Wall clock time and date at job start Fri Apr 10 2020 17:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86802 * 120.00343 * 2 1 4 4 H 1.48499 * 109.47252 * 240.00491 * 3 2 1 5 5 H 1.48501 * 109.46721 * 0.02562 * 3 2 1 6 6 H 1.48490 * 109.47451 * 120.00194 * 3 2 1 7 7 C 1.37885 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99566 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99844 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46545 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99649 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47405 * 179.97438 * 11 10 9 13 13 O 1.42903 * 109.46726 * 64.99720 * 12 11 10 14 14 C 1.42899 * 113.99629 * 180.02562 * 13 12 11 15 15 C 1.53009 * 109.47113 * 180.02562 * 14 13 12 16 16 O 1.45193 * 109.46913 * 64.99838 * 15 14 13 17 17 C 1.34229 * 116.99914 * 180.02562 * 16 15 14 18 18 O 1.20828 * 119.99874 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00141 * 180.02562 * 17 16 15 20 20 H 1.08999 * 109.52836 * 55.12911 * 19 17 16 21 21 C 1.53142 * 109.52736 * 294.99910 * 19 17 16 22 22 O 1.43075 * 109.15551 * 184.78534 * 21 19 17 23 23 C 1.43071 * 113.59048 * 57.95199 * 22 21 19 24 24 C 1.53144 * 109.15469 * 302.04881 * 23 22 21 25 25 O 1.43075 * 109.52675 * 175.32767 * 19 17 16 26 26 H 0.97004 * 120.00403 * 359.97438 * 1 2 3 27 27 H 1.08990 * 109.47088 * 60.00044 * 9 7 2 28 28 H 1.08992 * 109.46694 * 299.99407 * 9 7 2 29 29 H 1.09002 * 109.47445 * 59.99875 * 11 10 9 30 30 H 1.09002 * 109.47167 * 299.99793 * 11 10 9 31 31 H 1.09002 * 109.47398 * 184.99964 * 12 11 10 32 32 H 1.09001 * 109.47194 * 305.00145 * 12 11 10 33 33 H 1.09007 * 109.47484 * 299.99646 * 14 13 12 34 34 H 1.09004 * 109.47459 * 59.99983 * 14 13 12 35 35 H 1.09000 * 109.47262 * 184.99920 * 15 14 13 36 36 H 1.09002 * 109.46484 * 304.99927 * 15 14 13 37 37 H 1.08994 * 109.52181 * 304.69155 * 21 19 17 38 38 H 1.09006 * 109.52407 * 64.81596 * 21 19 17 39 39 H 1.08995 * 109.52730 * 61.95049 * 23 22 21 40 40 H 1.09006 * 109.52516 * 182.14963 * 23 22 21 41 41 H 1.08996 * 109.52744 * 175.21766 * 24 23 22 42 42 H 1.08999 * 109.52115 * 295.34886 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0017 11 6 1.5649 -4.8754 0.0024 12 6 2.6478 -5.9563 0.0030 13 8 3.3872 -5.8890 1.2241 14 6 4.4295 -6.8611 1.3267 15 6 5.1496 -6.6973 2.6667 16 8 4.2319 -7.0023 3.7498 17 6 4.7109 -6.9051 4.9999 18 8 5.8591 -6.5766 5.1831 19 6 3.8169 -7.2069 6.1749 20 1 3.3940 -8.2054 6.0640 21 6 2.6860 -6.1760 6.2358 22 8 1.9081 -6.4016 7.4151 23 6 2.6694 -6.3351 8.6246 24 6 3.8003 -7.3660 8.5640 25 8 4.5782 -7.1403 7.3845 26 1 -0.4851 0.8400 0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 0.9451 -4.9831 -0.8877 30 1 0.9444 -4.9818 0.8922 31 1 2.1818 -6.9376 -0.0860 32 1 3.3214 -5.7962 -0.8388 33 1 4.0008 -7.8615 1.2650 34 1 5.1400 -6.7195 0.5123 35 1 5.9996 -7.3784 2.7081 36 1 5.5015 -5.6705 2.7668 37 1 3.1095 -5.1721 6.2652 38 1 2.0521 -6.2783 5.3549 39 1 3.0923 -5.3365 8.7345 40 1 2.0227 -6.5534 9.4746 41 1 4.4348 -7.2629 9.4442 42 1 3.3768 -8.3699 8.5356 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345080384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:58 Heat of formation + Delta-G solvation = -261.849350 kcal Electronic energy + Delta-G solvation = -24919.237451 eV Core-core repulsion = 20865.640034 eV Total energy + Delta-G solvation = -4053.597417 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.149 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.05593 -39.80831 -38.09455 -36.88043 -36.35776 -36.06872 -32.75435 -32.43979 -31.01470 -29.10286 -28.46219 -26.74389 -25.57145 -23.33552 -22.40591 -22.21541 -21.91853 -21.11518 -18.29677 -17.53781 -17.36155 -16.91179 -16.61484 -16.43338 -16.30433 -16.01439 -15.83123 -15.45456 -14.95930 -14.86367 -14.39127 -14.14805 -14.03460 -13.85395 -13.27035 -13.11004 -12.80261 -12.58745 -12.12610 -12.00217 -11.78215 -11.63391 -11.33726 -11.16200 -11.01351 -10.86516 -10.82083 -10.75893 -10.49587 -10.45289 -9.99265 -9.65776 -9.52012 -9.08844 -8.80792 -8.15012 -6.08426 -4.09858 1.89283 1.97348 3.27201 3.34482 3.36797 3.41106 3.49890 3.68237 4.04698 4.31085 4.36725 4.45234 4.54206 4.67009 4.73554 4.76408 4.86167 4.97590 5.06282 5.14471 5.22410 5.27970 5.30933 5.32903 5.39309 5.44146 5.53282 5.59036 6.00726 6.01493 6.16074 6.22492 6.39313 6.54443 7.11420 7.29939 7.45589 7.51252 7.82002 8.17774 8.60241 9.03228 9.54754 11.03170 Molecular weight = 304.15amu Principal moments of inertia in cm(-1) A = 0.012197 B = 0.002962 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.177019 B = 9450.564439 C =10633.491036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.390 6.390 11 C 0.063 3.937 12 C 0.068 3.932 13 O -0.368 6.368 14 C 0.061 3.939 15 C 0.072 3.928 16 O -0.342 6.342 17 C 0.470 3.530 18 O -0.485 6.485 19 C 0.067 3.933 20 H 0.108 0.892 21 C 0.038 3.962 22 O -0.368 6.368 23 C 0.017 3.983 24 C 0.027 3.973 25 O -0.356 6.356 26 H 0.264 0.736 27 H 0.004 0.996 28 H 0.006 0.994 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.126 0.874 39 H 0.066 0.934 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.047 -19.979 12.678 24.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.309 6.309 11 C -0.015 4.015 12 C -0.008 4.008 13 O -0.287 6.287 14 C -0.016 4.016 15 C -0.002 4.002 16 O -0.259 6.259 17 C 0.311 3.689 18 O -0.371 6.371 19 C 0.007 3.993 20 H 0.125 0.875 21 C -0.039 4.039 22 O -0.287 6.287 23 C -0.060 4.060 24 C -0.050 4.050 25 O -0.275 6.275 26 H 0.074 0.926 27 H 0.022 0.978 28 H 0.024 0.976 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.144 0.856 39 H 0.085 0.915 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.412 -19.571 12.836 24.267 hybrid contribution 0.286 0.657 -0.210 0.746 sum 6.697 -18.914 12.625 23.707 Atomic orbital electron populations 1.69949 1.06097 1.27244 1.50577 1.24944 0.94979 0.99406 0.95158 0.86393 0.79315 0.81901 0.78857 1.20031 1.21155 1.19989 1.21028 0.94051 0.89388 1.50812 0.91607 1.20197 0.88770 0.83619 0.95346 1.87909 1.35204 1.12663 1.95169 1.22256 0.93687 0.85625 0.99898 1.22601 0.94061 0.97401 0.86735 1.88096 1.47033 1.54896 1.38710 1.22508 0.91387 0.93177 0.94483 1.23224 0.90887 1.03070 0.82971 1.86498 1.44747 1.80064 1.14546 1.22749 0.87124 0.74865 0.84162 1.90702 1.18868 1.41546 1.85944 1.22037 0.90933 1.02402 0.83894 0.87451 1.23186 0.93149 0.97523 0.90089 1.88172 1.34082 1.92690 1.13731 1.23353 0.94624 0.99588 0.88418 1.23390 0.94500 0.98980 0.88121 1.88173 1.33636 1.93068 1.12665 0.92613 0.97776 0.97634 0.92943 0.93570 0.92639 0.92661 0.92387 0.90778 0.89575 0.89588 0.90944 0.85580 0.91535 0.87195 0.86891 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.28 55.43 0.74 -26.51 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.91 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -15.50 9.43 -34.44 -0.32 -15.82 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.19 5.47 5.69 36.01 0.20 5.67 16 10 O -0.39 -9.70 10.29 -40.09 -0.41 -10.11 16 11 C 0.06 1.18 6.32 37.16 0.23 1.42 16 12 C 0.07 1.01 6.32 37.16 0.23 1.25 16 13 O -0.37 -5.94 10.28 -48.79 -0.50 -6.45 16 14 C 0.06 0.69 6.33 37.16 0.24 0.93 16 15 C 0.07 0.84 5.84 37.16 0.22 1.06 16 16 O -0.34 -4.35 10.19 -42.02 -0.43 -4.78 16 17 C 0.47 6.16 7.29 36.00 0.26 6.43 16 18 O -0.48 -7.78 16.26 -25.45 -0.41 -8.19 16 19 C 0.07 0.71 3.37 -27.81 -0.09 0.62 16 20 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 21 C 0.04 0.40 6.31 37.23 0.24 0.64 16 22 O -0.37 -3.88 10.85 -48.80 -0.53 -4.41 16 23 C 0.02 0.13 7.05 37.23 0.26 0.39 16 24 C 0.03 0.19 7.05 37.23 0.26 0.46 16 25 O -0.36 -4.05 10.03 -62.53 -0.63 -4.68 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.00 0.13 8.14 -51.93 -0.42 -0.30 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.81 8.13 -51.93 -0.42 0.38 16 36 H 0.09 1.13 8.13 -51.93 -0.42 0.71 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.13 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -36.64 363.02 -6.82 -43.46 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -6.73 Total: -5.57 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 1.63 Total: 4.58 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.51 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -2.91 Total: -38.61 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.64 -6.82 -43.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345080384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -218.388 kcal (2) G-P(sol) polarization free energy of solvation -36.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -261.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds