Wall clock time and date at job start Fri Apr 10 2020 17:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00206 * 2 1 4 4 H 1.48500 * 109.47106 * 239.99837 * 3 2 1 5 5 H 1.48506 * 109.46773 * 359.97438 * 3 2 1 6 6 H 1.48489 * 109.47479 * 119.99480 * 3 2 1 7 7 C 1.37882 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99916 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99717 * 0.02562 * 7 2 1 10 10 O 1.42103 * 106.40464 * 66.45636 * 9 7 2 11 11 O 1.42104 * 106.40060 * 293.54088 * 9 7 2 12 12 N 1.65596 * 107.21848 * 179.97438 * 9 7 2 13 13 C 1.47154 * 120.98347 * 270.02226 * 12 9 7 14 14 C 1.53292 * 108.38189 * 230.51378 * 13 12 9 15 15 O 1.42950 * 109.26672 * 307.71784 * 14 13 12 16 16 C 1.42960 * 114.16987 * 62.50260 * 15 14 13 17 17 H 1.09005 * 109.51677 * 57.45280 * 16 15 14 18 18 C 1.53000 * 109.51527 * 177.55158 * 16 15 14 19 19 N 1.46904 * 109.47094 * 299.89915 * 18 16 15 20 20 C 1.47845 * 110.99935 * 69.15633 * 19 18 16 21 21 C 1.54908 * 104.79717 * 146.36210 * 20 19 18 22 22 C 1.55147 * 101.65049 * 322.93105 * 21 20 19 23 23 C 1.47439 * 110.99753 * 189.99635 * 19 18 16 24 24 C 1.47154 * 120.98219 * 89.99821 * 12 9 7 25 25 H 0.97008 * 120.00028 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.67964 * 350.23553 * 13 12 9 27 27 H 1.08992 * 109.68017 * 110.78667 * 13 12 9 28 28 H 1.08994 * 109.51263 * 67.62114 * 14 13 12 29 29 H 1.09002 * 109.50844 * 187.71642 * 14 13 12 30 30 H 1.09000 * 109.47234 * 179.89604 * 18 16 15 31 31 H 1.09002 * 109.46955 * 59.89832 * 18 16 15 32 32 H 1.09005 * 110.37246 * 27.53168 * 20 19 18 33 33 H 1.08998 * 110.37354 * 265.19404 * 20 19 18 34 34 H 1.08996 * 110.99351 * 204.83721 * 21 20 19 35 35 H 1.09002 * 110.98650 * 81.01419 * 21 20 19 36 36 H 1.09000 * 110.70281 * 154.03642 * 22 21 20 37 37 H 1.09000 * 110.70143 * 277.26807 * 22 21 20 38 38 H 1.09003 * 109.88723 * 117.34017 * 23 19 18 39 39 H 1.08999 * 109.89041 * 356.15407 * 23 19 18 40 40 H 1.09001 * 109.68178 * 9.76745 * 24 12 9 41 41 H 1.08999 * 109.68600 * 249.21197 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4518 -2.7956 -1.2494 11 8 0.4509 -2.7950 1.2501 12 7 2.2482 -3.9354 0.0005 13 6 2.7631 -4.4911 -1.2610 14 6 2.6467 -6.0183 -1.1997 15 8 3.2635 -6.4906 0.0003 16 6 2.6465 -6.0186 1.2004 17 1 1.5945 -6.3042 1.2056 18 6 3.3489 -6.6340 2.4124 19 7 3.2390 -8.0976 2.3511 20 6 4.0499 -8.6439 1.2422 21 6 4.5549 -10.0141 1.7590 22 6 4.8189 -9.7063 3.2565 23 6 3.6911 -8.7146 3.6116 24 6 2.7628 -4.4914 1.2621 25 1 -0.4850 0.8401 -0.0004 26 1 2.1750 -4.1113 -2.0965 27 1 3.8078 -4.2072 -1.3879 28 1 1.5948 -6.3038 -1.2042 29 1 3.1465 -6.4565 -2.0636 30 1 2.8791 -6.2723 3.3270 31 1 4.4007 -6.3481 2.4066 32 1 4.8918 -7.9855 1.0276 33 1 3.4349 -8.7771 0.3522 34 1 5.4744 -10.3077 1.2527 35 1 3.7877 -10.7803 1.6473 36 1 4.7381 -10.6128 3.8563 37 1 5.7961 -9.2417 3.3879 38 1 2.8640 -9.2467 4.0816 39 1 4.0712 -7.9465 4.2850 40 1 2.1744 -4.1119 2.0975 41 1 3.8075 -4.2076 1.3894 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192973997.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:53 Heat of formation + Delta-G solvation = -153.786602 kcal Electronic energy + Delta-G solvation = -24197.270851 eV Core-core repulsion = 20623.405008 eV Total energy + Delta-G solvation = -3573.865843 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.67670 -39.25754 -37.53868 -36.21026 -35.69393 -35.14723 -34.22005 -31.47175 -29.68929 -28.56038 -28.23867 -26.07241 -23.95747 -22.09764 -21.80303 -21.58645 -20.79567 -19.19569 -18.45281 -17.60411 -17.32433 -17.03392 -16.82384 -16.45918 -16.03852 -15.64307 -15.56538 -15.14303 -15.06961 -14.69609 -14.25142 -14.00320 -13.83881 -13.43743 -13.35579 -13.22376 -13.02276 -12.79858 -12.56692 -12.49463 -12.42494 -12.34521 -12.24946 -12.13251 -12.01426 -11.83910 -11.46988 -11.33493 -11.26884 -11.10684 -10.94265 -9.68246 -9.20304 -8.77624 -7.53351 0.20906 1.31553 1.33845 1.47220 2.17524 2.54040 2.66889 2.77403 3.02384 3.71791 3.73832 3.84331 3.91311 3.96324 4.02443 4.09736 4.19409 4.29030 4.31277 4.45403 4.51437 4.54070 4.61256 4.67356 4.72243 4.74167 4.81977 4.89106 5.01173 5.03120 5.09994 5.13747 5.15502 5.27001 5.33237 5.42248 5.80889 5.85361 6.13284 6.13943 6.20628 6.73845 8.17125 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.029824 B = 0.003736 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.618274 B = 7492.715462 C = 7746.809325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.991 3.009 4 H -0.250 1.250 5 H -0.262 1.262 6 H -0.250 1.250 7 C -1.043 5.043 8 H 0.118 0.882 9 S 2.718 3.282 10 O -1.037 7.037 11 O -1.037 7.037 12 N -1.012 6.012 13 C 0.079 3.921 14 C 0.055 3.945 15 O -0.368 6.368 16 C 0.091 3.909 17 H 0.050 0.950 18 C 0.066 3.934 19 N -0.546 5.546 20 C 0.057 3.943 21 C -0.130 4.130 22 C -0.136 4.136 23 C 0.036 3.964 24 C 0.091 3.909 25 H 0.300 0.700 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.138 0.862 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.649 -15.508 3.574 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.143 4.143 3 Si 0.808 3.192 4 H -0.173 1.173 5 H -0.186 1.186 6 H -0.173 1.173 7 C -1.177 5.177 8 H 0.136 0.864 9 S 2.821 3.179 10 O -1.028 7.028 11 O -1.028 7.028 12 N -0.850 5.850 13 C -0.046 4.046 14 C -0.023 4.023 15 O -0.286 6.286 16 C 0.031 3.969 17 H 0.068 0.932 18 C -0.062 4.062 19 N -0.271 5.271 20 C -0.070 4.070 21 C -0.168 4.168 22 C -0.175 4.175 23 C -0.091 4.091 24 C -0.035 4.035 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.156 0.844 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.142 -15.817 3.494 19.660 hybrid contribution 0.836 1.795 -0.003 1.980 sum 11.977 -14.022 3.491 18.769 Atomic orbital electron populations 1.69980 1.08793 1.32505 1.41259 1.26048 0.95400 1.05416 0.87459 0.85159 0.78813 0.74404 0.80805 1.17341 1.18628 1.17320 1.30960 1.07090 1.12701 1.66918 0.86408 1.00042 0.72680 0.73657 0.71545 1.93288 1.74378 1.88263 1.46841 1.93289 1.74363 1.88251 1.46869 1.57799 1.61825 1.53499 1.11921 1.22234 1.01030 0.95872 0.85437 1.22994 0.98458 0.92046 0.88833 1.87927 1.56716 1.70725 1.13282 1.22353 0.97035 0.91246 0.86302 0.93152 1.22256 0.99562 0.88412 0.96015 1.63473 1.54771 1.04339 1.04495 1.22968 0.95294 0.94776 0.94008 1.22771 1.01525 0.96781 0.95727 1.22757 0.98266 0.99810 0.96632 1.22898 0.97554 0.97375 0.91268 1.22091 1.01000 0.94591 0.85837 0.88996 0.89428 0.89364 0.93878 0.84445 0.88437 0.92815 0.93670 0.91104 0.89846 0.90971 0.89513 0.91174 0.90460 0.92109 0.89504 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.75 13.19 21.45 0.28 -53.47 16 2 C 0.07 3.90 5.46 84.66 0.46 4.37 16 3 Si 0.99 41.27 29.54 68.60 2.03 43.30 16 4 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 5 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 6 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 7 C -1.04 -58.11 9.75 67.74 0.66 -57.45 16 8 H 0.12 5.93 7.81 -2.91 -0.02 5.91 16 9 S 2.72 148.60 5.03 -56.49 -0.28 148.32 16 10 O -1.04 -62.27 16.64 -128.00 -2.13 -64.40 16 11 O -1.04 -62.41 16.64 -128.00 -2.13 -64.54 16 12 N -1.01 -41.60 3.34 -511.62 -1.71 -43.31 16 13 C 0.08 2.67 6.71 86.35 0.58 3.25 16 14 C 0.05 1.50 6.98 72.08 0.50 2.01 16 15 O -0.37 -10.31 7.41 -148.98 -1.10 -11.42 16 16 C 0.09 2.72 3.03 30.69 0.09 2.81 16 17 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 18 C 0.07 1.60 4.45 86.30 0.38 1.98 16 19 N -0.55 -12.53 5.16 -885.54 -4.57 -17.10 16 20 C 0.06 1.20 5.02 86.77 0.44 1.64 16 21 C -0.13 -2.05 7.08 31.98 0.23 -1.82 16 22 C -0.14 -1.93 6.94 31.78 0.22 -1.71 16 23 C 0.04 0.65 6.86 86.65 0.59 1.24 16 24 C 0.09 3.15 6.00 86.35 0.52 3.67 16 25 H 0.30 16.17 8.31 -92.70 -0.77 15.40 16 26 H 0.09 3.17 6.94 -2.39 -0.02 3.15 16 27 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.14 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.10 2.17 8.03 -2.39 -0.02 2.15 16 31 H 0.05 1.20 7.85 -2.39 -0.02 1.18 16 32 H 0.04 1.00 7.26 -2.38 -0.02 0.99 16 33 H 0.07 1.68 7.39 -2.39 -0.02 1.66 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 0.99 7.55 -2.39 -0.02 0.98 16 40 H 0.09 3.25 6.95 -2.39 -0.02 3.23 16 41 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -75.53 336.06 -3.93 -79.46 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 1.01 Total: 23.18 kcal Atomic # 6 Polarization: -44.70 SS G_CDS: 4.68 Total: -40.02 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -6.00 Total: -113.88 kcal Atomic # 8 Polarization: -134.99 SS G_CDS: -5.36 Total: -140.36 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: 148.60 SS G_CDS: -0.28 Total: 148.32 kcal Total: -75.53 -3.93 -79.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192973997.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.324 kcal (2) G-P(sol) polarization free energy of solvation -75.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds