Wall clock time and date at job start Fri Apr 10 2020 17:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 N 1.65600 * 107.21522 * 179.72073 * 9 7 2 13 13 C 1.47079 * 120.88229 * 269.71668 * 12 9 7 14 14 C 1.53700 * 108.27638 * 128.75778 * 13 12 9 15 15 N 1.46895 * 109.25815 * 54.08133 * 14 13 12 16 16 C 1.46897 * 110.99997 * 172.60486 * 15 14 13 17 17 C 1.53178 * 109.54273 * 59.12856 * 16 15 14 18 18 C 1.53102 * 109.16173 * 183.23802 * 17 16 15 19 19 O 1.42901 * 109.48479 * 57.47272 * 18 17 16 20 20 C 1.42905 * 114.10074 * 298.89722 * 19 18 17 21 21 C 1.53089 * 109.41757 * 61.15003 * 20 19 18 22 22 C 1.46898 * 111.27175 * 296.76166 * 15 14 13 23 23 C 1.47080 * 120.88374 * 89.99886 * 12 9 7 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.63392 * 248.52679 * 13 12 9 26 26 H 1.09007 * 109.62749 * 9.10794 * 13 12 9 27 27 H 1.09006 * 109.64136 * 294.07898 * 14 13 12 28 28 H 1.08997 * 109.42094 * 173.95240 * 14 13 12 29 29 H 1.09005 * 109.54229 * 179.30366 * 16 15 14 30 30 H 1.08999 * 109.52437 * 303.06090 * 17 16 15 31 31 H 1.09007 * 109.52210 * 63.24286 * 17 16 15 32 32 H 1.08997 * 109.40352 * 297.49670 * 18 17 16 33 33 H 1.08992 * 109.49672 * 177.50770 * 18 17 16 34 34 H 1.09005 * 109.47701 * 301.17080 * 20 19 18 35 35 H 1.09001 * 109.48915 * 181.14872 * 20 19 18 36 36 H 1.09004 * 109.51899 * 182.48713 * 21 20 19 37 37 H 1.09003 * 109.57013 * 62.33491 * 21 20 19 38 38 H 1.09005 * 109.48780 * 303.14431 * 22 15 14 39 39 H 1.09002 * 109.49387 * 183.06567 * 22 15 14 40 40 H 1.09004 * 109.62610 * 350.89417 * 23 12 9 41 41 H 1.09000 * 109.63031 * 111.46887 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.4512 -2.8009 1.2430 11 8 0.4514 -2.7897 -1.2564 12 7 2.2481 -3.9354 -0.0117 13 6 2.7564 -4.4881 -1.2764 14 6 4.2925 -4.4722 -1.2265 15 7 4.7452 -5.1722 -0.0170 16 6 6.2053 -5.3338 -0.0177 17 6 6.8732 -3.9571 -0.0877 18 6 8.3912 -4.1385 -0.1696 19 8 8.7147 -4.9406 -1.3072 20 6 8.1564 -6.2556 -1.2719 21 6 6.6290 -6.1592 -1.2365 22 6 4.2923 -4.4830 1.1986 23 6 2.7608 -4.4952 1.2481 24 1 -0.4850 0.8401 -0.0004 25 1 2.4016 -5.5115 -1.3977 26 1 2.4095 -3.8761 -2.1091 27 1 4.6478 -3.4419 -1.2051 28 1 4.6890 -4.9758 -2.1082 29 1 6.5161 -5.8439 0.8941 30 1 6.5227 -3.4268 -0.9732 31 1 6.6210 -3.3841 0.8046 32 1 8.7463 -4.6313 0.7354 33 1 8.8695 -3.1637 -0.2642 34 1 8.5085 -6.7761 -0.3812 35 1 8.4656 -6.8059 -2.1605 36 1 6.2025 -7.1598 -1.1649 37 1 6.2725 -5.6754 -2.1459 38 1 4.6477 -3.4526 1.1863 39 1 4.6887 -4.9945 2.0758 40 1 2.4167 -3.8879 2.0854 41 1 2.4063 -5.5192 1.3649 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192960831.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:49 Heat of formation + Delta-G solvation = -154.731970 kcal Electronic energy + Delta-G solvation = -24588.884407 eV Core-core repulsion = 21014.977570 eV Total energy + Delta-G solvation = -3573.906837 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.03366 -39.09124 -37.49560 -36.19326 -36.06444 -35.18416 -32.50284 -32.05194 -31.81958 -28.29232 -27.42309 -25.10155 -24.32982 -24.26347 -22.05650 -20.85866 -20.08474 -19.17737 -18.38574 -17.40148 -17.02057 -16.99156 -16.76127 -16.25060 -16.05655 -15.82512 -15.49012 -15.43026 -15.27594 -14.88354 -14.44275 -14.25184 -13.97988 -13.48139 -13.24735 -13.09132 -13.05167 -12.99451 -12.68377 -12.52510 -12.49569 -12.33595 -12.31976 -12.06635 -11.81899 -11.78458 -11.60929 -11.29910 -11.11152 -10.94716 -10.53936 -9.91781 -9.17539 -8.77370 -7.51513 0.27210 1.28948 1.29899 1.47020 2.16588 2.54176 2.71875 2.90554 3.02913 3.73389 3.75979 3.80354 3.91194 4.01083 4.05421 4.20525 4.25216 4.27621 4.36798 4.38191 4.48333 4.53156 4.56212 4.64678 4.75296 4.79101 4.81243 4.83264 4.91821 4.97466 5.07323 5.12892 5.15422 5.24521 5.29571 5.34801 5.86469 5.93067 6.05856 6.15686 6.30418 6.74836 8.17880 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.004828 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.592490 B = 5798.207481 C = 6665.903021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.988 3.012 4 H -0.250 1.250 5 H -0.258 1.258 6 H -0.257 1.257 7 C -1.036 5.036 8 H 0.113 0.887 9 S 2.718 3.282 10 O -1.040 7.040 11 O -1.041 7.041 12 N -1.011 6.011 13 C 0.125 3.875 14 C 0.044 3.956 15 N -0.524 5.524 16 C 0.085 3.915 17 C -0.192 4.192 18 C 0.069 3.931 19 O -0.406 6.406 20 C 0.061 3.939 21 C -0.145 4.145 22 C 0.046 3.954 23 C 0.124 3.876 24 H 0.299 0.701 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.030 0.970 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.032 0.968 39 H 0.111 0.889 40 H 0.077 0.923 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.160 -10.706 0.362 21.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.142 4.142 3 Si 0.807 3.193 4 H -0.173 1.173 5 H -0.183 1.183 6 H -0.181 1.181 7 C -1.169 5.169 8 H 0.131 0.869 9 S 2.820 3.180 10 O -1.030 7.030 11 O -1.032 7.032 12 N -0.850 5.850 13 C -0.001 4.001 14 C -0.086 4.086 15 N -0.248 5.248 16 C -0.023 4.023 17 C -0.232 4.232 18 C -0.008 4.008 19 O -0.325 6.325 20 C -0.016 4.016 21 C -0.183 4.183 22 C -0.083 4.083 23 C -0.001 4.001 24 H 0.109 0.891 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.049 0.951 28 H 0.124 0.876 29 H 0.117 0.883 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.129 0.871 40 H 0.095 0.905 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.894 -11.211 0.216 20.277 hybrid contribution 0.323 2.085 0.179 2.118 sum 17.217 -9.125 0.395 19.490 Atomic orbital electron populations 1.69994 1.08731 1.32275 1.41506 1.25996 0.95351 1.05264 0.87567 0.85129 0.79360 0.75309 0.79538 1.17320 1.18273 1.18136 1.30947 1.06713 1.12711 1.66539 0.86908 1.00037 0.72768 0.73740 0.71446 1.93290 1.74509 1.88334 1.46909 1.93289 1.74553 1.88371 1.46942 1.57782 1.61621 1.53270 1.12316 1.21613 0.94081 0.99742 0.84619 1.22588 0.94164 0.97190 0.94625 1.62128 1.11370 1.49687 1.01580 1.21868 0.85608 0.94572 1.00258 1.22907 0.97973 0.99644 1.02629 1.22529 0.93378 0.95959 0.88982 1.87911 1.73942 1.26380 1.44256 1.22725 0.91718 0.83651 1.03489 1.22283 0.96788 1.01684 0.97580 1.22462 0.94297 0.97509 0.94030 1.21538 0.94196 0.99725 0.84686 0.89074 0.89974 0.90696 0.95137 0.87606 0.88341 0.92424 0.90878 0.91548 0.88763 0.91670 0.87504 0.88937 0.91661 0.94934 0.87109 0.90460 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.78 13.19 21.45 0.28 -53.49 16 2 C 0.07 3.98 5.46 84.66 0.46 4.44 16 3 Si 0.99 41.60 29.54 68.60 2.03 43.62 16 4 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 7 C -1.04 -57.60 9.75 67.74 0.66 -56.94 16 8 H 0.11 5.75 7.81 -2.91 -0.02 5.72 16 9 S 2.72 149.05 4.98 -56.49 -0.28 148.77 16 10 O -1.04 -62.80 16.80 -128.00 -2.15 -64.95 16 11 O -1.04 -63.18 16.79 -128.00 -2.15 -65.33 16 12 N -1.01 -41.44 3.32 -511.33 -1.70 -43.14 16 13 C 0.12 4.30 6.56 86.50 0.57 4.87 16 14 C 0.04 1.21 4.78 86.54 0.41 1.62 16 15 N -0.52 -12.60 4.62 -868.40 -4.01 -16.61 16 16 C 0.09 1.59 2.31 45.03 0.10 1.69 16 17 C -0.19 -3.88 4.74 30.69 0.15 -3.73 16 18 C 0.07 1.18 6.84 72.02 0.49 1.67 16 19 O -0.41 -8.06 10.77 -148.98 -1.60 -9.67 16 20 C 0.06 0.87 6.84 72.01 0.49 1.37 16 21 C -0.15 -2.34 5.31 30.68 0.16 -2.18 16 22 C 0.05 1.22 5.14 86.38 0.44 1.66 16 23 C 0.12 4.17 6.53 86.35 0.56 4.73 16 24 H 0.30 16.09 8.31 -92.70 -0.77 15.32 16 25 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.07 2.82 7.21 -2.38 -0.02 2.80 16 27 H 0.03 0.94 6.65 -2.38 -0.02 0.93 16 28 H 0.11 2.42 5.91 -2.39 -0.01 2.41 16 29 H 0.10 1.56 8.07 -2.38 -0.02 1.54 16 30 H 0.06 1.40 6.41 -2.39 -0.02 1.39 16 31 H 0.07 1.52 6.87 -2.38 -0.02 1.50 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.06 1.20 6.12 -2.39 -0.01 1.19 16 38 H 0.03 0.94 6.90 -2.38 -0.02 0.92 16 39 H 0.11 2.20 8.06 -2.39 -0.02 2.19 16 40 H 0.08 2.82 7.22 -2.38 -0.02 2.80 16 41 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -76.46 328.11 -4.05 -80.51 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 1.03 Total: 21.07 kcal Atomic # 6 Polarization: -45.29 SS G_CDS: 4.51 Total: -40.78 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -5.43 Total: -113.25 kcal Atomic # 8 Polarization: -134.04 SS G_CDS: -5.90 Total: -139.94 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: 149.05 SS G_CDS: -0.28 Total: 148.77 kcal Total: -76.46 -4.05 -80.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960831.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.226 kcal (2) G-P(sol) polarization free energy of solvation -76.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds