Wall clock time and date at job start Fri Apr 10 2020 17:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00147 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00098 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99897 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 0.02562 * 7 2 1 9 9 N 1.37090 * 119.99992 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99714 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00111 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99627 * 180.02562 * 10 9 7 13 13 N 1.46506 * 109.46871 * 179.97438 * 12 10 9 14 14 C 1.34773 * 119.99778 * 179.97438 * 13 12 10 15 15 O 1.21282 * 120.00561 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.99914 * 179.97438 * 14 13 12 17 17 H 1.09002 * 109.62835 * 299.99707 * 16 14 13 18 18 C 1.53304 * 109.63605 * 179.59747 * 16 14 13 19 19 C 1.52807 * 108.52013 * 170.51571 * 18 16 14 20 20 C 1.50443 * 110.44808 * 51.03184 * 19 18 16 21 21 N 1.32901 * 118.53758 * 162.33445 * 20 19 18 22 22 C 1.31595 * 121.06092 * 179.77526 * 21 20 19 23 23 N 1.31815 * 121.67951 * 359.95845 * 22 21 20 24 24 C 1.32192 * 120.63461 * 0.12162 * 23 22 21 25 25 C 1.37769 * 122.58221 * 342.28127 * 20 19 18 26 26 C 1.50423 * 122.86707 * 0.42940 * 25 20 19 27 27 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00238 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.47076 * 299.99278 * 12 10 9 30 30 H 1.09002 * 109.47753 * 59.99519 * 12 10 9 31 31 H 0.96990 * 119.99855 * 359.97438 * 13 12 10 32 32 H 1.09003 * 109.63116 * 290.22826 * 18 16 14 33 33 H 1.09000 * 109.63111 * 50.61266 * 18 16 14 34 34 H 1.08999 * 109.31047 * 171.33186 * 19 18 16 35 35 H 1.08998 * 109.31144 * 290.73333 * 19 18 16 36 36 H 1.08006 * 119.16326 * 179.97438 * 22 21 20 37 37 H 1.08003 * 120.36198 * 179.97438 * 24 23 22 38 38 H 1.09005 * 109.50361 * 222.42061 * 26 25 20 39 39 H 1.09001 * 109.15237 * 102.99359 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0090 -1.2034 0.0005 8 1 1.4690 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3706 0.0000 11 8 3.4473 -3.4210 0.0009 12 6 5.5607 -2.3705 0.0000 13 7 6.0491 -3.7518 0.0006 14 6 7.3741 -3.9980 0.0002 15 8 8.1623 -3.0762 -0.0011 16 6 7.8766 -5.4188 0.0014 17 1 7.5151 -5.9342 0.8913 18 6 9.4096 -5.4232 -0.0095 19 6 9.8926 -6.8529 0.2307 20 6 9.2095 -7.8041 -0.7138 21 7 9.7445 -9.0060 -0.9016 22 6 9.1860 -9.8786 -1.7131 23 7 8.0779 -9.6015 -2.3709 24 6 7.4900 -8.4253 -2.2350 25 6 8.0534 -7.4775 -1.3883 26 6 7.3768 -6.1413 -1.2491 27 1 -0.4850 0.8401 0.0004 28 1 3.8649 -0.3633 -0.0011 29 1 5.9240 -1.8567 -0.8901 30 1 5.9242 -1.8566 0.8899 31 1 5.4188 -4.4889 0.0013 32 1 9.7699 -5.0725 -0.9766 33 1 9.7832 -4.7701 0.7791 34 1 10.9701 -6.9005 0.0733 35 1 9.6682 -7.1415 1.2575 36 1 9.6472 -10.8465 -1.8432 37 1 6.5824 -8.2027 -2.7765 38 1 6.2988 -6.2851 -1.1758 39 1 7.5977 -5.5354 -2.1279 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332471351.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:45 Heat of formation + Delta-G solvation = -35.815548 kcal Electronic energy + Delta-G solvation = -23732.379037 eV Core-core repulsion = 20060.477603 eV Total energy + Delta-G solvation = -3671.901434 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.67964 -40.00176 -38.49998 -36.87861 -34.66341 -34.35769 -33.82730 -31.87235 -31.74482 -30.79425 -27.96088 -25.61577 -24.76915 -23.94237 -23.33059 -21.27071 -19.97271 -19.61776 -18.73078 -18.05478 -17.30815 -17.07004 -16.11679 -15.66163 -15.41274 -15.40440 -14.96600 -14.71242 -14.45087 -14.19798 -14.10111 -13.83681 -13.68135 -13.32908 -13.13407 -12.57312 -12.55048 -12.24486 -12.18624 -12.01166 -11.46055 -11.28493 -11.26212 -11.11542 -10.69179 -10.68407 -10.11699 -9.82739 -9.75532 -9.52967 -9.48045 -9.00016 -8.84352 -8.36249 -6.45964 -3.98844 0.59182 0.73980 2.59543 2.94946 2.99774 3.07718 3.14349 3.43540 3.49425 3.67762 3.90658 3.98661 4.10960 4.21165 4.30342 4.45650 4.50997 4.69601 4.91690 4.96496 5.07045 5.08736 5.11400 5.20539 5.31368 5.45316 5.51019 5.61381 5.70439 5.72555 5.73348 5.79427 5.93216 6.12801 6.45148 6.67769 7.38066 7.61023 7.78282 7.94332 8.23488 8.39571 8.76115 9.24052 9.56874 10.66057 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.028870 B = 0.002663 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.646194 B =10512.417810 C =11270.409715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.267 1.267 6 H -0.274 1.274 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.575 5.575 10 C 0.436 3.564 11 O -0.580 6.580 12 C 0.105 3.895 13 N -0.706 5.706 14 C 0.518 3.482 15 O -0.545 6.545 16 C -0.107 4.107 17 H 0.104 0.896 18 C -0.099 4.099 19 C -0.073 4.073 20 C 0.180 3.820 21 N -0.522 5.522 22 C 0.287 3.713 23 N -0.522 5.522 24 C 0.153 3.847 25 C -0.176 4.176 26 C -0.067 4.067 27 H 0.276 0.724 28 H 0.374 0.626 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.412 0.588 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.195 0.805 37 H 0.171 0.829 38 H 0.093 0.907 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.830 -12.095 -1.490 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.192 1.192 6 H -0.199 1.199 7 C -0.440 4.440 8 H 0.139 0.861 9 N -0.213 5.213 10 C 0.222 3.778 11 O -0.464 6.464 12 C -0.023 4.023 13 N -0.360 5.360 14 C 0.303 3.697 15 O -0.423 6.423 16 C -0.128 4.128 17 H 0.122 0.878 18 C -0.137 4.137 19 C -0.111 4.111 20 C 0.036 3.964 21 N -0.236 5.236 22 C -0.001 4.001 23 N -0.236 5.236 24 C -0.014 4.014 25 C -0.180 4.180 26 C -0.105 4.105 27 H 0.087 0.913 28 H 0.208 0.792 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.250 0.750 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.211 0.789 37 H 0.188 0.812 38 H 0.111 0.889 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 19.168 -12.901 -1.606 23.161 hybrid contribution -0.296 1.763 0.028 1.788 sum 18.872 -11.138 -1.578 21.970 Atomic orbital electron populations 1.69617 1.05726 1.27882 1.47928 1.25077 0.95539 0.98202 0.97071 0.86670 0.79898 0.83753 0.79161 1.19368 1.19235 1.19940 1.19438 0.78936 0.96806 1.48790 0.86058 1.42132 1.07731 1.06158 1.65235 1.19628 0.88037 0.84900 0.85203 1.90539 1.69188 1.30879 1.55810 1.20996 0.93837 0.84067 1.03384 1.45740 1.07052 1.09211 1.73995 1.20372 0.82088 0.90927 0.76265 1.90696 1.55411 1.46078 1.50084 1.21343 0.97816 0.93391 1.00277 0.87781 1.21422 0.92675 0.95119 1.04469 1.20476 1.00821 0.92029 0.97768 1.21386 0.90428 0.91576 0.92989 1.68401 1.33963 1.02875 1.18381 1.24901 0.88645 0.98610 0.87901 1.68436 1.10793 1.20509 1.23831 1.23358 0.97937 0.87638 0.92495 1.21122 0.97800 0.98848 1.00233 1.20350 1.00494 0.91511 0.98183 0.91326 0.79235 0.89669 0.89670 0.74966 0.90622 0.89172 0.88681 0.88879 0.78860 0.81198 0.88855 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.48 13.96 55.50 0.77 -23.70 16 2 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 18.54 27.74 -169.99 -4.71 13.83 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.27 -5.13 6.52 56.52 0.37 -4.76 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.31 -8.36 10.16 -14.93 -0.15 -8.51 16 8 H 0.12 3.72 7.39 -52.49 -0.39 3.33 16 9 N -0.58 -12.89 5.09 -10.96 -0.06 -12.95 16 10 C 0.44 9.10 7.85 -10.98 -0.09 9.01 16 11 O -0.58 -13.92 15.24 5.55 0.08 -13.84 16 12 C 0.10 1.67 6.15 -5.19 -0.03 1.64 16 13 N -0.71 -9.88 5.44 -61.47 -0.33 -10.22 16 14 C 0.52 6.65 7.14 -10.98 -0.08 6.58 16 15 O -0.54 -8.64 15.84 5.56 0.09 -8.55 16 16 C -0.11 -0.98 2.54 -91.70 -0.23 -1.22 16 17 H 0.10 0.84 8.10 -51.93 -0.42 0.42 16 18 C -0.10 -0.84 4.71 -26.67 -0.13 -0.97 16 19 C -0.07 -0.56 5.96 -28.11 -0.17 -0.73 16 20 C 0.18 1.72 6.62 -82.43 -0.55 1.17 16 21 N -0.52 -5.37 10.32 -11.00 -0.11 -5.48 16 22 C 0.29 2.71 12.29 -92.31 -1.13 1.57 16 23 N -0.52 -5.37 10.44 -14.54 -0.15 -5.52 16 24 C 0.15 1.39 10.93 -17.11 -0.19 1.21 16 25 C -0.18 -1.59 5.74 -104.64 -0.60 -2.19 16 26 C -0.07 -0.56 4.89 -28.11 -0.14 -0.69 16 27 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.37 7.39 5.76 -40.82 -0.24 7.15 16 29 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.41 5.66 7.08 -40.82 -0.29 5.37 16 32 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.09 0.80 7.80 -51.93 -0.41 0.39 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.19 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.17 1.15 8.06 -52.48 -0.42 0.72 16 38 H 0.09 0.71 7.85 -51.93 -0.41 0.30 16 39 H 0.09 0.76 8.11 -51.93 -0.42 0.34 16 LS Contribution 332.49 15.07 5.01 5.01 Total: -1.00 -33.06 332.49 -7.68 -40.74 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -4.69 Total: 12.71 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -3.58 Total: 7.98 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 0.12 Total: -57.87 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: 0.17 Total: -22.39 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -4.71 Total: 13.83 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.06 -7.68 -40.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332471351.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.927 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds