Wall clock time and date at job start Fri Apr 10 2020 17:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.38183 * 126.45372 * 251.39026 * 3 2 1 5 5 N 1.34422 * 108.38482 * 180.15312 * 4 3 2 6 6 H 0.97000 * 125.40734 * 179.87092 * 5 4 3 7 7 C 1.37747 * 109.18838 * 359.60742 * 5 4 3 8 8 C 1.46795 * 125.85179 * 180.26426 * 7 5 4 9 9 O 1.21686 * 120.00021 * 179.97438 * 8 7 5 10 10 N 1.34775 * 120.00045 * 359.97401 * 8 7 5 11 11 C 1.46498 * 120.00201 * 174.79729 * 10 8 7 12 12 C 1.52997 * 112.94638 * 295.31193 * 11 10 8 13 13 C 1.53000 * 109.47303 * 304.23442 * 12 11 10 14 14 O 1.42896 * 109.47001 * 178.34739 * 13 12 11 15 15 C 1.53943 * 113.74237 * 163.71502 * 11 10 8 16 16 N 1.47807 * 86.03888 * 222.08894 * 15 11 10 17 17 C 1.36942 * 134.45510 * 204.64665 * 16 15 11 18 18 H 1.08004 * 119.99922 * 179.86627 * 17 16 15 19 19 C 1.38808 * 120.00029 * 359.86665 * 17 16 15 20 20 N 1.31620 * 120.00374 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00053 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46805 * 90.00182 * 21 19 17 23 23 H 1.48495 * 109.47085 * 209.99720 * 21 19 17 24 24 H 1.48494 * 109.46976 * 330.00394 * 21 19 17 25 25 C 1.47576 * 91.05301 * 24.55085 * 16 15 11 26 26 C 1.36416 * 108.30139 * 0.24230 * 7 5 4 27 27 H 1.08006 * 125.80682 * 0.03917 * 4 3 2 28 28 H 0.97000 * 119.99982 * 354.80055 * 10 8 7 29 29 H 1.08999 * 109.47181 * 64.23729 * 12 11 10 30 30 H 1.09002 * 109.47022 * 184.23222 * 12 11 10 31 31 H 1.09003 * 109.46612 * 298.35020 * 13 12 11 32 32 H 1.09001 * 109.46883 * 58.34508 * 13 12 11 33 33 H 0.96702 * 113.99498 * 179.97438 * 14 13 12 34 34 H 1.09004 * 113.77119 * 336.35891 * 15 11 10 35 35 H 1.09004 * 113.77091 * 107.74995 * 15 11 10 36 36 H 0.96997 * 120.00191 * 180.02562 * 20 19 17 37 37 H 1.08996 * 113.77228 * 221.15095 * 25 16 15 38 38 H 1.09001 * 113.86935 * 89.76187 * 25 16 15 39 39 H 1.07995 * 126.48305 * 180.02562 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3889 0.3557 1.0533 5 7 4.6669 0.2265 0.6571 6 1 5.4463 0.4134 1.2034 7 6 4.6940 -0.2193 -0.6459 8 6 5.9005 -0.4899 -1.4371 9 8 5.8003 -0.8829 -2.5844 10 7 7.1193 -0.3030 -0.8928 11 6 8.3212 -0.6803 -1.6406 12 6 8.4181 -2.1861 -1.8937 13 6 8.3445 -2.9332 -0.5605 14 8 8.3963 -4.3410 -0.7999 15 6 9.6164 -0.0605 -1.0857 16 7 9.9846 0.1797 -2.4969 17 6 11.1692 0.3393 -3.1652 18 1 11.1690 0.5061 -4.2323 19 6 12.3702 0.2866 -2.4712 20 7 12.3705 0.0838 -1.1707 21 14 13.9861 0.5035 -3.3829 22 1 14.3504 1.9430 -3.4090 23 1 15.0520 -0.2643 -2.6906 24 1 13.8404 0.0045 -4.7739 25 6 8.5640 0.1762 -2.8966 26 6 3.4075 -0.3668 -1.0751 27 1 3.0597 0.6833 2.0285 28 1 7.2006 0.0813 -0.0059 29 1 7.5930 -2.5010 -2.5326 30 1 9.3646 -2.4118 -2.3849 31 1 9.1862 -2.6400 0.0671 32 1 7.4110 -2.6845 -0.0557 33 1 8.3546 -4.8782 0.0031 34 1 9.4560 0.8524 -0.5120 35 1 10.2631 -0.7757 -0.5774 36 1 13.2097 0.0474 -0.6857 37 1 8.3719 -0.3504 -3.8313 38 1 8.0922 1.1580 -2.8567 39 1 3.0908 -0.7015 -2.0518 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485402486.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:04 Heat of formation + Delta-G solvation = 19.234197 kcal Electronic energy + Delta-G solvation = -24414.518128 eV Core-core repulsion = 20745.003830 eV Total energy + Delta-G solvation = -3669.514298 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.53799 -41.18340 -39.09919 -37.67626 -37.40035 -35.34051 -33.87603 -32.45252 -31.93065 -30.47006 -28.95277 -26.83853 -25.47905 -23.99873 -23.72693 -23.07265 -21.25665 -20.20879 -20.15350 -18.75763 -18.38488 -17.44688 -17.20240 -16.86174 -16.63784 -16.33116 -15.95256 -15.65456 -15.29040 -15.18816 -14.86772 -14.67221 -14.37628 -14.30221 -14.03801 -13.83586 -13.61632 -13.31691 -13.22721 -12.91615 -12.86655 -12.78378 -12.55950 -12.23274 -12.06338 -11.72482 -11.45105 -11.08183 -10.90521 -10.74648 -10.17008 -10.08582 -9.32967 -8.94406 -7.92767 -5.24627 0.48151 0.81324 1.47505 1.48413 1.56917 1.73347 2.02193 2.08734 2.30075 2.49778 2.71664 3.15890 3.22049 3.27908 3.40878 3.62419 3.88149 4.15789 4.22569 4.24122 4.31281 4.35805 4.49581 4.65590 4.72837 4.75848 4.88161 4.96972 5.00564 5.16053 5.17168 5.23962 5.40769 5.49596 5.59395 5.70912 5.91198 6.37461 6.61513 6.68671 6.92306 6.94497 7.23312 7.57966 8.50612 9.24033 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.023471 B = 0.003260 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.685194 B = 8586.839538 C = 9051.555633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.316 3.684 3 C -0.164 4.164 4 C 0.146 3.854 5 N -0.503 5.503 6 H 0.445 0.555 7 C -0.057 4.057 8 C 0.587 3.413 9 O -0.561 6.561 10 N -0.701 5.701 11 C 0.159 3.841 12 C -0.092 4.092 13 C 0.092 3.908 14 O -0.594 6.594 15 C 0.173 3.827 16 N -0.632 5.632 17 C -0.235 4.235 18 H 0.077 0.923 19 C -0.056 4.056 20 N -0.945 5.945 21 Si 0.974 3.026 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.275 1.275 25 C 0.124 3.876 26 C -0.065 4.065 27 H 0.237 0.763 28 H 0.412 0.588 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.397 0.603 34 H 0.039 0.961 35 H 0.060 0.940 36 H 0.251 0.749 37 H 0.039 0.961 38 H 0.044 0.956 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.760 -0.595 12.068 18.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C 0.003 3.997 3 C -0.174 4.174 4 C -0.001 4.001 5 N -0.099 5.099 6 H 0.287 0.713 7 C -0.168 4.168 8 C 0.376 3.624 9 O -0.439 6.439 10 N -0.354 5.354 11 C 0.071 3.929 12 C -0.131 4.131 13 C 0.015 3.985 14 O -0.402 6.402 15 C 0.048 3.952 16 N -0.359 5.359 17 C -0.363 4.363 18 H 0.095 0.905 19 C -0.250 4.250 20 N -0.593 5.593 21 Si 0.803 3.197 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.200 1.200 25 C -0.002 4.002 26 C -0.092 4.092 27 H 0.253 0.747 28 H 0.249 0.751 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.246 0.754 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.964 -0.664 10.618 18.360 hybrid contribution 1.820 0.333 0.265 1.869 sum -13.143 -0.331 10.883 17.067 Atomic orbital electron populations 1.81295 1.13325 1.12851 1.09352 1.24855 0.91640 0.91181 0.92049 1.15393 0.84079 1.20137 0.97775 1.22947 0.81054 0.96439 0.99639 1.41770 1.09373 1.48357 1.10407 0.71263 1.19590 0.93849 1.16125 0.87243 1.17377 0.82272 0.76983 0.85798 1.90861 1.86641 1.47870 1.18527 1.45740 1.04314 1.64326 1.20998 1.22200 0.84028 0.93358 0.93274 1.21209 1.01736 0.91913 0.98194 1.21966 1.00316 0.80403 0.95835 1.86447 1.97512 1.17949 1.38336 1.22483 0.88882 0.96492 0.87364 1.45984 1.00161 1.84424 1.05377 1.19277 0.83130 1.42074 0.91864 0.90494 1.25480 1.00303 1.02489 0.96719 1.69903 1.25856 1.56610 1.06957 0.85147 0.79403 0.77374 0.77809 1.21246 1.21729 1.19996 1.22900 0.84192 0.96551 0.96573 1.21070 0.89977 0.99115 0.99068 0.74654 0.75094 0.91865 0.92918 0.93268 0.91813 0.75366 0.94311 0.92129 0.93964 0.94293 0.93850 0.83631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.10 18.54 19.00 0.35 -11.75 16 2 C 0.32 5.99 15.83 88.33 1.40 7.39 16 3 C -0.16 -2.24 5.97 -21.30 -0.13 -2.37 16 4 C 0.15 0.71 11.90 84.28 1.00 1.72 16 5 N -0.50 -3.22 5.92 -183.25 -1.08 -4.30 16 6 H 0.44 -0.12 8.15 -92.71 -0.76 -0.87 16 7 C -0.06 -0.96 6.99 40.03 0.28 -0.68 16 8 C 0.59 14.78 7.45 86.48 0.64 15.43 16 9 O -0.56 -19.49 15.25 -4.30 -0.07 -19.56 16 10 N -0.70 -16.41 4.52 -431.38 -1.95 -18.36 16 11 C 0.16 5.42 0.67 5.36 0.00 5.43 16 12 C -0.09 -3.31 4.81 30.59 0.15 -3.16 16 13 C 0.09 2.60 6.83 71.98 0.49 3.09 16 14 O -0.59 -16.86 13.66 -148.98 -2.03 -18.89 16 15 C 0.17 7.17 6.69 86.44 0.58 7.75 16 16 N -0.63 -31.24 3.55 -715.52 -2.54 -33.78 16 17 C -0.24 -12.96 10.70 84.03 0.90 -12.06 16 18 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 19 C -0.06 -3.08 5.50 84.86 0.47 -2.61 16 20 N -0.94 -53.17 11.39 21.65 0.25 -52.92 16 21 Si 0.97 44.61 29.55 68.60 2.03 46.64 16 22 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 25 C 0.12 5.17 7.55 86.49 0.65 5.82 16 26 C -0.06 -1.18 10.54 22.59 0.24 -0.94 16 27 H 0.24 -1.11 8.06 -2.91 -0.02 -1.13 16 28 H 0.41 6.16 7.80 -92.71 -0.72 5.44 16 29 H 0.06 2.43 7.08 -2.39 -0.02 2.42 16 30 H 0.05 2.31 8.02 -2.39 -0.02 2.29 16 31 H 0.05 1.39 7.54 -2.39 -0.02 1.37 16 32 H 0.06 1.42 7.62 -2.39 -0.02 1.41 16 33 H 0.40 6.66 9.12 -74.06 -0.68 5.99 16 34 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.06 2.80 6.56 -2.38 -0.02 2.78 16 36 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 37 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -80.24 343.65 0.61 -79.63 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -1.02 Total: 8.50 kcal Atomic # 6 Polarization: 18.12 SS G_CDS: 6.68 Total: 24.80 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -4.98 Total: -121.12 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -2.10 Total: -38.45 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -80.24 0.61 -79.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485402486.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.864 kcal (2) G-P(sol) polarization free energy of solvation -80.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds