Wall clock time and date at job start Fri Apr 10 2020 17:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99786 * 2 1 4 4 H 1.48498 * 109.46960 * 270.00211 * 3 2 1 5 5 H 1.48505 * 109.46969 * 30.00364 * 3 2 1 6 6 H 1.48497 * 109.47179 * 150.00139 * 3 2 1 7 7 C 1.37869 * 120.00334 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99911 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99828 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47215 * 180.02562 * 9 7 2 11 11 C 1.48218 * 111.00007 * 190.00359 * 10 9 7 12 12 C 1.52670 * 85.71163 * 223.27536 * 11 10 9 13 13 C 1.48218 * 110.99854 * 90.27667 * 10 9 7 14 14 C 1.52236 * 122.20243 * 150.22696 * 12 11 10 15 15 N 1.47317 * 87.61168 * 150.21218 * 14 12 11 16 16 C 1.34784 * 135.87282 * 153.97975 * 15 14 12 17 17 O 1.21538 * 119.99953 * 359.72803 * 16 15 14 18 18 C 1.47929 * 119.99886 * 179.97438 * 16 15 14 19 19 C 1.39981 * 120.11782 * 179.97438 * 18 16 15 20 20 C 1.38415 * 117.96758 * 180.02562 * 19 18 16 21 21 C 1.39346 * 118.04251 * 359.97438 * 20 19 18 22 22 O 1.35517 * 120.03320 * 180.02562 * 21 20 19 23 23 N 1.32684 * 119.93899 * 0.02562 * 21 20 19 24 24 N 1.28353 * 122.19586 * 359.70227 * 23 21 20 25 25 C 1.47314 * 88.25314 * 334.23617 * 15 14 12 26 26 H 0.97005 * 119.99979 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47299 * 60.00450 * 9 7 2 28 28 H 1.08997 * 109.47463 * 300.00397 * 9 7 2 29 29 H 1.08996 * 113.83443 * 109.07699 * 11 10 9 30 30 H 1.09005 * 113.94686 * 337.47708 * 11 10 9 31 31 H 1.08998 * 113.83458 * 22.53299 * 13 10 9 32 32 H 1.08999 * 113.84102 * 250.92383 * 13 10 9 33 33 H 1.09004 * 113.53476 * 35.52754 * 14 12 11 34 34 H 1.09006 * 113.59309 * 264.90491 * 14 12 11 35 35 H 1.07998 * 121.01271 * 359.97438 * 19 18 16 36 36 H 1.08003 * 120.97726 * 180.02562 * 20 19 18 37 37 H 0.96693 * 113.99886 * 90.00336 * 22 21 20 38 38 H 1.09000 * 113.52541 * 140.44396 * 25 15 14 39 39 H 1.09000 * 113.53003 * 271.07925 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5152 -4.9049 -0.2409 12 6 2.4004 -5.4557 0.8744 13 6 2.5459 -4.0237 1.3832 14 6 1.9518 -6.5960 1.7778 15 7 3.3701 -6.9754 1.8996 16 6 4.1241 -7.6205 2.8118 17 8 3.6167 -8.0369 3.8347 18 6 5.5703 -7.8168 2.5704 19 6 6.3558 -8.4858 3.5163 20 6 7.7040 -8.6442 3.2453 21 6 8.1965 -8.1288 2.0480 22 8 9.5099 -8.2617 1.7418 23 7 7.3783 -7.5079 1.2081 24 7 6.1268 -7.3636 1.4536 25 6 3.6064 -6.3371 0.5932 26 1 -0.4850 0.8401 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6248 -2.5570 0.8896 29 1 1.7195 -5.3382 -1.2200 30 1 0.4535 -4.8909 0.0059 31 1 1.7966 -3.7408 2.1226 32 1 3.5612 -3.7635 1.6823 33 1 1.3439 -7.3428 1.2669 34 1 1.5089 -6.2611 2.7158 35 1 5.9234 -8.8661 4.4300 36 1 8.3548 -9.1530 3.9411 37 1 9.7198 -9.0684 1.2517 38 1 4.5448 -5.7848 0.5422 39 1 3.4655 -7.0106 -0.2521 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277936912.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:43 Heat of formation + Delta-G solvation = 76.682540 kcal Electronic energy + Delta-G solvation = -23957.094223 eV Core-core repulsion = 20290.071072 eV Total energy + Delta-G solvation = -3667.023151 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.71657 -40.89171 -38.94930 -37.94917 -36.53236 -33.65772 -32.83620 -32.19595 -29.85201 -27.62726 -26.15201 -25.71223 -25.53381 -24.77454 -23.86368 -21.11492 -20.17373 -19.61641 -18.27523 -18.03761 -17.58215 -16.63073 -16.38436 -16.11949 -15.98954 -15.09350 -14.91935 -14.69198 -14.51720 -14.26939 -13.95145 -13.74438 -13.15815 -13.07909 -12.77801 -12.49626 -12.25167 -12.07365 -11.77462 -11.55269 -10.99194 -10.82838 -10.70430 -10.51901 -10.39204 -10.30082 -10.19430 -10.07627 -9.95266 -9.65335 -9.22044 -8.76974 -8.41865 -7.77316 -6.02185 -4.03162 -0.06633 0.25713 2.25503 2.48955 2.86517 3.22991 3.34059 3.39721 3.44428 3.56437 3.97959 4.16158 4.26996 4.39702 4.45274 4.47207 4.62384 4.89544 5.00695 5.03650 5.25241 5.33421 5.36865 5.44135 5.58148 5.64035 5.88408 5.90710 5.98578 6.00937 6.20465 6.28587 6.48797 6.64833 6.76750 7.19419 7.50973 7.67600 7.78486 7.87740 8.11343 8.11979 8.46789 9.04741 9.61229 11.08774 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.003078 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.524903 B = 9094.367979 C =10041.431929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.160 3.840 10 N -0.471 5.471 11 C 0.022 3.978 12 C -0.135 4.135 13 C 0.046 3.954 14 C 0.117 3.883 15 N -0.621 5.621 16 C 0.602 3.398 17 O -0.535 6.535 18 C 0.021 3.979 19 C -0.049 4.049 20 C -0.141 4.141 21 C 0.272 3.728 22 O -0.472 6.472 23 N -0.254 5.254 24 N -0.172 5.172 25 C 0.139 3.861 26 H 0.261 0.739 27 H 0.030 0.970 28 H 0.002 0.998 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.409 0.591 38 H 0.098 0.902 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.487 -21.788 4.863 25.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.542 4.542 8 H 0.081 0.919 9 C 0.034 3.966 10 N -0.194 5.194 11 C -0.108 4.108 12 C -0.136 4.136 13 C -0.083 4.083 14 C -0.005 4.005 15 N -0.353 5.353 16 C 0.388 3.612 17 O -0.412 6.412 18 C -0.125 4.125 19 C -0.078 4.078 20 C -0.171 4.171 21 C 0.088 3.912 22 O -0.278 6.278 23 N -0.107 5.107 24 N -0.022 5.022 25 C 0.017 3.983 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.020 0.980 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.185 0.815 36 H 0.181 0.819 37 H 0.269 0.731 38 H 0.116 0.884 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.657 -20.474 3.992 24.399 hybrid contribution 0.008 -0.388 1.619 1.665 sum 12.665 -20.862 5.611 25.042 Atomic orbital electron populations 1.69954 1.06057 1.26778 1.51276 1.24998 0.94875 0.99368 0.95464 0.86493 0.79740 0.83023 0.78147 1.20603 1.21351 1.19838 1.21115 0.93619 0.89806 1.49704 0.91863 1.20250 0.90682 0.89100 0.96593 1.68654 1.33068 1.01653 1.15991 1.23569 0.96533 0.93296 0.97403 1.23207 0.97756 0.94438 0.98241 1.23444 1.02171 0.89189 0.93501 1.23011 0.82418 0.94988 1.00109 1.49454 1.11532 1.53824 1.20525 1.16831 0.83630 0.77830 0.82886 1.90814 1.72721 1.50996 1.26675 1.22867 0.96716 0.99025 0.93931 1.22414 0.92590 0.93012 0.99760 1.22571 0.95986 1.00092 0.98457 1.21089 0.85905 0.93015 0.91208 1.84748 1.17190 1.48242 1.77610 1.73174 0.97860 1.12647 1.27029 1.73463 1.02628 1.10718 1.15354 1.22693 0.99514 0.92211 0.83860 0.92948 0.95225 0.98015 0.89732 0.91274 0.91117 0.90136 0.89050 0.89902 0.81504 0.81892 0.73132 0.88398 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 2 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 21.90 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.50 -14.28 9.36 -34.44 -0.32 -14.60 16 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.16 4.07 4.56 -4.97 -0.02 4.05 16 10 N -0.47 -9.77 6.14 -246.97 -1.52 -11.29 16 11 C 0.02 0.35 7.78 -3.27 -0.03 0.32 16 12 C -0.14 -1.92 1.46 -156.00 -0.23 -2.15 16 13 C 0.05 0.83 7.77 -3.27 -0.03 0.81 16 14 C 0.12 1.46 8.44 -7.53 -0.06 1.40 16 15 N -0.62 -8.36 3.70 -186.34 -0.69 -9.05 16 16 C 0.60 8.44 8.06 -12.29 -0.10 8.35 16 17 O -0.54 -8.60 17.16 5.33 0.09 -8.51 16 18 C 0.02 0.26 6.83 -82.85 -0.57 -0.31 16 19 C -0.05 -0.43 9.72 -38.86 -0.38 -0.81 16 20 C -0.14 -0.98 10.14 -39.10 -0.40 -1.37 16 21 C 0.27 2.46 7.85 -16.77 -0.13 2.33 16 22 O -0.47 -3.23 13.56 -18.24 -0.25 -3.47 16 23 N -0.25 -3.11 11.54 30.55 0.35 -2.76 16 24 N -0.17 -2.23 9.25 33.32 0.31 -1.93 16 25 C 0.14 1.80 7.26 -7.65 -0.06 1.74 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.03 0.80 8.08 -51.93 -0.42 0.39 16 28 H 0.00 0.05 7.39 -51.93 -0.38 -0.33 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.08 7.93 -51.93 -0.41 0.67 16 31 H 0.07 1.32 7.48 -51.93 -0.39 0.93 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.17 1.20 7.71 -52.49 -0.40 0.79 16 36 H 0.16 0.55 8.06 -52.48 -0.42 0.13 16 37 H 0.41 0.53 9.06 45.56 0.41 0.94 16 38 H 0.10 1.39 7.24 -51.93 -0.38 1.02 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 339.95 15.07 5.12 5.12 Total: -1.00 -35.04 339.95 -7.33 -42.37 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -4.05 Total: -2.53 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -2.41 Total: 1.19 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.81 Total: -51.05 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -0.16 Total: -11.98 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.04 -7.33 -42.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936912.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.049 kcal (2) G-P(sol) polarization free energy of solvation -35.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds