Wall clock time and date at job start Fri Apr 10 2020 17:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99786 * 2 1 4 4 H 1.48498 * 109.46960 * 270.00211 * 3 2 1 5 5 H 1.48505 * 109.46969 * 30.00364 * 3 2 1 6 6 H 1.48497 * 109.47179 * 150.00139 * 3 2 1 7 7 C 1.37869 * 120.00334 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99911 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99828 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47215 * 180.02562 * 9 7 2 11 11 C 1.48218 * 111.00007 * 190.00359 * 10 9 7 12 12 C 1.52670 * 85.71163 * 223.27536 * 11 10 9 13 13 C 1.48218 * 110.99854 * 90.27667 * 10 9 7 14 14 C 1.52236 * 122.20243 * 150.22696 * 12 11 10 15 15 N 1.47317 * 87.61168 * 150.21218 * 14 12 11 16 16 C 1.34784 * 135.87282 * 153.97975 * 15 14 12 17 17 O 1.21538 * 119.99953 * 359.72803 * 16 15 14 18 18 C 1.47929 * 119.99886 * 179.97438 * 16 15 14 19 19 C 1.39981 * 120.11782 * 179.97438 * 18 16 15 20 20 C 1.38415 * 117.96758 * 180.02562 * 19 18 16 21 21 C 1.39346 * 118.04251 * 359.97438 * 20 19 18 22 22 O 1.35517 * 120.03320 * 180.02562 * 21 20 19 23 23 N 1.32684 * 119.93899 * 0.02562 * 21 20 19 24 24 N 1.28353 * 122.19586 * 359.70227 * 23 21 20 25 25 C 1.47314 * 88.25314 * 334.23617 * 15 14 12 26 26 H 0.97005 * 119.99979 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47299 * 60.00450 * 9 7 2 28 28 H 1.08997 * 109.47463 * 300.00397 * 9 7 2 29 29 H 1.08996 * 113.83443 * 109.07699 * 11 10 9 30 30 H 1.09005 * 113.94686 * 337.47708 * 11 10 9 31 31 H 1.08998 * 113.83458 * 22.53299 * 13 10 9 32 32 H 1.08999 * 113.84102 * 250.92383 * 13 10 9 33 33 H 1.09004 * 113.53476 * 35.52754 * 14 12 11 34 34 H 1.09006 * 113.59309 * 264.90491 * 14 12 11 35 35 H 1.07998 * 121.01271 * 359.97438 * 19 18 16 36 36 H 1.08003 * 120.97726 * 180.02562 * 20 19 18 37 37 H 0.96693 * 113.99886 * 90.00336 * 22 21 20 38 38 H 1.09000 * 113.52541 * 140.44396 * 25 15 14 39 39 H 1.09000 * 113.53003 * 271.07925 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5152 -4.9049 -0.2409 12 6 2.4004 -5.4557 0.8744 13 6 2.5459 -4.0237 1.3832 14 6 1.9518 -6.5960 1.7778 15 7 3.3701 -6.9754 1.8996 16 6 4.1241 -7.6205 2.8118 17 8 3.6167 -8.0369 3.8347 18 6 5.5703 -7.8168 2.5704 19 6 6.3558 -8.4858 3.5163 20 6 7.7040 -8.6442 3.2453 21 6 8.1965 -8.1288 2.0480 22 8 9.5099 -8.2617 1.7418 23 7 7.3783 -7.5079 1.2081 24 7 6.1268 -7.3636 1.4536 25 6 3.6064 -6.3371 0.5932 26 1 -0.4850 0.8401 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6248 -2.5570 0.8896 29 1 1.7195 -5.3382 -1.2200 30 1 0.4535 -4.8909 0.0059 31 1 1.7966 -3.7408 2.1226 32 1 3.5612 -3.7635 1.6823 33 1 1.3439 -7.3428 1.2669 34 1 1.5089 -6.2611 2.7158 35 1 5.9234 -8.8661 4.4300 36 1 8.3548 -9.1530 3.9411 37 1 9.7198 -9.0684 1.2517 38 1 4.5448 -5.7848 0.5422 39 1 3.4655 -7.0106 -0.2521 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277936912.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:42 Heat of formation + Delta-G solvation = 45.384046 kcal Electronic energy + Delta-G solvation = -23958.451427 eV Core-core repulsion = 20290.071072 eV Total energy + Delta-G solvation = -3668.380356 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.57287 -41.99728 -40.05748 -38.60829 -37.85691 -34.93151 -34.36296 -33.04520 -31.33340 -29.17168 -27.21044 -27.14725 -26.51912 -25.84124 -25.18506 -22.69703 -21.33380 -20.21022 -19.28739 -19.09862 -18.59010 -18.37150 -17.37145 -17.20089 -17.02983 -16.79286 -16.08729 -15.83438 -15.75758 -15.38628 -15.01736 -14.77558 -14.47901 -14.26624 -14.07670 -13.63074 -13.45055 -13.26730 -13.16008 -12.96016 -12.87060 -12.39429 -12.31429 -11.85823 -11.72792 -11.50848 -11.47932 -11.30793 -11.03718 -10.93240 -10.67288 -10.59758 -9.87495 -9.44163 -8.21198 -6.30640 -0.80603 -0.40866 1.37407 1.40043 1.41183 1.51912 1.52530 2.18959 2.39743 2.40275 2.75090 3.00655 3.11211 3.27284 3.39613 3.53048 3.55291 3.70259 3.83190 3.87678 4.26792 4.41617 4.50002 4.54452 4.59049 4.63188 4.69550 4.72089 4.79028 4.86289 4.92591 4.96963 5.00298 5.08884 5.18217 5.62067 5.84367 6.12490 6.44487 6.45424 6.50196 6.75763 6.84226 7.34300 7.38852 8.89491 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.003078 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.524903 B = 9094.367979 C =10041.431929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.176 3.824 10 N -0.492 5.492 11 C 0.027 3.973 12 C -0.118 4.118 13 C 0.040 3.960 14 C 0.122 3.878 15 N -0.626 5.626 16 C 0.600 3.400 17 O -0.562 6.562 18 C 0.001 3.999 19 C -0.048 4.048 20 C -0.118 4.118 21 C 0.278 3.722 22 O -0.476 6.476 23 N -0.291 5.291 24 N -0.195 5.195 25 C 0.149 3.851 26 H 0.265 0.735 27 H 0.006 0.994 28 H -0.020 1.020 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.123 0.877 34 H 0.077 0.923 35 H 0.183 0.817 36 H 0.207 0.793 37 H 0.433 0.567 38 H 0.084 0.916 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.269 -23.344 5.201 27.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.563 4.563 8 H 0.073 0.927 9 C 0.049 3.951 10 N -0.214 5.214 11 C -0.102 4.102 12 C -0.120 4.120 13 C -0.089 4.089 14 C 0.001 3.999 15 N -0.358 5.358 16 C 0.388 3.612 17 O -0.441 6.441 18 C -0.146 4.146 19 C -0.077 4.077 20 C -0.147 4.147 21 C 0.093 3.907 22 O -0.286 6.286 23 N -0.145 5.145 24 N -0.044 5.044 25 C 0.027 3.973 26 H 0.074 0.926 27 H 0.024 0.976 28 H -0.003 1.003 29 H 0.125 0.875 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.141 0.859 34 H 0.096 0.904 35 H 0.201 0.799 36 H 0.224 0.776 37 H 0.297 0.703 38 H 0.102 0.898 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 14.460 -22.058 4.301 26.724 hybrid contribution -0.432 0.027 1.519 1.579 sum 14.028 -22.032 5.820 26.759 Atomic orbital electron populations 1.70063 1.07520 1.27876 1.51891 1.25871 0.95771 1.03040 0.94859 0.85436 0.78472 0.78523 0.78515 1.19702 1.20558 1.19341 1.21450 0.93468 0.91522 1.49901 0.92670 1.19901 0.90671 0.90318 0.94258 1.68555 1.32671 1.02372 1.17819 1.23641 0.96780 0.90517 0.99256 1.22857 0.98525 0.93044 0.97532 1.23385 1.01157 0.92258 0.92085 1.23072 0.82557 0.94660 0.99653 1.49503 1.11898 1.53720 1.20651 1.17126 0.84465 0.77288 0.82357 1.90787 1.73484 1.52280 1.27558 1.22753 0.95925 1.00814 0.95120 1.22643 0.93201 0.92269 0.99548 1.22937 0.95460 0.98458 0.97846 1.21269 0.86216 0.91864 0.91376 1.84710 1.15723 1.50058 1.78112 1.73047 0.98056 1.14573 1.28816 1.73357 1.03279 1.11622 1.16099 1.22691 0.97933 0.92065 0.84585 0.92648 0.97580 1.00262 0.87479 0.90923 0.92255 0.91036 0.85894 0.90405 0.79923 0.77606 0.70296 0.89809 0.86346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.45 13.29 21.44 0.28 -56.16 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.53 -30.56 9.36 25.60 0.24 -30.32 16 8 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 9 C 0.18 9.29 4.56 85.56 0.39 9.68 16 10 N -0.49 -20.85 6.14 -935.28 -5.74 -26.59 16 11 C 0.03 0.85 7.78 85.94 0.67 1.52 16 12 C -0.12 -3.29 1.46 -52.89 -0.08 -3.37 16 13 C 0.04 1.50 7.77 85.94 0.67 2.16 16 14 C 0.12 2.89 8.44 83.68 0.71 3.60 16 15 N -0.63 -16.31 3.70 -861.74 -3.19 -19.49 16 16 C 0.60 16.50 8.06 86.81 0.70 17.20 16 17 O -0.56 -17.77 17.16 -3.84 -0.07 -17.83 16 18 C 0.00 0.03 6.83 42.00 0.29 0.32 16 19 C -0.05 -0.75 9.72 22.73 0.22 -0.53 16 20 C -0.12 -1.25 10.14 22.58 0.23 -1.02 16 21 C 0.28 4.39 7.85 84.83 0.67 5.06 16 22 O -0.48 -5.21 13.56 -88.20 -1.20 -6.41 16 23 N -0.29 -6.90 11.54 -170.01 -1.96 -8.86 16 24 N -0.19 -4.96 9.25 -48.51 -0.45 -5.41 16 25 C 0.15 3.69 7.26 83.60 0.61 4.30 16 26 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 27 H 0.01 0.34 8.08 -2.39 -0.02 0.33 16 28 H -0.02 -1.14 7.39 -2.39 -0.02 -1.16 16 29 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.07 2.24 7.93 -2.38 -0.02 2.22 16 31 H 0.06 2.33 7.48 -2.39 -0.02 2.31 16 32 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.18 2.20 7.71 -2.91 -0.02 2.18 16 36 H 0.21 0.35 8.06 -2.91 -0.02 0.32 16 37 H 0.43 -0.16 9.06 -74.06 -0.67 -0.83 16 38 H 0.08 2.38 7.24 -2.39 -0.02 2.36 16 39 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -78.17 339.95 -4.10 -82.26 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: 0.42 Total: 1.97 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 5.77 Total: 9.20 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -11.05 Total: -116.52 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -1.26 Total: -24.24 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -78.17 -4.10 -82.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936912.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.649 kcal (2) G-P(sol) polarization free energy of solvation -78.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds