Wall clock time and date at job start Fri Apr 10 2020 17:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99941 * 2 1 4 4 H 1.48491 * 109.46908 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46550 * 299.99364 * 3 2 1 6 6 H 1.48493 * 109.46952 * 59.99292 * 3 2 1 7 7 C 1.37875 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99983 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00180 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.46919 * 179.97438 * 9 7 2 11 11 O 1.21280 * 120.00074 * 0.02562 * 10 9 7 12 12 N 1.34775 * 119.99700 * 179.97438 * 10 9 7 13 13 C 1.48113 * 127.04660 * 0.02562 * 12 10 9 14 14 C 1.54940 * 103.26031 * 140.77111 * 13 12 10 15 15 C 1.54579 * 102.85859 * 37.43270 * 14 13 12 16 16 H 1.09003 * 117.26959 * 116.74351 * 15 14 13 17 17 C 1.55078 * 118.28104 * 275.08987 * 15 14 13 18 18 C 1.47532 * 127.04413 * 180.02562 * 12 10 9 19 19 C 1.50706 * 117.36678 * 64.93816 * 18 12 10 20 20 O 1.21304 * 119.99634 * 159.70970 * 19 18 12 21 21 N 1.34775 * 120.00111 * 339.71104 * 19 18 12 22 22 C 1.40765 * 119.99618 * 180.02562 * 21 19 18 23 23 C 1.40253 * 126.08430 * 0.02562 * 22 21 19 24 24 N 1.30822 * 108.33501 * 179.97438 * 23 22 21 25 25 N 1.40067 * 108.37232 * 0.02562 * 24 23 22 26 26 H 0.97004 * 126.05592 * 179.97438 * 25 24 23 27 27 C 1.35753 * 126.07591 * 179.71454 * 22 21 19 28 28 H 0.96999 * 120.00384 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.46876 * 59.99783 * 9 7 2 30 30 H 1.08999 * 109.46917 * 299.99974 * 9 7 2 31 31 H 1.08994 * 110.66540 * 259.21683 * 13 12 10 32 32 H 1.09005 * 110.66125 * 22.16472 * 13 12 10 33 33 H 1.09001 * 110.73626 * 155.77465 * 14 13 12 34 34 H 1.08996 * 110.73928 * 278.91240 * 14 13 12 35 35 H 1.08996 * 117.30720 * 343.81432 * 17 15 14 36 36 H 1.09003 * 117.87705 * 198.58085 * 17 15 14 37 37 H 0.96994 * 120.00190 * 359.97438 * 21 19 18 38 38 H 1.08003 * 125.82844 * 359.97085 * 23 22 21 39 39 H 1.08001 * 126.22039 * 0.03038 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 8 3.4227 -3.4229 0.0010 12 7 1.7811 -4.9153 0.0011 13 6 0.3691 -5.3625 0.0011 14 6 0.3831 -6.5839 -0.9521 15 6 1.7357 -7.2581 -0.6274 16 1 1.7046 -8.2645 -0.2099 17 6 3.0071 -6.7389 -1.3478 18 6 2.5951 -6.1457 0.0017 19 6 3.4500 -6.4102 1.2142 20 8 3.8416 -7.5345 1.4466 21 7 3.7795 -5.3976 2.0404 22 6 4.5785 -5.6447 3.1726 23 6 5.0993 -6.8877 3.5609 24 7 5.7887 -6.7199 4.6600 25 7 5.7330 -5.3658 5.0136 26 1 6.1559 -4.9597 5.7865 27 6 4.9869 -4.7210 4.0798 28 1 -0.4851 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 0.0599 -5.6601 1.0030 32 1 -0.2827 -4.5783 -0.3841 33 1 -0.4460 -7.2559 -0.7305 34 1 0.3494 -6.2617 -1.9928 35 1 2.8626 -6.1207 -2.2338 36 1 3.8835 -7.3869 -1.3653 37 1 3.4666 -4.4985 1.8543 38 1 4.9556 -7.8235 3.0412 39 1 4.7576 -3.6657 4.0636 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269024427.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:33 Heat of formation + Delta-G solvation = 26.590136 kcal Electronic energy + Delta-G solvation = -25085.435311 eV Core-core repulsion = 21416.239990 eV Total energy + Delta-G solvation = -3669.195321 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.52183 -41.76550 -39.93224 -38.90106 -35.81903 -35.11346 -34.04581 -32.37711 -31.50807 -30.86134 -29.95961 -26.30907 -24.99887 -24.54459 -23.43432 -22.67292 -21.54724 -21.18031 -20.18727 -19.09140 -18.66071 -18.17981 -17.18274 -17.10386 -16.66641 -16.29686 -16.27456 -15.78063 -15.73171 -15.29008 -15.25245 -14.81548 -14.31712 -14.14090 -14.04704 -13.90238 -13.58303 -13.21313 -12.90334 -12.71996 -12.59498 -12.15754 -12.04890 -12.02403 -11.99768 -11.70901 -11.53749 -11.34583 -10.86219 -10.69981 -10.61172 -10.54550 -9.68023 -8.89960 -8.23831 -6.30363 0.62616 1.11910 1.40525 1.43153 1.55710 1.65914 1.73458 1.84433 1.90642 2.19408 2.43640 2.58333 3.12524 3.44625 3.50817 3.60501 3.85169 3.93453 3.97317 4.18497 4.29329 4.37638 4.40424 4.56256 4.59094 4.72901 4.78067 4.89887 5.00650 5.04996 5.09384 5.25779 5.26484 5.39863 5.69052 5.75840 6.05263 6.24972 6.29790 6.53885 6.58426 6.83400 6.98498 7.30706 7.41231 8.88150 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.005239 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.953586 B = 5342.818401 C = 7255.962830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.015 3.985 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.020 3.980 10 C 0.534 3.466 11 O -0.567 6.567 12 N -0.599 5.599 13 C 0.094 3.906 14 C -0.098 4.098 15 C -0.088 4.088 16 H 0.149 0.851 17 C -0.116 4.116 18 C 0.010 3.990 19 C 0.555 3.445 20 O -0.552 6.552 21 N -0.634 5.634 22 C -0.030 4.030 23 C 0.043 3.957 24 N -0.303 5.303 25 N -0.456 5.456 26 H 0.460 0.540 27 C 0.040 3.960 28 H 0.266 0.734 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.118 0.882 37 H 0.414 0.586 38 H 0.198 0.802 39 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.994 -13.060 3.084 13.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.184 4.184 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.077 0.923 9 C -0.019 4.019 10 C 0.327 3.673 11 O -0.446 6.446 12 N -0.335 5.335 13 C -0.027 4.027 14 C -0.136 4.136 15 C -0.107 4.107 16 H 0.167 0.833 17 C -0.155 4.155 18 C -0.079 4.079 19 C 0.342 3.658 20 O -0.431 6.431 21 N -0.279 5.279 22 C -0.134 4.134 23 C -0.144 4.144 24 N -0.127 5.127 25 N -0.170 5.170 26 H 0.309 0.691 27 C -0.110 4.110 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.144 0.856 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.137 0.863 37 H 0.252 0.748 38 H 0.215 0.785 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 2.441 -14.029 4.130 14.826 hybrid contribution 0.004 2.331 -0.298 2.350 sum 2.445 -11.697 3.832 12.550 Atomic orbital electron populations 1.70022 1.07038 1.27942 1.51199 1.25688 0.95708 1.02409 0.94602 0.85486 0.78756 0.79336 0.78011 1.19897 1.20229 1.19970 1.21371 0.93747 0.90882 1.50978 0.92336 1.19021 0.93953 0.90039 0.98895 1.21474 0.90047 0.82655 0.73140 1.90551 1.18680 1.84292 1.51063 1.48762 1.08240 1.02475 1.74045 1.22993 0.80760 0.97753 1.01205 1.22525 0.95401 0.95467 1.00182 1.24314 0.90653 0.96639 0.99112 0.83341 1.23837 0.98931 1.00563 0.92158 1.21712 1.03114 0.88565 0.94548 1.19734 0.79642 0.83785 0.82595 1.90527 1.56040 1.22644 1.73860 1.43084 1.49340 1.12710 1.22802 1.18196 1.06145 0.95032 0.94075 1.24389 0.96580 0.99210 0.94219 1.77237 1.23568 0.95645 1.16298 1.46065 1.42068 1.05424 1.23393 0.69137 1.22485 0.97939 0.99534 0.91057 0.92469 0.93955 0.93867 0.89781 0.88908 0.85628 0.89387 0.87525 0.86344 0.74774 0.78537 0.77657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.11 13.29 21.45 0.28 -50.83 16 2 C 0.01 0.81 5.46 84.65 0.46 1.27 16 3 Si 0.96 43.07 29.54 68.60 2.03 45.10 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.53 -29.13 8.92 25.60 0.23 -28.90 16 8 H 0.06 3.37 6.75 -2.91 -0.02 3.35 16 9 C 0.02 0.96 4.39 29.10 0.13 1.09 16 10 C 0.53 22.51 6.76 87.66 0.59 23.11 16 11 O -0.57 -27.18 14.17 -3.03 -0.04 -27.22 16 12 N -0.60 -19.43 3.02 -766.75 -2.32 -21.75 16 13 C 0.09 2.24 6.95 86.73 0.60 2.85 16 14 C -0.10 -1.64 6.88 31.79 0.22 -1.42 16 15 C -0.09 -1.80 6.85 -9.21 -0.06 -1.86 16 16 H 0.15 2.58 8.14 -2.39 -0.02 2.56 16 17 C -0.12 -2.86 10.10 31.33 0.32 -2.54 16 18 C 0.01 0.31 2.43 3.02 0.01 0.31 16 19 C 0.55 18.77 7.62 87.66 0.67 19.44 16 20 O -0.55 -19.20 14.02 -3.10 -0.04 -19.24 16 21 N -0.63 -22.01 5.36 -304.04 -1.63 -23.64 16 22 C -0.03 -0.97 6.90 37.62 0.26 -0.71 16 23 C 0.04 1.37 10.84 85.33 0.92 2.30 16 24 N -0.30 -8.85 12.69 -56.77 -0.72 -9.57 16 25 N -0.46 -10.30 7.40 -56.81 -0.42 -10.72 16 26 H 0.46 6.53 8.96 -213.34 -1.91 4.62 16 27 C 0.04 1.02 12.05 83.50 1.01 2.03 16 28 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 29 H 0.04 2.05 7.91 -2.39 -0.02 2.04 16 30 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.09 2.30 7.23 -2.38 -0.02 2.28 16 33 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.41 15.43 5.51 -92.71 -0.51 14.92 16 38 H 0.20 6.45 5.92 -2.91 -0.02 6.44 16 39 H 0.21 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -70.95 332.59 1.18 -69.77 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: -1.31 Total: 31.15 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 5.35 Total: 16.95 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -4.80 Total: -116.51 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -0.09 Total: -46.46 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -70.95 1.18 -69.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024427.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.356 kcal (2) G-P(sol) polarization free energy of solvation -70.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds