Wall clock time and date at job start Fri Apr 10 2020 17:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99728 * 2 1 4 4 H 1.48498 * 109.47139 * 270.00115 * 3 2 1 5 5 H 1.48495 * 109.47117 * 30.00571 * 3 2 1 6 6 H 1.48504 * 109.46797 * 150.00211 * 3 2 1 7 7 C 1.37873 * 120.00467 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99975 * 359.97438 * 7 2 1 9 9 S 1.76195 * 120.00459 * 180.02562 * 7 2 1 10 10 O 1.42092 * 106.40429 * 66.45269 * 9 7 2 11 11 O 1.42106 * 106.40127 * 293.53418 * 9 7 2 12 12 N 1.65597 * 107.22181 * 179.97438 * 9 7 2 13 13 C 1.47151 * 120.98219 * 269.71629 * 12 9 7 14 14 C 1.53293 * 108.38543 * 129.73515 * 13 12 9 15 15 O 1.42962 * 109.22230 * 52.30787 * 14 13 12 16 16 C 1.42957 * 114.16142 * 297.41398 * 15 14 13 17 17 H 1.09004 * 109.51938 * 302.65992 * 16 15 14 18 18 C 1.53001 * 109.51066 * 182.50554 * 16 15 14 19 19 N 1.46895 * 109.47161 * 65.25866 * 18 16 15 20 20 C 1.48529 * 111.00431 * 52.60212 * 19 18 16 21 21 C 1.54937 * 103.23343 * 159.72237 * 20 19 18 22 22 C 1.54595 * 102.92011 * 322.59041 * 21 20 19 23 23 C 1.47902 * 111.00348 * 170.00260 * 19 18 16 24 24 C 1.47156 * 120.98532 * 89.99651 * 12 9 7 25 25 H 0.97000 * 120.00322 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.68184 * 249.46109 * 13 12 9 27 27 H 1.09003 * 109.67897 * 10.01065 * 13 12 9 28 28 H 1.09001 * 109.51429 * 292.37701 * 14 13 12 29 29 H 1.08999 * 109.51414 * 172.22907 * 14 13 12 30 30 H 1.09005 * 109.47358 * 185.25339 * 18 16 15 31 31 H 1.09000 * 109.47417 * 305.25743 * 18 16 15 32 32 H 1.08998 * 110.66820 * 278.16218 * 20 19 18 33 33 H 1.08998 * 110.66657 * 41.28440 * 20 19 18 34 34 H 1.08995 * 110.72634 * 204.22674 * 21 20 19 35 35 H 1.09005 * 110.72078 * 80.94299 * 21 20 19 36 36 H 1.09006 * 110.30866 * 263.04041 * 22 21 20 37 37 H 1.09000 * 110.31394 * 140.87119 * 22 21 20 38 38 H 1.09008 * 109.91582 * 333.50356 * 23 19 18 39 39 H 1.08998 * 109.92054 * 94.80161 * 23 19 18 40 40 H 1.09002 * 109.67563 * 349.98752 * 24 12 9 41 41 H 1.08998 * 109.67968 * 110.50231 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 16 3.7665 -1.1940 0.0001 10 8 4.1673 -0.6502 1.2502 11 8 4.1683 -0.6488 -1.2492 12 7 4.2568 -2.7757 0.0000 13 6 4.4866 -3.4976 1.2615 14 6 3.7275 -4.8281 1.2022 15 8 4.0817 -5.5191 0.0018 16 6 3.7227 -4.8295 -1.1979 17 1 2.6498 -4.6371 -1.2002 18 6 4.0919 -5.6869 -2.4101 19 7 3.2765 -6.9087 -2.4122 20 6 1.8311 -6.5844 -2.3037 21 6 1.1395 -7.8626 -2.8408 22 6 2.0706 -8.3006 -3.9946 23 6 3.4298 -7.6461 -3.6851 24 6 4.4815 -3.4990 -1.2617 25 1 -0.4850 0.8400 0.0004 26 1 5.5524 -3.6883 1.3864 27 1 4.1192 -2.9022 2.0973 28 1 2.6546 -4.6358 1.2087 29 1 3.9939 -5.4380 2.0654 30 1 3.9046 -5.1235 -3.3243 31 1 5.1473 -5.9545 -2.3580 32 1 1.5541 -6.4046 -1.2650 33 1 1.5826 -5.7231 -2.9237 34 1 0.1422 -7.6330 -3.2158 35 1 1.0950 -8.6305 -2.0685 36 1 1.6858 -7.9403 -4.9488 37 1 2.1682 -9.3861 -4.0108 38 1 3.6999 -6.9555 -4.4841 39 1 4.1961 -8.4140 -3.5795 40 1 4.1107 -2.9045 -2.0966 41 1 5.5470 -3.6892 -1.3910 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192973996.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:51 Heat of formation + Delta-G solvation = -110.494179 kcal Electronic energy + Delta-G solvation = -24443.298191 eV Core-core repulsion = 20871.309649 eV Total energy + Delta-G solvation = -3571.988542 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.56626 -38.27165 -35.78853 -34.52571 -34.27017 -33.25184 -33.07474 -30.46286 -28.93325 -27.20273 -26.44998 -24.95017 -22.88993 -21.51769 -20.84835 -20.11300 -18.68778 -17.62545 -16.87694 -16.42750 -16.13170 -15.92216 -15.37898 -15.13077 -14.76695 -14.40270 -14.01808 -13.81101 -13.66226 -13.38988 -13.22298 -12.90849 -12.78475 -12.27542 -11.99643 -11.79475 -11.55953 -11.46567 -11.42886 -11.32894 -11.09783 -10.92495 -10.85949 -10.66475 -10.65453 -10.54443 -10.16954 -9.92865 -9.78303 -9.26454 -9.05304 -8.40931 -8.21551 -6.86055 -5.40647 1.89934 3.02789 3.12994 3.22221 3.84862 3.90336 3.97047 4.07131 4.52794 4.56367 4.64067 4.85297 5.05459 5.14204 5.21457 5.23660 5.27586 5.32686 5.44245 5.47411 5.53425 5.61244 5.66617 5.69237 5.74475 5.77137 5.83313 5.88885 5.93197 5.99653 6.04392 6.09926 6.13512 6.26965 6.53351 6.86264 6.99117 7.21930 7.42562 7.45728 8.14171 8.64546 10.26137 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.020204 B = 0.004681 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.547086 B = 5979.591809 C = 6547.716987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.154 3.846 3 Si 0.800 3.200 4 H -0.246 1.246 5 H -0.254 1.254 6 H -0.220 1.220 7 C -1.016 5.016 8 H 0.120 0.880 9 S 2.675 3.325 10 O -1.004 7.004 11 O -1.008 7.008 12 N -1.003 6.003 13 C 0.092 3.908 14 C 0.047 3.953 15 O -0.363 6.363 16 C 0.078 3.922 17 H 0.069 0.931 18 C 0.055 3.945 19 N -0.507 5.507 20 C 0.029 3.971 21 C -0.123 4.123 22 C -0.131 4.131 23 C 0.034 3.966 24 C 0.100 3.900 25 H 0.281 0.719 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.396 -13.970 -4.569 15.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.066 4.066 3 Si 0.620 3.380 4 H -0.170 1.170 5 H -0.178 1.178 6 H -0.142 1.142 7 C -1.150 5.150 8 H 0.138 0.862 9 S 2.778 3.222 10 O -0.994 6.994 11 O -0.998 6.998 12 N -0.840 5.840 13 C -0.034 4.034 14 C -0.031 4.031 15 O -0.281 6.281 16 C 0.018 3.982 17 H 0.087 0.913 18 C -0.074 4.074 19 N -0.231 5.231 20 C -0.098 4.098 21 C -0.161 4.161 22 C -0.169 4.169 23 C -0.094 4.094 24 C -0.027 4.027 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.115 -13.629 -4.119 15.129 hybrid contribution -0.865 1.290 -0.663 1.689 sum 4.250 -12.339 -4.781 13.899 Atomic orbital electron populations 1.69981 1.06566 1.29099 1.39429 1.24420 0.94780 0.98775 0.88604 0.87882 0.83629 0.84575 0.81898 1.16976 1.17773 1.14205 1.30507 1.15554 1.02089 1.66857 0.86216 1.01497 0.77315 0.70098 0.73269 1.93455 1.85359 1.75483 1.45114 1.93399 1.85351 1.75621 1.45412 1.57830 1.84683 1.31358 1.10080 1.21945 1.00592 0.94135 0.86721 1.22960 0.99105 0.93175 0.87850 1.87964 1.82395 1.44954 1.12836 1.22534 0.99033 0.91020 0.85600 0.91273 1.22298 0.99416 0.90175 0.95492 1.64796 1.05845 1.20042 1.32456 1.23304 0.87978 0.96701 1.01830 1.22470 0.98175 0.97663 0.97818 1.22397 0.95026 1.00835 0.98634 1.22899 0.97965 0.97945 0.90632 1.21863 1.00499 0.93333 0.87008 0.90848 0.91399 0.88267 0.92414 0.88214 0.92807 0.89524 0.89643 0.93456 0.91125 0.90787 0.91650 0.91181 0.93820 0.90436 0.88436 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.41 13.96 55.43 0.77 -22.64 16 2 C 0.15 4.37 5.47 -17.82 -0.10 4.27 16 3 Si 0.80 20.40 26.54 -169.99 -4.51 15.89 16 4 H -0.25 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.25 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.22 -5.72 5.61 56.52 0.32 -5.41 16 7 C -1.02 -27.92 10.29 30.60 0.31 -27.60 16 8 H 0.12 3.32 8.06 -52.48 -0.42 2.90 16 9 S 2.67 66.66 4.20 -107.50 -0.45 66.21 16 10 O -1.00 -26.63 14.82 -57.17 -0.85 -27.48 16 11 O -1.01 -26.62 15.64 -57.17 -0.89 -27.51 16 12 N -1.00 -19.82 3.34 -113.06 -0.38 -20.20 16 13 C 0.09 1.54 6.57 -3.54 -0.02 1.52 16 14 C 0.05 0.70 6.98 37.31 0.26 0.96 16 15 O -0.36 -5.71 10.34 -35.23 -0.36 -6.08 16 16 C 0.08 1.19 2.50 -26.58 -0.07 1.13 16 17 H 0.07 1.14 6.52 -51.93 -0.34 0.80 16 18 C 0.05 0.71 4.70 -3.83 -0.02 0.69 16 19 N -0.51 -6.39 5.35 -230.45 -1.23 -7.63 16 20 C 0.03 0.36 5.09 -1.90 -0.01 0.35 16 21 C -0.12 -1.24 7.06 -24.87 -0.18 -1.41 16 22 C -0.13 -1.18 6.93 -25.37 -0.18 -1.35 16 23 C 0.03 0.34 6.70 -2.75 -0.02 0.32 16 24 C 0.10 1.70 5.85 -3.53 -0.02 1.68 16 25 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.10 1.70 7.25 -51.93 -0.38 1.32 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.64 7.81 -51.93 -0.41 0.23 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.15 7.56 -51.93 -0.39 0.76 16 33 H 0.05 0.60 8.01 -51.93 -0.42 0.18 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.04 0.42 7.57 -51.92 -0.39 0.03 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 1.70 7.26 -51.93 -0.38 1.32 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 331.88 15.07 5.00 5.00 Total: -1.00 -32.39 331.88 -9.50 -41.89 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.57 Total: 1.98 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -0.03 Total: -19.44 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.84 Total: -50.46 kcal Atomic # 8 Polarization: -58.97 SS G_CDS: -2.11 Total: -61.07 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.51 Total: 15.89 kcal Atomic # 16 Polarization: 66.66 SS G_CDS: -0.45 Total: 66.21 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.39 -9.50 -41.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192973996.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.599 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds