Wall clock time and date at job start Fri Apr 10 2020 17:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.21879 * 2 1 4 4 C 1.53476 * 109.33126 * 240.69174 * 2 1 3 5 5 N 1.47263 * 107.93015 * 286.52694 * 4 2 1 6 6 C 1.34781 * 121.35391 * 118.51461 * 5 4 2 7 7 O 1.21593 * 119.99380 * 356.25642 * 6 5 4 8 8 C 1.47531 * 120.00142 * 176.25217 * 6 5 4 9 9 C 1.39656 * 120.20088 * 331.02230 * 8 6 5 10 10 C 1.37828 * 119.92297 * 180.02562 * 9 8 6 11 11 C 1.38574 * 120.32261 * 0.02562 * 10 9 8 12 12 C 1.38028 * 120.39911 * 359.97438 * 11 10 9 13 13 C 1.38830 * 120.07471 * 0.02562 * 12 11 10 14 14 O 1.35518 * 120.16272 * 180.02562 * 13 12 11 15 15 C 1.34812 * 116.99895 * 354.39762 * 14 13 12 16 16 H 1.08003 * 120.00100 * 5.05775 * 15 14 13 17 17 C 1.38698 * 119.99993 * 185.05236 * 15 14 13 18 18 N 1.31518 * 120.00041 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99968 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47304 * 89.99648 * 19 17 15 21 21 H 1.48498 * 109.46625 * 209.99677 * 19 17 15 22 22 H 1.48500 * 109.46662 * 329.99232 * 19 17 15 23 23 C 1.47048 * 117.29899 * 298.23837 * 5 4 2 24 24 C 1.50440 * 108.89004 * 42.98879 * 23 5 4 25 25 O 1.21276 * 118.49482 * 167.27201 * 24 23 5 26 26 N 1.33383 * 123.02102 * 347.29916 * 24 23 5 27 27 H 1.08996 * 109.47367 * 300.61921 * 1 2 3 28 28 H 1.09002 * 109.47025 * 60.62411 * 1 2 3 29 29 H 1.09001 * 109.47055 * 180.61910 * 1 2 3 30 30 H 1.08999 * 109.84598 * 166.93533 * 4 2 1 31 31 H 1.08993 * 109.83895 * 46.11872 * 4 2 1 32 32 H 1.08007 * 120.04086 * 0.02562 * 9 8 6 33 33 H 1.08004 * 119.84239 * 180.27737 * 10 9 8 34 34 H 1.07996 * 119.80068 * 180.02562 * 11 10 9 35 35 H 1.08000 * 119.96248 * 180.02562 * 12 11 10 36 36 H 0.97002 * 119.99914 * 180.02562 * 18 17 15 37 37 H 1.08994 * 109.57215 * 162.81388 * 23 5 4 38 38 H 1.08998 * 109.56846 * 283.05464 * 23 5 4 39 39 H 0.96996 * 117.70746 * 184.29717 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8888 1.0292 0.0000 4 6 2.0380 -0.7089 -1.2629 5 7 1.8120 -2.1542 -1.0934 6 6 1.0079 -2.8410 -1.9291 7 8 0.3984 -2.2561 -2.8037 8 6 0.8673 -4.3023 -1.7827 9 6 1.9185 -5.0606 -1.2628 10 6 1.7812 -6.4254 -1.1290 11 6 0.6043 -7.0507 -1.5086 12 6 -0.4431 -6.3142 -2.0240 13 6 -0.3227 -4.9385 -2.1660 14 8 -1.3501 -4.2135 -2.6714 15 6 -2.4180 -4.8996 -3.1255 16 1 -2.4633 -5.9717 -3.0025 17 6 -3.4586 -4.2287 -3.7507 18 7 -4.5002 -4.8981 -4.1942 19 14 -3.3800 -2.3746 -3.9640 20 1 -2.7251 -2.0524 -5.2573 21 1 -4.7560 -1.8164 -3.9533 22 1 -2.5964 -1.7811 -2.8509 23 6 2.5041 -2.8190 0.0207 24 6 2.4107 -1.9461 1.2424 25 8 2.7138 -2.4201 2.3168 26 7 2.0094 -0.6748 1.1985 27 1 -0.3634 0.5234 0.8843 28 1 -0.3633 0.5041 -0.8955 29 1 -0.3633 -1.0276 0.0111 30 1 3.1029 -0.5159 -1.3925 31 1 1.4899 -0.3506 -2.1341 32 1 2.8381 -4.5780 -0.9658 33 1 2.5934 -7.0100 -0.7225 34 1 0.5057 -8.1206 -1.3997 35 1 -1.3574 -6.8088 -2.3172 36 1 -5.2278 -4.4289 -4.6317 37 1 2.0320 -3.7805 0.2222 38 1 3.5510 -2.9739 -0.2401 39 1 2.0386 -0.1639 2.0224 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001449827648.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:02 Heat of formation + Delta-G solvation = -67.552795 kcal Electronic energy + Delta-G solvation = -25626.570619 eV Core-core repulsion = 21921.000203 eV Total energy + Delta-G solvation = -3705.570416 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.10281 -40.98735 -39.79342 -38.29877 -37.74866 -35.68750 -34.53505 -32.62721 -31.77981 -30.89465 -28.97096 -27.94734 -27.18347 -24.48823 -23.97283 -22.90840 -21.55071 -20.26474 -19.88051 -19.18924 -18.40397 -18.10919 -17.51157 -17.01779 -16.75429 -16.33264 -16.12227 -15.83730 -15.69467 -15.51518 -15.25651 -15.07359 -14.59070 -14.30229 -14.24397 -14.12429 -13.70789 -13.46776 -13.14436 -13.08415 -12.77062 -12.66852 -12.48288 -12.43605 -12.31886 -12.06089 -11.55858 -11.45412 -10.98396 -10.75305 -10.26895 -9.92026 -9.73422 -9.17222 -8.58781 -6.28527 0.04289 0.59745 1.22294 1.29803 1.42430 1.50222 1.68248 1.86346 2.24709 2.25399 2.71904 2.94096 3.10498 3.33230 3.45908 3.66002 3.94624 3.99553 4.08772 4.20971 4.23277 4.32419 4.45733 4.48018 4.63434 4.68118 4.73390 4.76157 4.78517 5.01067 5.18455 5.24687 5.31147 5.44035 5.58786 5.66089 5.75642 5.81604 6.12180 6.15355 6.18484 6.76982 7.05521 7.16425 7.53854 8.51847 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.013848 B = 0.006188 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.496497 B = 4523.877588 C = 5998.589234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.132 3.868 3 H 0.145 0.855 4 C 0.094 3.906 5 N -0.613 5.613 6 C 0.571 3.429 7 O -0.561 6.561 8 C -0.234 4.234 9 C -0.049 4.049 10 C -0.186 4.186 11 C -0.043 4.043 12 C -0.248 4.248 13 C 0.163 3.837 14 O -0.217 6.217 15 C -0.401 4.401 16 H 0.091 0.909 17 C 0.024 3.976 18 N -0.911 5.911 19 Si 0.962 3.038 20 H -0.275 1.275 21 H -0.264 1.264 22 H -0.271 1.271 23 C 0.082 3.918 24 C 0.514 3.486 25 O -0.585 6.585 26 N -0.701 5.701 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.018 0.982 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.172 0.828 33 H 0.168 0.832 34 H 0.151 0.849 35 H 0.116 0.884 36 H 0.286 0.714 37 H 0.128 0.872 38 H 0.146 0.854 39 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.013 7.944 9.292 21.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.027 3.973 3 H 0.162 0.838 4 C -0.028 4.028 5 N -0.349 5.349 6 C 0.362 3.638 7 O -0.440 6.440 8 C -0.238 4.238 9 C -0.066 4.066 10 C -0.205 4.205 11 C -0.061 4.061 12 C -0.267 4.267 13 C 0.110 3.890 14 O -0.122 6.122 15 C -0.477 4.477 16 H 0.108 0.892 17 C -0.177 4.177 18 N -0.551 5.551 19 Si 0.786 3.214 20 H -0.201 1.201 21 H -0.189 1.189 22 H -0.196 1.196 23 C -0.043 4.043 24 C 0.300 3.700 25 O -0.466 6.466 26 N -0.352 5.352 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.037 0.963 30 H 0.135 0.865 31 H 0.115 0.885 32 H 0.189 0.811 33 H 0.185 0.815 34 H 0.169 0.831 35 H 0.134 0.866 36 H 0.096 0.904 37 H 0.146 0.854 38 H 0.163 0.837 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 17.558 8.156 9.010 21.354 hybrid contribution -1.119 0.426 -0.209 1.216 sum 16.439 8.582 8.801 20.526 Atomic orbital electron populations 1.22242 0.96294 1.00782 1.03167 1.21562 0.93497 0.98537 0.83751 0.83800 1.22369 1.03709 0.78377 0.98306 1.47960 1.47439 1.09834 1.29692 1.18252 0.77621 0.87094 0.80787 1.90789 1.46157 1.71043 1.35962 1.19183 0.95460 0.93224 1.15969 1.21749 0.96913 0.94543 0.93431 1.21278 0.99058 0.94234 1.05894 1.21456 0.91694 1.00718 0.92235 1.21345 1.02397 0.93114 1.09887 1.19652 0.87223 0.91160 0.90976 1.83654 1.24146 1.35428 1.68943 1.20837 0.95489 0.93684 1.37724 0.89158 1.25080 0.93938 1.03789 0.94853 1.69685 1.08524 1.38277 1.38627 0.85325 0.77218 0.79410 0.79409 1.20075 1.18915 1.19565 1.22711 1.01678 0.97328 0.82546 1.20547 0.75796 0.82963 0.90649 1.90780 1.52214 1.72807 1.30789 1.45449 1.64265 1.11714 1.13746 0.90507 0.91329 0.96310 0.86466 0.88523 0.81055 0.81475 0.83105 0.86643 0.90422 0.85414 0.83656 0.75542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.77 9.38 71.98 0.68 -3.10 16 2 C 0.13 2.06 3.87 45.31 0.18 2.24 16 3 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 4 C 0.09 1.81 5.92 86.39 0.51 2.32 16 5 N -0.61 -15.97 2.74 -826.12 -2.26 -18.24 16 6 C 0.57 21.71 7.40 86.69 0.64 22.35 16 7 O -0.56 -26.70 15.20 14.52 0.22 -26.48 16 8 C -0.23 -9.01 5.49 -19.99 -0.11 -9.12 16 9 C -0.05 -1.31 7.47 22.52 0.17 -1.14 16 10 C -0.19 -4.63 10.02 22.25 0.22 -4.41 16 11 C -0.04 -1.31 10.03 22.30 0.22 -1.09 16 12 C -0.25 -10.49 9.16 22.36 0.20 -10.29 16 13 C 0.16 7.75 6.63 22.91 0.15 7.90 16 14 O -0.22 -12.39 7.07 -1.48 -0.01 -12.40 16 15 C -0.40 -24.24 9.95 67.93 0.68 -23.56 16 16 H 0.09 5.55 5.44 -2.91 -0.02 5.53 16 17 C 0.02 1.41 5.49 84.85 0.47 1.88 16 18 N -0.91 -55.25 13.96 21.62 0.30 -54.95 16 19 Si 0.96 49.79 28.62 68.60 1.96 51.75 16 20 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 21 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.27 -14.69 7.11 99.48 0.71 -13.98 16 23 C 0.08 1.68 4.72 85.45 0.40 2.08 16 24 C 0.51 11.67 7.84 87.79 0.69 12.36 16 25 O -0.59 -17.29 17.80 -3.02 -0.05 -17.34 16 26 N -0.70 -12.20 5.00 -445.62 -2.23 -14.43 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.02 0.58 7.99 -2.39 -0.02 0.56 16 30 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.10 2.28 7.01 -2.39 -0.02 2.27 16 32 H 0.17 3.10 5.07 -2.91 -0.01 3.09 16 33 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 35 H 0.12 5.35 5.64 -2.91 -0.02 5.34 16 36 H 0.29 15.94 8.31 -92.71 -0.77 15.17 16 37 H 0.13 2.93 4.78 -2.39 -0.01 2.92 16 38 H 0.15 1.81 7.64 -2.39 -0.02 1.79 16 39 H 0.41 5.82 8.80 -92.71 -0.82 5.00 16 Total: -1.00 -83.02 324.45 3.33 -79.70 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.30 Total: 13.95 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 5.10 Total: -1.57 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -4.19 Total: -87.61 kcal Atomic # 8 Polarization: -56.37 SS G_CDS: 0.16 Total: -56.22 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 1.96 Total: 51.75 kcal Total: -83.02 3.33 -79.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449827648.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.144 kcal (2) G-P(sol) polarization free energy of solvation -83.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds