Wall clock time and date at job start Fri Apr 10 2020 17:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 120.00117 * 2 1 4 4 H 1.48500 * 109.46956 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46525 * 299.99649 * 3 2 1 6 6 H 1.48490 * 109.47385 * 59.99974 * 3 2 1 7 7 C 1.38811 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99898 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00028 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99872 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46754 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47088 * 305.00164 * 11 10 9 13 13 O 1.42899 * 109.46842 * 65.00296 * 11 10 9 14 14 C 1.53006 * 109.46803 * 184.99694 * 11 10 9 15 15 N 1.46501 * 109.46926 * 180.02562 * 14 11 10 16 16 C 1.34778 * 119.99656 * 180.02562 * 15 14 11 17 17 O 1.21788 * 120.00286 * 359.97438 * 16 15 14 18 18 C 1.41696 * 119.99628 * 179.97438 * 16 15 14 19 19 C 1.39183 * 125.87638 * 179.97438 * 18 16 15 20 20 C 1.38080 * 107.68034 * 180.02562 * 19 18 16 21 21 C 1.39505 * 107.56915 * 0.02562 * 20 19 18 22 22 C 1.40617 * 132.41489 * 179.97438 * 21 20 19 23 23 C 1.36295 * 119.15921 * 179.97438 * 22 21 20 24 24 C 1.39966 * 120.04021 * 0.02562 * 23 22 21 25 25 N 1.30643 * 120.98840 * 0.02562 * 24 23 22 26 26 N 1.37155 * 108.20423 * 359.97233 * 21 20 19 27 27 H 0.97001 * 119.99326 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00061 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46641 * 60.00194 * 10 9 7 30 30 H 1.09001 * 109.47130 * 300.00201 * 10 9 7 31 31 H 0.96700 * 114.00587 * 59.99880 * 13 11 10 32 32 H 1.09003 * 109.46388 * 60.00396 * 14 11 10 33 33 H 1.08997 * 109.47056 * 300.00528 * 14 11 10 34 34 H 0.96998 * 120.00042 * 359.97438 * 15 14 11 35 35 H 1.08005 * 126.15679 * 359.97438 * 19 18 16 36 36 H 1.08006 * 126.21434 * 180.02562 * 20 19 18 37 37 H 1.08008 * 120.41772 * 0.23926 * 22 21 20 38 38 H 1.08002 * 119.97559 * 180.02562 * 23 22 21 39 39 H 1.08002 * 119.50096 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0581 -3.6569 0.0016 11 6 1.0637 -4.8197 0.0022 12 1 0.3800 -4.7126 0.8443 13 8 0.3211 -4.8120 -1.2186 14 6 1.8246 -6.1412 0.1279 15 7 0.8726 -7.2547 0.1279 16 6 1.3185 -8.5225 0.2301 17 8 2.5129 -8.7424 0.3220 18 6 0.3977 -9.5995 0.2306 19 6 0.7216 -10.9495 0.3289 20 6 -0.4573 -11.6674 0.2914 21 6 -1.5036 -10.7528 0.1693 22 6 -2.8981 -10.9126 0.0849 23 6 -3.6875 -9.8075 -0.0303 24 6 -3.1088 -8.5335 -0.0641 25 7 -1.8136 -8.3808 0.0130 26 7 -0.9676 -9.4908 0.1334 27 1 -0.4849 0.8401 0.0004 28 1 0.3555 -2.3881 0.0016 29 1 2.6854 -3.7142 0.8912 30 1 2.6841 -3.7150 -0.8888 31 1 0.8667 -4.9036 -2.0116 32 1 2.3912 -6.1470 1.0591 33 1 2.5085 -6.2482 -0.7141 34 1 -0.0786 -7.0795 0.0551 35 1 1.7161 -11.3614 0.4177 36 1 -0.5522 -12.7419 0.3466 37 1 -3.3384 -11.8984 0.1154 38 1 -4.7601 -9.9150 -0.0956 39 1 -3.7425 -7.6638 -0.1560 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497069620.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:11 Heat of formation + Delta-G solvation = 37.087989 kcal Electronic energy + Delta-G solvation = -23824.780989 eV Core-core repulsion = 20156.040889 eV Total energy + Delta-G solvation = -3668.740100 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.32181 -39.55983 -37.81002 -37.24977 -34.44270 -34.02331 -33.55615 -31.30550 -30.78806 -29.86556 -28.50960 -25.76285 -24.74421 -23.54915 -22.53525 -21.38682 -21.32477 -20.54691 -18.72735 -17.58080 -17.13368 -16.55495 -16.29089 -16.25230 -15.91258 -15.73252 -15.16218 -14.51363 -14.39693 -14.15736 -14.00711 -13.65761 -13.38663 -13.09751 -12.86420 -12.71885 -12.61117 -12.38900 -12.20949 -11.80143 -11.18645 -10.97131 -10.94638 -10.82775 -10.57784 -10.21197 -10.12481 -9.79441 -9.47563 -9.26853 -9.01618 -8.89481 -8.11087 -6.92521 -5.75390 -3.04764 0.04469 0.62622 1.54887 1.98988 2.85319 3.27147 3.35269 3.44038 3.49645 3.51944 3.79685 4.09263 4.21075 4.48209 4.56913 4.74189 4.81967 4.91846 4.96832 5.03549 5.25417 5.30675 5.37271 5.55604 5.57207 5.67238 5.69692 5.81370 5.87110 6.00154 6.21586 6.24467 6.40151 6.48868 6.54612 6.70917 7.19477 7.61334 7.70145 7.97936 8.23095 8.42846 9.54516 10.11289 10.47290 11.47147 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.024587 B = 0.002772 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.553523 B =10096.970183 C =11115.089005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.090 3.910 12 H 0.103 0.897 13 O -0.552 6.552 14 C 0.088 3.912 15 N -0.716 5.716 16 C 0.583 3.417 17 O -0.542 6.542 18 C -0.024 4.024 19 C -0.080 4.080 20 C -0.173 4.173 21 C 0.003 3.997 22 C -0.011 4.011 23 C -0.199 4.199 24 C 0.143 3.857 25 N -0.275 5.275 26 N -0.235 5.235 27 H 0.254 0.746 28 H 0.388 0.612 29 H 0.029 0.971 30 H 0.024 0.976 31 H 0.372 0.628 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.413 0.587 35 H 0.166 0.834 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.532 -26.463 -0.267 27.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.371 5.371 10 C -0.001 4.001 11 C 0.030 3.970 12 H 0.121 0.879 13 O -0.356 6.356 14 C -0.036 4.036 15 N -0.370 5.370 16 C 0.371 3.629 17 O -0.421 6.421 18 C -0.141 4.141 19 C -0.105 4.105 20 C -0.199 4.199 21 C -0.109 4.109 22 C -0.038 4.038 23 C -0.222 4.222 24 C -0.048 4.048 25 N -0.085 5.085 26 N 0.001 4.999 27 H 0.064 0.936 28 H 0.223 0.777 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.219 0.781 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.252 0.748 35 H 0.184 0.816 36 H 0.175 0.825 37 H 0.174 0.826 38 H 0.170 0.830 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -7.425 -25.306 0.190 26.374 hybrid contribution -0.488 0.375 -0.376 0.721 sum -7.913 -24.932 -0.186 26.158 Atomic orbital electron populations 1.69694 1.05105 1.25507 1.57577 1.24765 0.95548 0.97729 1.02943 0.86101 0.78779 0.84037 0.77182 1.20539 1.21842 1.21839 1.19276 0.91048 0.84089 1.42843 0.91133 1.42253 1.06077 0.99422 1.89331 1.21208 0.93495 0.86524 0.98900 1.22384 0.94536 0.91812 0.88258 0.87879 1.86577 1.37480 1.96219 1.15349 1.22121 0.92264 0.85968 1.03254 1.46080 1.12153 1.05304 1.73415 1.15749 0.87401 0.82121 0.77597 1.90866 1.15035 1.84729 1.51467 1.19577 0.78153 0.96599 1.19784 1.21350 0.99692 0.89316 1.00133 1.21067 0.90039 0.98909 1.09868 1.19454 0.94419 0.85699 1.11349 1.20958 0.89736 1.00868 0.92248 1.21482 1.02352 0.92039 1.06297 1.24121 0.90310 0.99739 0.90676 1.75562 1.05077 1.08228 1.19594 1.45846 1.05902 1.03612 1.44505 0.93564 0.77744 0.95285 0.95835 0.78106 0.90298 0.90925 0.74794 0.81610 0.82526 0.82649 0.83002 0.78295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.64 13.06 55.49 0.72 -27.92 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.83 5.55 -59.90 -0.33 -19.16 16 10 C 0.13 2.58 5.90 -4.04 -0.02 2.55 16 11 C 0.09 1.51 3.09 -26.73 -0.08 1.43 16 12 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 13 O -0.55 -9.42 13.03 -35.23 -0.46 -9.88 16 14 C 0.09 1.34 5.34 -4.04 -0.02 1.32 16 15 N -0.72 -10.83 5.44 -63.19 -0.34 -11.17 16 16 C 0.58 9.26 7.60 -14.94 -0.11 9.15 16 17 O -0.54 -9.88 16.79 5.11 0.09 -9.79 16 18 C -0.02 -0.34 6.84 -83.74 -0.57 -0.91 16 19 C -0.08 -0.89 10.49 -39.29 -0.41 -1.30 16 20 C -0.17 -1.52 10.92 -39.17 -0.43 -1.94 16 21 C 0.00 0.03 6.80 -84.11 -0.57 -0.55 16 22 C -0.01 -0.07 10.11 -39.38 -0.40 -0.47 16 23 C -0.20 -1.04 10.04 -39.63 -0.40 -1.44 16 24 C 0.14 1.04 11.29 -17.41 -0.20 0.85 16 25 N -0.28 -3.13 9.68 30.61 0.30 -2.83 16 26 N -0.24 -2.87 4.01 -8.28 -0.03 -2.91 16 27 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.39 10.74 7.67 -40.82 -0.31 10.43 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.37 5.34 9.05 45.56 0.41 5.76 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.41 6.13 5.94 -40.82 -0.24 5.89 16 35 H 0.17 1.59 8.06 -52.48 -0.42 1.17 16 36 H 0.16 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.16 0.40 8.06 -52.48 -0.42 -0.02 16 38 H 0.15 0.28 8.06 -52.49 -0.42 -0.14 16 39 H 0.20 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 342.12 15.07 5.16 5.16 Total: -1.00 -36.92 342.12 -7.31 -44.23 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -3.92 Total: 15.44 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -3.47 Total: 1.15 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: 0.31 Total: -63.99 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.37 Total: -19.67 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.92 -7.31 -44.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497069620.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.316 kcal (2) G-P(sol) polarization free energy of solvation -36.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds