Wall clock time and date at job start Fri Apr 10 2020 17:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99941 * 2 1 4 4 H 1.48491 * 109.46908 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46550 * 299.99364 * 3 2 1 6 6 H 1.48493 * 109.46952 * 59.99292 * 3 2 1 7 7 C 1.37875 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99983 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00180 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.46919 * 179.97438 * 9 7 2 11 11 O 1.21280 * 120.00074 * 0.02562 * 10 9 7 12 12 N 1.34775 * 119.99700 * 179.97438 * 10 9 7 13 13 C 1.48113 * 127.04660 * 0.02562 * 12 10 9 14 14 C 1.54940 * 103.26031 * 140.77111 * 13 12 10 15 15 C 1.54579 * 102.85859 * 37.43270 * 14 13 12 16 16 H 1.09003 * 117.26959 * 116.74351 * 15 14 13 17 17 C 1.55078 * 118.28104 * 275.08987 * 15 14 13 18 18 C 1.47532 * 127.04413 * 180.02562 * 12 10 9 19 19 C 1.50706 * 117.36678 * 64.93816 * 18 12 10 20 20 O 1.21304 * 119.99634 * 159.70970 * 19 18 12 21 21 N 1.34775 * 120.00111 * 339.71104 * 19 18 12 22 22 C 1.40765 * 119.99618 * 180.02562 * 21 19 18 23 23 C 1.40253 * 126.08430 * 0.02562 * 22 21 19 24 24 N 1.30822 * 108.33501 * 179.97438 * 23 22 21 25 25 N 1.40067 * 108.37232 * 0.02562 * 24 23 22 26 26 H 0.97004 * 126.05592 * 179.97438 * 25 24 23 27 27 C 1.35753 * 126.07591 * 179.71454 * 22 21 19 28 28 H 0.96999 * 120.00384 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.46876 * 59.99783 * 9 7 2 30 30 H 1.08999 * 109.46917 * 299.99974 * 9 7 2 31 31 H 1.08994 * 110.66540 * 259.21683 * 13 12 10 32 32 H 1.09005 * 110.66125 * 22.16472 * 13 12 10 33 33 H 1.09001 * 110.73626 * 155.77465 * 14 13 12 34 34 H 1.08996 * 110.73928 * 278.91240 * 14 13 12 35 35 H 1.08996 * 117.30720 * 343.81432 * 17 15 14 36 36 H 1.09003 * 117.87705 * 198.58085 * 17 15 14 37 37 H 0.96994 * 120.00190 * 359.97438 * 21 19 18 38 38 H 1.08003 * 125.82844 * 359.97085 * 23 22 21 39 39 H 1.08001 * 126.22039 * 0.03038 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 8 3.4227 -3.4229 0.0010 12 7 1.7811 -4.9153 0.0011 13 6 0.3691 -5.3625 0.0011 14 6 0.3831 -6.5839 -0.9521 15 6 1.7357 -7.2581 -0.6274 16 1 1.7046 -8.2645 -0.2099 17 6 3.0071 -6.7389 -1.3478 18 6 2.5951 -6.1457 0.0017 19 6 3.4500 -6.4102 1.2142 20 8 3.8416 -7.5345 1.4466 21 7 3.7795 -5.3976 2.0404 22 6 4.5785 -5.6447 3.1726 23 6 5.0993 -6.8877 3.5609 24 7 5.7887 -6.7199 4.6600 25 7 5.7330 -5.3658 5.0136 26 1 6.1559 -4.9597 5.7865 27 6 4.9869 -4.7210 4.0798 28 1 -0.4851 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 0.0599 -5.6601 1.0030 32 1 -0.2827 -4.5783 -0.3841 33 1 -0.4460 -7.2559 -0.7305 34 1 0.3494 -6.2617 -1.9928 35 1 2.8626 -6.1207 -2.2338 36 1 3.8835 -7.3869 -1.3653 37 1 3.4666 -4.4985 1.8543 38 1 4.9556 -7.8235 3.0412 39 1 4.7576 -3.6657 4.0636 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269024427.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:34 Heat of formation + Delta-G solvation = 49.202696 kcal Electronic energy + Delta-G solvation = -25084.454757 eV Core-core repulsion = 21416.239990 eV Total energy + Delta-G solvation = -3668.214766 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.35688 -40.58196 -38.55720 -37.53156 -34.56394 -33.17663 -32.69170 -31.25493 -30.42746 -29.12408 -28.67951 -24.72715 -23.58815 -23.34825 -22.27532 -21.46541 -20.39504 -20.02008 -18.92243 -17.94310 -17.06701 -16.41709 -15.93253 -15.63619 -15.36649 -15.06135 -14.79780 -14.33441 -14.30988 -14.09305 -13.97835 -13.48663 -13.21228 -12.88422 -12.74407 -12.48405 -12.18929 -11.81649 -11.37788 -11.14757 -10.90259 -10.87853 -10.81227 -10.76906 -10.65156 -10.34976 -10.07476 -9.72714 -9.58997 -9.36980 -8.91601 -8.56412 -8.37282 -7.71414 -6.17984 -4.18592 1.74626 2.32851 2.72522 3.05902 3.12333 3.24981 3.27762 3.33343 3.38092 3.41566 3.69822 4.37330 4.50670 4.53670 4.74140 4.93334 5.03087 5.08974 5.13078 5.20690 5.28910 5.53032 5.57983 5.62666 5.70284 5.73197 5.81471 5.85997 5.93205 6.20666 6.22546 6.53660 6.90371 7.02717 7.14899 7.23860 7.49754 7.72020 7.82133 7.84711 8.17872 8.26167 8.88510 8.94037 9.47335 10.94099 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.005239 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.953586 B = 5342.818401 C = 7255.962830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.077 0.923 9 C 0.013 3.987 10 C 0.529 3.471 11 O -0.533 6.533 12 N -0.607 5.607 13 C 0.105 3.895 14 C -0.109 4.109 15 C -0.123 4.123 16 H 0.131 0.869 17 C -0.117 4.117 18 C 0.045 3.955 19 C 0.563 3.437 20 O -0.540 6.540 21 N -0.628 5.628 22 C 0.006 3.994 23 C 0.053 3.947 24 N -0.290 5.290 25 N -0.477 5.477 26 H 0.442 0.558 27 C 0.024 3.976 28 H 0.262 0.738 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.420 0.580 38 H 0.206 0.794 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 -12.540 2.978 12.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.095 0.905 9 C -0.026 4.026 10 C 0.323 3.677 11 O -0.408 6.408 12 N -0.345 5.345 13 C -0.018 4.018 14 C -0.147 4.147 15 C -0.142 4.142 16 H 0.148 0.852 17 C -0.155 4.155 18 C -0.045 4.045 19 C 0.350 3.650 20 O -0.417 6.417 21 N -0.275 5.275 22 C -0.098 4.098 23 C -0.134 4.134 24 N -0.114 5.114 25 N -0.188 5.188 26 H 0.287 0.713 27 C -0.125 4.125 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.261 0.739 38 H 0.222 0.778 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.974 -13.464 3.997 14.356 hybrid contribution -0.158 2.194 -0.319 2.223 sum 2.815 -11.270 3.678 12.184 Atomic orbital electron populations 1.69953 1.06046 1.27000 1.50730 1.24989 0.94893 0.99487 0.95010 0.86388 0.80306 0.82958 0.77575 1.19469 1.20932 1.20982 1.21176 0.94277 0.88894 1.50682 0.90531 1.19264 0.93931 0.89762 0.99689 1.22171 0.91230 0.81552 0.72729 1.90578 1.17776 1.83323 1.49154 1.49020 1.06259 1.03254 1.76015 1.22674 0.83018 0.96594 0.99499 1.22471 0.95158 0.96445 1.00624 1.24072 0.90808 0.97093 1.02250 0.85154 1.23747 0.97505 1.00747 0.93538 1.21473 1.01026 0.88099 0.93942 1.19406 0.79478 0.83904 0.82213 1.90545 1.55293 1.22445 1.73445 1.43037 1.49099 1.13107 1.22284 1.17875 1.04596 0.94160 0.93207 1.24487 0.95943 0.99257 0.93747 1.77289 1.23382 0.94261 1.16461 1.46012 1.43158 1.06337 1.23333 0.71333 1.22100 0.99480 0.98839 0.92096 0.92819 0.93173 0.93237 0.91080 0.88544 0.89349 0.90033 0.87513 0.86941 0.73926 0.77809 0.80046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.85 13.29 55.43 0.74 -24.12 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -13.76 8.92 -34.44 -0.31 -14.07 16 8 H 0.08 2.15 6.75 -52.49 -0.35 1.79 16 9 C 0.01 0.29 4.39 -29.03 -0.13 0.16 16 10 C 0.53 10.96 6.76 -10.98 -0.07 10.88 16 11 O -0.53 -12.42 14.17 5.56 0.08 -12.34 16 12 N -0.61 -9.96 3.02 -156.28 -0.47 -10.44 16 13 C 0.10 1.34 6.95 -2.13 -0.01 1.32 16 14 C -0.11 -1.10 6.88 -24.88 -0.17 -1.27 16 15 C -0.12 -1.42 6.85 -88.17 -0.60 -2.03 16 16 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 17 C -0.12 -1.51 10.10 -25.60 -0.26 -1.77 16 18 C 0.04 0.68 2.43 -131.85 -0.32 0.36 16 19 C 0.56 9.53 7.62 -10.98 -0.08 9.44 16 20 O -0.54 -9.40 14.02 5.54 0.08 -9.32 16 21 N -0.63 -10.77 5.36 -10.03 -0.05 -10.82 16 22 C 0.01 0.10 6.90 -83.88 -0.58 -0.48 16 23 C 0.05 0.85 10.84 -17.22 -0.19 0.66 16 24 N -0.29 -4.33 12.69 30.70 0.39 -3.94 16 25 N -0.48 -5.73 7.40 30.69 0.23 -5.51 16 26 H 0.44 3.59 8.96 -182.62 -1.64 1.96 16 27 C 0.02 0.31 12.05 -16.68 -0.20 0.11 16 28 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.05 1.19 7.91 -51.93 -0.41 0.78 16 30 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.10 1.24 7.23 -51.93 -0.38 0.87 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.42 7.67 5.51 -40.82 -0.23 7.44 16 38 H 0.21 3.26 5.92 -52.48 -0.31 2.95 16 39 H 0.18 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 332.59 15.07 5.01 5.01 Total: -1.00 -32.48 332.59 -7.88 -40.36 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.83 Total: 10.35 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -3.02 Total: 4.80 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.83 Total: -54.82 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: 0.16 Total: -21.66 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.48 -7.88 -40.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024427.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.559 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds