Wall clock time and date at job start Fri Apr 10 2020 17:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36898 * 119.99886 * 2 1 4 4 H 1.07997 * 119.99504 * 212.71525 * 3 2 1 5 5 C 1.39024 * 119.99932 * 32.71254 * 3 2 1 6 6 N 1.31378 * 120.00196 * 22.24002 * 5 3 2 7 7 Si 1.86805 * 119.99760 * 202.23576 * 5 3 2 8 8 H 1.48499 * 109.47158 * 60.00029 * 7 5 3 9 9 H 1.48493 * 109.47093 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46963 * 300.00187 * 7 5 3 11 11 C 1.34776 * 119.99757 * 179.97438 * 2 1 3 12 12 O 1.21629 * 119.99288 * 170.31025 * 11 2 1 13 13 C 1.47481 * 120.00236 * 350.31449 * 11 2 1 14 14 C 1.39812 * 120.07718 * 224.10943 * 13 11 2 15 15 C 1.37651 * 119.91903 * 180.02562 * 14 13 11 16 16 C 1.39148 * 120.07864 * 0.02574 * 15 14 13 17 17 N 1.39447 * 119.92165 * 179.97438 * 16 15 14 18 18 C 1.46090 * 118.72514 * 72.49949 * 17 16 15 19 19 C 1.53028 * 109.92248 * 161.36129 * 18 17 16 20 20 O 1.43242 * 108.66480 * 49.16822 * 19 18 17 21 21 C 1.42967 * 112.98812 * 291.63275 * 20 19 18 22 22 C 1.33867 * 118.73056 * 252.23565 * 17 16 15 23 23 O 1.21279 * 118.83437 * 2.15902 * 22 17 16 24 24 C 1.39151 * 120.16069 * 0.23538 * 16 15 14 25 25 C 1.37650 * 120.07596 * 359.47878 * 24 16 15 26 26 H 1.09002 * 109.47412 * 216.39286 * 1 2 3 27 27 H 1.08997 * 109.47430 * 336.38932 * 1 2 3 28 28 H 1.08996 * 109.47283 * 96.39286 * 1 2 3 29 29 H 0.96997 * 120.00255 * 179.97438 * 6 5 3 30 30 H 1.08001 * 120.04233 * 0.02562 * 14 13 11 31 31 H 1.08002 * 119.95977 * 180.02562 * 15 14 13 32 32 H 1.08993 * 109.39971 * 281.50328 * 18 17 16 33 33 H 1.09004 * 109.39780 * 41.32260 * 18 17 16 34 34 H 1.08999 * 109.60067 * 168.91917 * 19 18 17 35 35 H 1.08998 * 109.60331 * 289.24496 * 19 18 17 36 36 H 1.08992 * 109.41628 * 169.70708 * 21 20 19 37 37 H 1.09009 * 109.41408 * 289.50029 * 21 20 19 38 38 H 1.07999 * 119.96110 * 179.74793 * 24 16 15 39 39 H 1.08001 * 120.03659 * 180.28002 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 3.1009 1.2597 -0.5055 5 6 1.6197 2.2941 0.6507 6 7 0.7312 2.1332 1.6050 7 14 2.1713 4.0123 0.1680 8 1 1.8537 4.2505 -1.2629 9 1 1.4632 5.0131 1.0060 10 1 3.6359 4.1392 0.3777 11 6 2.1388 -1.1672 0.0005 12 8 3.3421 -1.1747 -0.1768 13 6 1.4172 -2.4353 0.2160 14 6 1.9440 -3.4040 1.0755 15 6 1.2680 -4.5865 1.2738 16 6 0.0620 -4.8186 0.6196 17 7 -0.6198 -6.0180 0.8224 18 6 -1.2905 -6.2367 2.1017 19 6 -2.3305 -7.3505 1.9615 20 8 -1.7162 -8.4728 1.3175 21 6 -1.3883 -8.2207 -0.0510 22 6 -0.6389 -6.9222 -0.1645 23 8 -0.0302 -6.6856 -1.1864 24 6 -0.4626 -3.8590 -0.2408 25 6 0.2050 -2.6717 -0.4393 26 1 -0.3634 -0.8272 0.6097 27 1 -0.3634 0.9416 0.4116 28 1 -0.3633 -0.1144 -1.0212 29 1 0.3619 2.9065 2.0592 30 1 2.8802 -3.2247 1.5833 31 1 1.6741 -5.3351 1.9380 32 1 -0.5538 -6.5217 2.8527 33 1 -1.7867 -5.3171 2.4121 34 1 -2.6862 -7.6450 2.9489 35 1 -3.1684 -6.9951 1.3619 36 1 -0.7670 -9.0320 -0.4301 37 1 -2.3048 -8.1626 -0.6384 38 1 -1.3968 -4.0442 -0.7500 39 1 -0.2050 -1.9255 -1.1038 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196266675.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:19 Heat of formation + Delta-G solvation = -75.694656 kcal Electronic energy + Delta-G solvation = -24579.773335 eV Core-core repulsion = 20873.849862 eV Total energy + Delta-G solvation = -3705.923473 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.20508 -40.94489 -39.23416 -38.68139 -36.79928 -36.41664 -33.89550 -32.14333 -31.83291 -30.87301 -28.53759 -28.06872 -26.64751 -25.10689 -24.00963 -23.64996 -21.33692 -20.39850 -19.11565 -18.77577 -18.65158 -18.19665 -17.37280 -17.04085 -16.45456 -16.37625 -16.33643 -16.12980 -15.63160 -15.47180 -15.14067 -14.81480 -14.57023 -14.42726 -14.01172 -13.94584 -13.56328 -13.45148 -13.32829 -13.21331 -12.76712 -12.62406 -12.48777 -12.36576 -12.18092 -12.14383 -11.56577 -11.08082 -10.68241 -10.52657 -10.28241 -10.04876 -9.63688 -9.55454 -8.43416 -6.12463 -0.15689 0.30868 1.30283 1.37750 1.41550 1.52230 1.63271 1.90136 2.25149 2.61366 2.78742 2.93136 3.02743 3.31172 3.75599 3.80315 3.85134 3.91784 4.10409 4.19461 4.25441 4.28602 4.36330 4.47183 4.52328 4.58838 4.73542 4.80313 4.82273 4.93072 5.02167 5.24812 5.26171 5.31344 5.39404 5.44688 5.71635 5.90530 6.09891 6.18686 6.41743 6.89293 7.04054 7.30497 7.90413 8.57728 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.033468 B = 0.003141 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.413961 B = 8911.611204 C = 9176.513002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.442 5.442 3 C -0.356 4.356 4 H 0.069 0.931 5 C 0.007 3.993 6 N -0.878 5.878 7 Si 0.990 3.010 8 H -0.264 1.264 9 H -0.266 1.266 10 H -0.276 1.276 11 C 0.474 3.526 12 O -0.631 6.631 13 C -0.116 4.116 14 C -0.080 4.080 15 C -0.112 4.112 16 C 0.135 3.865 17 N -0.560 5.560 18 C 0.070 3.930 19 C 0.046 3.954 20 O -0.378 6.378 21 C 0.063 3.937 22 C 0.480 3.520 23 O -0.575 6.575 24 C -0.105 4.105 25 C -0.091 4.091 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.054 0.946 29 H 0.279 0.721 30 H 0.122 0.878 31 H 0.150 0.850 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.148 0.852 35 H 0.080 0.920 36 H 0.142 0.858 37 H 0.119 0.881 38 H 0.144 0.856 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.353 -17.910 3.537 23.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.159 5.159 3 C -0.484 4.484 4 H 0.087 0.913 5 C -0.197 4.197 6 N -0.515 5.515 7 Si 0.812 3.188 8 H -0.189 1.189 9 H -0.190 1.190 10 H -0.201 1.201 11 C 0.265 3.735 12 O -0.520 6.520 13 C -0.119 4.119 14 C -0.100 4.100 15 C -0.131 4.131 16 C 0.044 3.956 17 N -0.290 5.290 18 C -0.050 4.050 19 C -0.031 4.031 20 O -0.297 6.297 21 C -0.016 4.016 22 C 0.270 3.730 23 O -0.454 6.454 24 C -0.124 4.124 25 C -0.110 4.110 26 H 0.085 0.915 27 H 0.108 0.892 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.140 0.860 31 H 0.167 0.833 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.166 0.834 35 H 0.098 0.902 36 H 0.159 0.841 37 H 0.136 0.864 38 H 0.162 0.838 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.615 -17.854 3.184 22.678 hybrid contribution 0.746 1.420 -0.279 1.628 sum -12.869 -16.434 2.905 21.075 Atomic orbital electron populations 1.22179 0.79884 1.04996 0.99942 1.43614 1.06620 1.04141 1.61507 1.19508 1.06621 0.87645 1.34626 0.91326 1.26174 0.96830 1.03642 0.93032 1.69955 1.29692 1.33041 1.18812 0.85068 0.78440 0.76292 0.78973 1.18876 1.18992 1.20148 1.18942 0.86747 0.85163 0.82656 1.90562 1.16861 1.88008 1.56536 1.20169 0.96691 0.94697 1.00376 1.21025 0.99389 0.92622 0.96972 1.21190 0.93641 0.96893 1.01393 1.17714 0.92543 0.86996 0.98339 1.45151 1.52013 1.14741 1.17059 1.22638 0.97007 1.02048 0.83337 1.23271 0.93424 0.84729 1.01649 1.88205 1.80508 1.37752 1.23190 1.22879 1.00716 0.92583 0.85408 1.22029 0.81297 0.87297 0.82390 1.90795 1.45067 1.78934 1.30629 1.21212 1.00725 0.92038 0.98475 1.21501 0.93030 0.97774 0.98719 0.91515 0.89153 0.92780 0.91069 0.86037 0.83274 0.89500 0.87802 0.83432 0.90172 0.84050 0.86388 0.83815 0.84095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 3.22 8.47 127.77 1.08 4.30 16 2 N -0.44 -23.98 2.95 -662.58 -1.96 -25.93 16 3 C -0.36 -20.82 9.06 84.09 0.76 -20.06 16 4 H 0.07 4.30 7.60 -2.91 -0.02 4.27 16 5 C 0.01 0.37 4.93 84.95 0.42 0.79 16 6 N -0.88 -46.46 11.26 21.68 0.24 -46.22 16 7 Si 0.99 41.81 29.61 68.60 2.03 43.84 16 8 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 9 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 11 C 0.47 25.80 7.21 86.68 0.63 26.42 16 12 O -0.63 -39.44 16.77 -4.12 -0.07 -39.51 16 13 C -0.12 -5.02 5.18 -20.08 -0.10 -5.12 16 14 C -0.08 -3.08 9.67 22.51 0.22 -2.86 16 15 C -0.11 -3.40 9.88 22.35 0.22 -3.18 16 16 C 0.13 3.83 4.43 38.37 0.17 4.00 16 17 N -0.56 -12.06 2.86 -633.84 -1.81 -13.87 16 18 C 0.07 0.88 6.58 86.47 0.57 1.44 16 19 C 0.05 0.34 6.89 71.99 0.50 0.84 16 20 O -0.38 -4.78 10.85 -148.98 -1.62 -6.40 16 21 C 0.06 0.86 6.99 71.13 0.50 1.36 16 22 C 0.48 11.14 7.47 87.69 0.66 11.79 16 23 O -0.58 -19.12 16.61 -3.03 -0.05 -19.17 16 24 C -0.11 -3.14 9.53 22.35 0.21 -2.93 16 25 C -0.09 -3.24 7.55 22.51 0.17 -3.07 16 26 H 0.07 2.68 5.82 -2.39 -0.01 2.66 16 27 H 0.09 4.31 5.27 -2.39 -0.01 4.30 16 28 H 0.05 2.08 7.03 -2.39 -0.02 2.07 16 29 H 0.28 13.59 8.31 -92.71 -0.77 12.82 16 30 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 31 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.10 1.08 8.11 -2.39 -0.02 1.06 16 34 H 0.15 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.08 0.42 8.10 -2.39 -0.02 0.40 16 36 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 39 H 0.14 4.76 5.61 -2.91 -0.02 4.74 16 Total: -1.00 -80.12 328.67 3.85 -76.27 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 1.08 Total: 17.28 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 5.99 Total: 13.72 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -3.52 Total: -86.03 kcal Atomic # 8 Polarization: -63.35 SS G_CDS: -1.74 Total: -65.09 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -80.12 3.85 -76.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196266675.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.576 kcal (2) G-P(sol) polarization free energy of solvation -80.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds