Wall clock time and date at job start Fri Apr 10 2020 17:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36898 * 119.99886 * 2 1 4 4 H 1.07997 * 119.99504 * 212.71525 * 3 2 1 5 5 C 1.39024 * 119.99932 * 32.71254 * 3 2 1 6 6 N 1.31378 * 120.00196 * 22.24002 * 5 3 2 7 7 Si 1.86805 * 119.99760 * 202.23576 * 5 3 2 8 8 H 1.48499 * 109.47158 * 60.00029 * 7 5 3 9 9 H 1.48493 * 109.47093 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46963 * 300.00187 * 7 5 3 11 11 C 1.34776 * 119.99757 * 179.97438 * 2 1 3 12 12 O 1.21629 * 119.99288 * 170.31025 * 11 2 1 13 13 C 1.47481 * 120.00236 * 350.31449 * 11 2 1 14 14 C 1.39812 * 120.07718 * 224.10943 * 13 11 2 15 15 C 1.37651 * 119.91903 * 180.02562 * 14 13 11 16 16 C 1.39148 * 120.07864 * 0.02574 * 15 14 13 17 17 N 1.39447 * 119.92165 * 179.97438 * 16 15 14 18 18 C 1.46090 * 118.72514 * 72.49949 * 17 16 15 19 19 C 1.53028 * 109.92248 * 161.36129 * 18 17 16 20 20 O 1.43242 * 108.66480 * 49.16822 * 19 18 17 21 21 C 1.42967 * 112.98812 * 291.63275 * 20 19 18 22 22 C 1.33867 * 118.73056 * 252.23565 * 17 16 15 23 23 O 1.21279 * 118.83437 * 2.15902 * 22 17 16 24 24 C 1.39151 * 120.16069 * 0.23538 * 16 15 14 25 25 C 1.37650 * 120.07596 * 359.47878 * 24 16 15 26 26 H 1.09002 * 109.47412 * 216.39286 * 1 2 3 27 27 H 1.08997 * 109.47430 * 336.38932 * 1 2 3 28 28 H 1.08996 * 109.47283 * 96.39286 * 1 2 3 29 29 H 0.96997 * 120.00255 * 179.97438 * 6 5 3 30 30 H 1.08001 * 120.04233 * 0.02562 * 14 13 11 31 31 H 1.08002 * 119.95977 * 180.02562 * 15 14 13 32 32 H 1.08993 * 109.39971 * 281.50328 * 18 17 16 33 33 H 1.09004 * 109.39780 * 41.32260 * 18 17 16 34 34 H 1.08999 * 109.60067 * 168.91917 * 19 18 17 35 35 H 1.08998 * 109.60331 * 289.24496 * 19 18 17 36 36 H 1.08992 * 109.41628 * 169.70708 * 21 20 19 37 37 H 1.09009 * 109.41408 * 289.50029 * 21 20 19 38 38 H 1.07999 * 119.96110 * 179.74793 * 24 16 15 39 39 H 1.08001 * 120.03659 * 180.28002 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 3.1009 1.2597 -0.5055 5 6 1.6197 2.2941 0.6507 6 7 0.7312 2.1332 1.6050 7 14 2.1713 4.0123 0.1680 8 1 1.8537 4.2505 -1.2629 9 1 1.4632 5.0131 1.0060 10 1 3.6359 4.1392 0.3777 11 6 2.1388 -1.1672 0.0005 12 8 3.3421 -1.1747 -0.1768 13 6 1.4172 -2.4353 0.2160 14 6 1.9440 -3.4040 1.0755 15 6 1.2680 -4.5865 1.2738 16 6 0.0620 -4.8186 0.6196 17 7 -0.6198 -6.0180 0.8224 18 6 -1.2905 -6.2367 2.1017 19 6 -2.3305 -7.3505 1.9615 20 8 -1.7162 -8.4728 1.3175 21 6 -1.3883 -8.2207 -0.0510 22 6 -0.6389 -6.9222 -0.1645 23 8 -0.0302 -6.6856 -1.1864 24 6 -0.4626 -3.8590 -0.2408 25 6 0.2050 -2.6717 -0.4393 26 1 -0.3634 -0.8272 0.6097 27 1 -0.3634 0.9416 0.4116 28 1 -0.3633 -0.1144 -1.0212 29 1 0.3619 2.9065 2.0592 30 1 2.8802 -3.2247 1.5833 31 1 1.6741 -5.3351 1.9380 32 1 -0.5538 -6.5217 2.8527 33 1 -1.7867 -5.3171 2.4121 34 1 -2.6862 -7.6450 2.9489 35 1 -3.1684 -6.9951 1.3619 36 1 -0.7670 -9.0320 -0.4301 37 1 -2.3048 -8.1626 -0.6384 38 1 -1.3968 -4.0442 -0.7500 39 1 -0.2050 -1.9255 -1.1038 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196266675.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:20 Heat of formation + Delta-G solvation = -51.415807 kcal Electronic energy + Delta-G solvation = -24578.720525 eV Core-core repulsion = 20873.849862 eV Total energy + Delta-G solvation = -3704.870663 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.22349 -39.34557 -38.07454 -37.48324 -35.36214 -34.75815 -31.96453 -30.89637 -30.66654 -29.85200 -27.45992 -26.33786 -24.88753 -24.26966 -22.66357 -22.29863 -19.77203 -19.30934 -17.92724 -17.82370 -17.04920 -16.53074 -16.31931 -15.70377 -15.47622 -15.33945 -14.93456 -14.51032 -14.26558 -14.01028 -13.76626 -13.62776 -13.33545 -13.21385 -13.01436 -12.33216 -12.12012 -12.05559 -11.75920 -11.62391 -11.47212 -11.40172 -11.01539 -10.85491 -10.70603 -10.45373 -10.38387 -9.73884 -9.27706 -9.08200 -8.67668 -8.59517 -8.23078 -7.57000 -6.43729 -4.01555 1.25835 1.67762 2.26750 2.53736 3.14468 3.20732 3.25101 3.33083 3.60038 3.99292 4.08430 4.28263 4.38669 4.56179 4.75572 4.80679 4.87600 4.95909 5.04292 5.12812 5.15765 5.18779 5.33553 5.56992 5.62559 5.67042 5.81801 6.23182 6.24617 6.31277 6.41811 6.49438 6.59740 6.64336 6.84934 7.05551 7.13048 7.19473 7.50525 7.87413 8.13491 8.41335 9.07127 9.29256 9.89571 10.58052 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.033468 B = 0.003141 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.413961 B = 8911.611204 C = 9176.513002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.431 5.431 3 C -0.310 4.310 4 H 0.098 0.902 5 C 0.034 3.966 6 N -0.863 5.863 7 Si 0.924 3.076 8 H -0.272 1.272 9 H -0.283 1.283 10 H -0.270 1.270 11 C 0.486 3.514 12 O -0.579 6.579 13 C -0.083 4.083 14 C -0.071 4.071 15 C -0.118 4.118 16 C 0.121 3.879 17 N -0.559 5.559 18 C 0.079 3.921 19 C 0.044 3.956 20 O -0.370 6.370 21 C 0.053 3.947 22 C 0.484 3.516 23 O -0.523 6.523 24 C -0.108 4.108 25 C -0.095 4.095 26 H 0.049 0.951 27 H 0.106 0.894 28 H 0.029 0.971 29 H 0.271 0.729 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.066 0.934 36 H 0.132 0.868 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.505 -16.381 2.699 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.148 5.148 3 C -0.437 4.437 4 H 0.116 0.884 5 C -0.170 4.170 6 N -0.500 5.500 7 Si 0.750 3.250 8 H -0.197 1.197 9 H -0.209 1.209 10 H -0.196 1.196 11 C 0.275 3.725 12 O -0.463 6.463 13 C -0.087 4.087 14 C -0.091 4.091 15 C -0.138 4.138 16 C 0.031 3.969 17 N -0.290 5.290 18 C -0.043 4.043 19 C -0.033 4.033 20 O -0.288 6.288 21 C -0.026 4.026 22 C 0.272 3.728 23 O -0.398 6.398 24 C -0.128 4.128 25 C -0.114 4.114 26 H 0.068 0.932 27 H 0.124 0.876 28 H 0.047 0.953 29 H 0.081 0.919 30 H 0.150 0.850 31 H 0.141 0.859 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.136 0.864 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.110 0.890 38 H 0.137 0.863 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.695 -16.307 2.299 19.636 hybrid contribution -0.071 1.084 -0.098 1.091 sum -10.766 -15.223 2.201 18.775 Atomic orbital electron populations 1.22119 0.82061 1.05264 0.98197 1.43393 1.05148 1.04448 1.61801 1.19553 1.06283 0.85598 1.32293 0.88406 1.25408 0.97152 1.00611 0.93863 1.69905 1.29572 1.31582 1.18957 0.86039 0.79227 0.80990 0.78770 1.19721 1.20864 1.19554 1.18207 0.86966 0.83564 0.83798 1.90631 1.14489 1.86920 1.54288 1.20465 0.95037 0.95942 0.97220 1.21002 0.99292 0.91802 0.96960 1.21004 0.93737 0.97739 1.01277 1.17518 0.93061 0.86091 1.00255 1.44880 1.52454 1.16105 1.15538 1.22287 0.96301 1.00387 0.85353 1.23044 0.94142 0.86140 0.99956 1.88194 1.80342 1.36903 1.23405 1.22849 1.00116 0.95091 0.84589 1.21136 0.82011 0.86242 0.83400 1.90810 1.42729 1.77710 1.28538 1.20982 1.00136 0.92973 0.98662 1.21495 0.94139 0.96638 0.99174 0.93198 0.87589 0.95259 0.91912 0.85020 0.85939 0.90226 0.88997 0.86380 0.91613 0.85042 0.89023 0.86282 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.48 8.47 59.85 0.51 1.99 16 2 N -0.43 -11.20 2.95 -123.40 -0.36 -11.57 16 3 C -0.31 -8.64 9.06 -15.00 -0.14 -8.77 16 4 H 0.10 2.85 7.60 -52.49 -0.40 2.45 16 5 C 0.03 0.90 4.93 -17.45 -0.09 0.81 16 6 N -0.86 -22.71 11.26 55.50 0.62 -22.09 16 7 Si 0.92 20.23 29.61 -169.99 -5.03 15.19 16 8 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 9 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 C 0.49 12.52 7.21 -12.49 -0.09 12.43 16 12 O -0.58 -16.88 16.77 5.25 0.09 -16.79 16 13 C -0.08 -1.74 5.18 -104.95 -0.54 -2.29 16 14 C -0.07 -1.33 9.67 -39.21 -0.38 -1.71 16 15 C -0.12 -1.86 9.88 -39.46 -0.39 -2.25 16 16 C 0.12 1.84 4.43 -83.72 -0.37 1.47 16 17 N -0.56 -6.86 2.86 -114.11 -0.33 -7.18 16 18 C 0.08 0.64 6.58 -4.25 -0.03 0.61 16 19 C 0.04 0.27 6.89 37.17 0.26 0.52 16 20 O -0.37 -3.10 10.85 -35.23 -0.38 -3.49 16 21 C 0.05 0.45 6.99 35.84 0.25 0.70 16 22 C 0.48 6.24 7.47 -11.56 -0.09 6.16 16 23 O -0.52 -9.04 16.61 5.56 0.09 -8.94 16 24 C -0.11 -1.71 9.53 -39.46 -0.38 -2.09 16 25 C -0.10 -1.71 7.55 -39.21 -0.30 -2.01 16 26 H 0.05 1.00 5.82 -51.93 -0.30 0.70 16 27 H 0.11 2.51 5.27 -51.93 -0.27 2.24 16 28 H 0.03 0.57 7.03 -51.93 -0.37 0.20 16 29 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 30 H 0.13 2.45 8.06 -52.49 -0.42 2.02 16 31 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.66 8.11 -51.93 -0.42 0.24 16 34 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 36 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 0.60 8.14 -51.92 -0.42 0.17 16 38 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 39 H 0.14 2.33 5.61 -52.49 -0.29 2.03 16 LS Contribution 328.67 15.07 4.95 4.95 Total: -1.00 -34.83 328.67 -6.69 -41.52 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.57 Total: 2.83 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -1.77 Total: 5.57 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: -0.07 Total: -40.84 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.20 Total: -29.22 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.83 -6.69 -41.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196266675.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.896 kcal (2) G-P(sol) polarization free energy of solvation -34.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds