Wall clock time and date at job start Fri Apr 10 2020 17:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 N 1.65600 * 107.21522 * 179.72073 * 9 7 2 13 13 C 1.47079 * 120.88229 * 269.71668 * 12 9 7 14 14 C 1.53700 * 108.27638 * 128.75778 * 13 12 9 15 15 N 1.46895 * 109.25815 * 54.08133 * 14 13 12 16 16 C 1.46897 * 110.99997 * 172.60486 * 15 14 13 17 17 C 1.53178 * 109.54273 * 59.12856 * 16 15 14 18 18 C 1.53102 * 109.16173 * 183.23802 * 17 16 15 19 19 O 1.42901 * 109.48479 * 57.47272 * 18 17 16 20 20 C 1.42905 * 114.10074 * 298.89722 * 19 18 17 21 21 C 1.53089 * 109.41757 * 61.15003 * 20 19 18 22 22 C 1.46898 * 111.27175 * 296.76166 * 15 14 13 23 23 C 1.47080 * 120.88374 * 89.99886 * 12 9 7 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.63392 * 248.52679 * 13 12 9 26 26 H 1.09007 * 109.62749 * 9.10794 * 13 12 9 27 27 H 1.09006 * 109.64136 * 294.07898 * 14 13 12 28 28 H 1.08997 * 109.42094 * 173.95240 * 14 13 12 29 29 H 1.09005 * 109.54229 * 179.30366 * 16 15 14 30 30 H 1.08999 * 109.52437 * 303.06090 * 17 16 15 31 31 H 1.09007 * 109.52210 * 63.24286 * 17 16 15 32 32 H 1.08997 * 109.40352 * 297.49670 * 18 17 16 33 33 H 1.08992 * 109.49672 * 177.50770 * 18 17 16 34 34 H 1.09005 * 109.47701 * 301.17080 * 20 19 18 35 35 H 1.09001 * 109.48915 * 181.14872 * 20 19 18 36 36 H 1.09004 * 109.51899 * 182.48713 * 21 20 19 37 37 H 1.09003 * 109.57013 * 62.33491 * 21 20 19 38 38 H 1.09005 * 109.48780 * 303.14431 * 22 15 14 39 39 H 1.09002 * 109.49387 * 183.06567 * 22 15 14 40 40 H 1.09004 * 109.62610 * 350.89417 * 23 12 9 41 41 H 1.09000 * 109.63031 * 111.46887 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.4512 -2.8009 1.2430 11 8 0.4514 -2.7897 -1.2564 12 7 2.2481 -3.9354 -0.0117 13 6 2.7564 -4.4881 -1.2764 14 6 4.2925 -4.4722 -1.2265 15 7 4.7452 -5.1722 -0.0170 16 6 6.2053 -5.3338 -0.0177 17 6 6.8732 -3.9571 -0.0877 18 6 8.3912 -4.1385 -0.1696 19 8 8.7147 -4.9406 -1.3072 20 6 8.1564 -6.2556 -1.2719 21 6 6.6290 -6.1592 -1.2365 22 6 4.2923 -4.4830 1.1986 23 6 2.7608 -4.4952 1.2481 24 1 -0.4850 0.8401 -0.0004 25 1 2.4016 -5.5115 -1.3977 26 1 2.4095 -3.8761 -2.1091 27 1 4.6478 -3.4419 -1.2051 28 1 4.6890 -4.9758 -2.1082 29 1 6.5161 -5.8439 0.8941 30 1 6.5227 -3.4268 -0.9732 31 1 6.6210 -3.3841 0.8046 32 1 8.7463 -4.6313 0.7354 33 1 8.8695 -3.1637 -0.2642 34 1 8.5085 -6.7761 -0.3812 35 1 8.4656 -6.8059 -2.1605 36 1 6.2025 -7.1598 -1.1649 37 1 6.2725 -5.6754 -2.1459 38 1 4.6477 -3.4526 1.1863 39 1 4.6887 -4.9945 2.0758 40 1 2.4167 -3.8879 2.0854 41 1 2.4063 -5.5192 1.3649 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192960831.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:49 Heat of formation + Delta-G solvation = -126.315574 kcal Electronic energy + Delta-G solvation = -24587.652180 eV Core-core repulsion = 21014.977570 eV Total energy + Delta-G solvation = -3572.674610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.10866 -38.03470 -35.30206 -34.86874 -33.96291 -33.09062 -31.53378 -31.08563 -30.66568 -26.25190 -26.13611 -24.07970 -23.35794 -23.24651 -20.83809 -19.48680 -18.41105 -17.52983 -16.63140 -16.24137 -16.15337 -15.44607 -15.09884 -14.98023 -14.80757 -14.58456 -14.39465 -14.11709 -13.82234 -13.51230 -13.24611 -13.01353 -12.34990 -12.02547 -11.87638 -11.76590 -11.58902 -11.44883 -11.25989 -11.16759 -11.02057 -10.87210 -10.74516 -10.61808 -10.38875 -10.30165 -10.09947 -9.98612 -9.74019 -9.27777 -8.94939 -8.40186 -7.98215 -6.71419 -5.33544 2.25282 3.02771 3.11282 3.17754 3.68201 3.89284 4.03723 4.52490 4.57782 4.62107 4.63725 4.82473 4.98337 5.00964 5.14540 5.25184 5.31198 5.38496 5.43769 5.49155 5.57241 5.61920 5.67657 5.73730 5.80533 5.84619 5.89340 5.94547 6.04055 6.10455 6.18063 6.24790 6.42525 6.44719 6.74726 7.00301 7.17545 7.19755 7.31055 7.57165 7.95570 8.87322 10.22062 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.004828 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.592490 B = 5798.207481 C = 6665.903021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.919 3.081 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.019 5.019 8 H 0.099 0.901 9 S 2.715 3.285 10 O -1.004 7.004 11 O -1.004 7.004 12 N -1.014 6.014 13 C 0.133 3.867 14 C 0.035 3.965 15 N -0.527 5.527 16 C 0.085 3.915 17 C -0.195 4.195 18 C 0.067 3.933 19 O -0.385 6.385 20 C 0.062 3.938 21 C -0.150 4.150 22 C 0.040 3.960 23 C 0.133 3.867 24 H 0.290 0.710 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.330 -10.036 0.025 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.743 3.257 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.152 5.152 8 H 0.118 0.882 9 S 2.816 3.184 10 O -0.995 6.995 11 O -0.994 6.994 12 N -0.850 5.850 13 C 0.006 3.994 14 C -0.094 4.094 15 N -0.250 5.250 16 C -0.024 4.024 17 C -0.234 4.234 18 C -0.010 4.010 19 O -0.304 6.304 20 C -0.015 4.015 21 C -0.188 4.188 22 C -0.089 4.089 23 C 0.007 3.993 24 H 0.101 0.899 25 H 0.082 0.918 26 H 0.110 0.890 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.064 -10.515 -0.122 17.561 hybrid contribution 1.188 2.003 0.286 2.346 sum 15.253 -8.513 0.164 17.468 Atomic orbital electron populations 1.69906 1.06756 1.30609 1.40215 1.24745 0.94439 1.00748 0.88530 0.86163 0.80385 0.80571 0.78617 1.18759 1.19563 1.19581 1.30644 1.05956 1.11923 1.66672 0.88224 1.00517 0.72156 0.72941 0.72780 1.93351 1.72762 1.87583 1.45758 1.93351 1.72764 1.87603 1.45714 1.58276 1.62351 1.54401 1.09930 1.21364 0.91866 0.99519 0.86605 1.22701 0.96580 0.97360 0.92797 1.62124 1.09534 1.50663 1.02661 1.21746 0.87538 0.94383 0.98721 1.22949 0.96838 0.99791 1.03815 1.22494 0.94484 0.95512 0.88533 1.87930 1.73622 1.25257 1.43565 1.22580 0.92555 0.84380 1.01966 1.22310 0.96017 1.01583 0.98884 1.22519 0.96798 0.97390 0.92231 1.21257 0.91822 0.99484 0.86773 0.89934 0.91770 0.88973 0.93638 0.90017 0.90094 0.90347 0.90514 0.93330 0.89038 0.93296 0.88833 0.90036 0.90535 0.93752 0.90414 0.88953 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.83 13.19 55.43 0.73 -24.10 16 2 C 0.13 3.71 5.46 -17.82 -0.10 3.61 16 3 Si 0.92 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -1.02 -27.85 9.75 30.60 0.30 -27.55 16 8 H 0.10 2.52 7.81 -52.49 -0.41 2.11 16 9 S 2.71 72.09 4.98 -107.50 -0.54 71.55 16 10 O -1.00 -29.21 16.80 -57.17 -0.96 -30.17 16 11 O -1.00 -29.27 16.79 -57.17 -0.96 -30.23 16 12 N -1.01 -20.60 3.32 -112.97 -0.38 -20.97 16 13 C 0.13 2.30 6.56 -3.36 -0.02 2.28 16 14 C 0.03 0.50 4.78 -3.46 -0.02 0.49 16 15 N -0.53 -6.96 4.62 -225.83 -1.04 -8.00 16 16 C 0.08 0.92 2.31 -67.53 -0.16 0.77 16 17 C -0.19 -2.16 4.74 -26.59 -0.13 -2.28 16 18 C 0.07 0.66 6.84 37.21 0.25 0.91 16 19 O -0.39 -4.31 10.77 -35.23 -0.38 -4.69 16 20 C 0.06 0.55 6.84 37.20 0.25 0.80 16 21 C -0.15 -1.44 5.31 -26.60 -0.14 -1.58 16 22 C 0.04 0.56 5.14 -3.70 -0.02 0.54 16 23 C 0.13 2.28 6.53 -3.60 -0.02 2.26 16 24 H 0.29 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.09 1.68 7.21 -51.92 -0.37 1.31 16 27 H 0.05 0.71 6.65 -51.93 -0.35 0.37 16 28 H 0.08 1.01 5.91 -51.93 -0.31 0.70 16 29 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.08 0.99 6.41 -51.93 -0.33 0.66 16 31 H 0.08 0.87 6.87 -51.93 -0.36 0.51 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.80 6.12 -51.93 -0.32 0.48 16 38 H 0.04 0.67 6.90 -51.93 -0.36 0.31 16 39 H 0.08 0.91 8.06 -51.93 -0.42 0.49 16 40 H 0.09 1.66 7.22 -51.93 -0.37 1.29 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 328.11 15.07 4.94 4.94 Total: -1.00 -34.53 328.11 -9.50 -44.03 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.11 Total: 1.88 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 0.21 Total: -19.75 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.69 Total: -53.08 kcal Atomic # 8 Polarization: -62.79 SS G_CDS: -2.30 Total: -65.09 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 72.09 SS G_CDS: -0.54 Total: 71.55 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.53 -9.50 -44.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960831.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.290 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds