395 * 217.19142 * 19 17 16 21 21 C 1.54477 * 104.06430 * 0.02562 * 20 19 17 22 22 O 1.44425 * 110.37271 * 70.32403 * 17 16 15 23 23 C 1.46896 * 111.26965 * 296.89436 * 15 14 13 24 24 C 1.47079 * 120.88149 * 90.00270 * 12 9 7 25 25 H 0.96996 * 119.99709 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.63557 * 248.79779 * 13 12 9 27 27 H 1.09002 * 109.62790 * 9.38049 * 13 12 9 28 28 H 1.08997 * 109.49297 * 293.87048 * 14 13 12 29 29 H 1.08997 * 109.49325 * 173.79229 * 14 13 12 30 30 H 1.09003 * 109.47204 * 170.56911 * 16 15 14 31 31 H 1.08998 * 109.47190 * 290.57122 * 16 15 14 32 32 H 1.09002 * 110.50973 * 335.83644 * 19 17 16 33 33 H 1.09000 * 110.50990 * 98.54642 * 19 17 16 34 34 H 1.08998 * 110.51234 * 118.64589 * 20 19 17 35 35 H 1.09005 * 110.51129 * 241.35665 * 20 19 17 36 36 H 1.09000 * 110.37517 * 142.80965 * 21 20 19 37 37 H 1.09000 * 110.37552 * 265.03790 * 21 20 19 38 38 H 1.09005 * 109.49275 * 303.14479 * 23 15 14 39 39 H 1.09007 * 109.51419 * 183.08418 * 23 15 14 40 40 H 1.09009 * 109.62585 * 350.62125 * 24 12 9 41 41 H 1.08995 * 109.63370 * 111.00816 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1236 -2.7200 0.0005 10 8 0.4520 -2.7955 -1.2495 11 8 0.4510 -2.7949 1.2499 12 7 2.2484 -3.9354 0.0005 13 6 2.7566 -4.4936 -1.2617 14 6 4.2883 -4.4879 -1.2147 15 7 4.7404 -5.1823 -0.0018 16 6 6.1998 -5.3498 -0.0040 17 6 6.8670 -4.0045 -0.2970 18 1 6.4455 -3.5611 -1.1991 19 6 8.3940 -4.1832 -0.4486 20 6 8.9871 -2.9140 0.2029 21 6 7.7485 -2.1188 0.6717 22 8 6.7076 -3.1093 0.8251 23 6 4.2925 -4.4838 1.2104 24 6 2.7611 -4.4895 1.2628 25 1 -0.4849 0.8400 -0.0004 26 1 2.3978 -5.5160 -1.3808 27 1 2.4136 -3.8826 -2.0967 28 1 4.6479 -3.4590 -1.2002 29 1 4.6811 -4.9984 -2.0940 30 1 6.5255 -5.7122 0.9710 31 1 6.4817 -6.0701 -0.7721 32 1 8.7284 -5.0758 0.0802 33 1 8.6696 -4.2363 -1.5018 34 1 9.6148 -3.1791 1.0537 35 1 9.5560 -2.3395 -0.5283 36 1 7.9503 -1.6286 1.6241 37 1 7.4631 -1.3830 -0.0801 38 1 4.6521 -3.4550 1.1912 39 1 4.6885 -4.9911 2.0903 40 1 2.4210 -3.8757 2.0970 41 1 2.3999 -5.5102 1.3882 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192957210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:47 Heat of formation + Delta-G solvation = -124.131286 kcal Electronic energy + Delta-G solvation = -24752.798327 eV Core-core repulsion = 21180.218435 eV Total energy + Delta-G solvation = -3572.579892 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.92185 -38.02693 -35.23108 -34.29596 -33.89017 -33.01399 -32.24691 -30.66390 -29.93776 -26.56915 -26.07468 -23.86674 -23.35115 -21.83965 -21.33157 -19.83822 -18.39660 -17.41315 -16.69617 -16.24905 -15.82566 -15.66189 -15.06956 -14.77208 -14.74755 -14.48698 -14.26624 -13.86724 -13.76051 -13.21466 -13.09025 -12.33375 -12.28131 -12.00720 -11.89780 -11.77624 -11.57890 -11.31694 -11.23598 -11.19915 -10.99192 -10.87161 -10.75442 -10.67016 -10.58744 -10.23538 -10.03642 -9.90393 -9.74855 -9.21435 -8.88383 -8.31489 -7.86601 -6.65410 -5.26544 2.33081 3.07354 3.14024 3.21037 3.73469 4.07861 4.18320 4.43301 4.56094 4.62766 4.67829 4.75568 4.93806 5.06744 5.24966 5.35289 5.37278 5.46049 5.51649 5.55852 5.64097 5.68379 5.74465 5.76863 5.84261 5.85830 5.92926 5.96613 6.06126 6.14560 6.24903 6.35731 6.51396 6.61874 6.78948 6.83837 7.29040 7.29816 7.37876 7.66220 8.03649 8.93612 10.28023 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.015017 B = 0.005930 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.093219 B = 4720.291267 C = 5994.740085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.133 3.867 3 Si 0.917 3.083 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.017 5.017 8 H 0.100 0.900 9 S 2.716 3.284 10 O -1.006 7.006 11 O -1.005 7.005 12 N -1.013 6.013 13 C 0.134 3.866 14 C 0.037 3.963 15 N -0.530 5.530 16 C 0.063 3.937 17 C 0.031 3.969 18 H 0.074 0.926 19 C -0.147 4.147 20 C -0.154 4.154 21 C 0.041 3.959 22 O -0.360 6.360 23 C 0.040 3.960 24 C 0.132 3.868 25 H 0.290 0.710 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.440 -7.553 -0.901 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.084 4.084 3 Si 0.741 3.259 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.150 5.150 8 H 0.119 0.881 9 S 2.817 3.183 10 O -0.996 6.996 11 O -0.995 6.995 12 N -0.849 5.849 13 C 0.007 3.993 14 C -0.092 4.092 15 N -0.253 5.253 16 C -0.066 4.066 17 C -0.028 4.028 18 H 0.092 0.908 19 C -0.185 4.185 20 C -0.192 4.192 21 C -0.036 4.036 22 O -0.279 6.279 23 C -0.089 4.089 24 C 0.005 3.995 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.897 -8.115 -0.718 17.863 hybrid contribution 1.714 2.144 -0.206 2.753 sum 17.611 -5.971 -0.924 18.618 Atomic orbital electron populations 1.69903 1.06738 1.30606 1.40421 1.24733 0.94413 1.00682 0.88576 0.86215 0.80265 0.80307 0.79073 1.19287 1.19970 1.18716 1.30631 1.06032 1.11902 1.66435 0.88143 1.00468 0.72136 0.72943 0.72745 1.93347 1.72858 1.87639 1.45752 1.93348 1.72781 1.87606 1.45755 1.58230 1.62289 1.54388 1.09957 1.21246 0.91935 0.99401 0.86733 1.22559 0.96833 0.97457 0.92391 1.62108 1.09708 1.50556 1.02951 1.22376 0.87492 0.93726 1.02979 1.23957 0.94984 0.93006 0.90860 0.90779 1.22931 0.95473 0.98669 1.01440 1.22918 0.98580 0.96731 1.00938 1.23420 0.86575 0.91926 1.01706 1.89262 1.52390 1.40485 1.45793 1.22603 0.95844 0.98741 0.91690 1.21290 0.92424 0.99243 0.86504 0.89966 0.91856 0.89075 0.93546 0.90554 0.90121 0.89529 0.90618 0.90753 0.90871 0.90817 0.89253 0.92374 0.91814 0.90729 0.89141 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.29 13.19 55.43 0.73 -24.56 16 2 C 0.13 3.79 5.46 -17.82 -0.10 3.69 16 3 Si 0.92 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 7 C -1.02 -28.51 9.74 30.60 0.30 -28.21 16 8 H 0.10 2.64 7.81 -52.48 -0.41 2.23 16 9 S 2.72 74.06 4.98 -107.50 -0.54 73.53 16 10 O -1.01 -29.81 16.79 -57.17 -0.96 -30.77 16 11 O -1.00 -29.98 16.80 -57.17 -0.96 -30.94 16 12 N -1.01 -21.51 3.33 -113.23 -0.38 -21.88 16 13 C 0.13 2.39 6.53 -3.60 -0.02 2.37 16 14 C 0.04 0.55 4.69 -3.70 -0.02 0.53 16 15 N -0.53 -7.55 4.83 -234.32 -1.13 -8.68 16 16 C 0.06 0.71 5.16 -3.82 -0.02 0.69 16 17 C 0.03 0.36 2.80 -25.95 -0.07 0.29 16 18 H 0.07 0.92 6.05 -51.93 -0.31 0.60 16 19 C -0.15 -1.27 6.63 -25.16 -0.17 -1.44 16 20 C -0.15 -1.32 7.09 -25.17 -0.18 -1.50 16 21 C 0.04 0.46 7.63 37.93 0.29 0.75 16 22 O -0.36 -5.05 8.81 -35.23 -0.31 -5.36 16 23 C 0.04 0.64 5.03 -3.70 -0.02 0.62 16 24 C 0.13 2.44 6.53 -3.60 -0.02 2.41 16 25 H 0.29 7.78 8.31 -40.82 -0.34 7.44 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.09 1.70 7.21 -51.93 -0.37 1.33 16 28 H 0.05 0.76 6.50 -51.93 -0.34 0.42 16 29 H 0.08 0.92 8.11 -51.93 -0.42 0.50 16 30 H 0.08 0.88 7.90 -51.93 -0.41 0.47 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.59 7.87 -51.93 -0.41 0.18 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 1.15 6.06 -51.93 -0.31 0.83 16 39 H 0.07 1.05 7.95 -51.93 -0.41 0.63 16 40 H 0.09 1.76 7.23 -51.92 -0.38 1.39 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 333.04 15.07 5.02 5.02 Total: -1.00 -35.41 333.04 -9.87 -45.29 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.30 Total: 2.25 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -0.03 Total: -19.81 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.78 Total: -55.12 kcal Atomic # 8 Polarization: -64.84 SS G_CDS: -2.23 Total: -67.07 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 74.06 SS G_CDS: -0.54 Total: 73.53 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.41 -9.87 -45.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192957210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.845 kcal (2) G-P(sol) polarization free energy of solvation -35.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds