Wall clock time and date at job start Fri Apr 10 2020 17:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 120.00117 * 2 1 4 4 H 1.48500 * 109.46956 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46525 * 299.99649 * 3 2 1 6 6 H 1.48490 * 109.47385 * 59.99974 * 3 2 1 7 7 C 1.38811 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99898 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00028 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99872 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46754 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47088 * 305.00164 * 11 10 9 13 13 O 1.42899 * 109.46842 * 65.00296 * 11 10 9 14 14 C 1.53006 * 109.46803 * 184.99694 * 11 10 9 15 15 N 1.46501 * 109.46926 * 180.02562 * 14 11 10 16 16 C 1.34778 * 119.99656 * 180.02562 * 15 14 11 17 17 O 1.21788 * 120.00286 * 359.97438 * 16 15 14 18 18 C 1.41696 * 119.99628 * 179.97438 * 16 15 14 19 19 C 1.39183 * 125.87638 * 179.97438 * 18 16 15 20 20 C 1.38080 * 107.68034 * 180.02562 * 19 18 16 21 21 C 1.39505 * 107.56915 * 0.02562 * 20 19 18 22 22 C 1.40617 * 132.41489 * 179.97438 * 21 20 19 23 23 C 1.36295 * 119.15921 * 179.97438 * 22 21 20 24 24 C 1.39966 * 120.04021 * 0.02562 * 23 22 21 25 25 N 1.30643 * 120.98840 * 0.02562 * 24 23 22 26 26 N 1.37155 * 108.20423 * 359.97233 * 21 20 19 27 27 H 0.97001 * 119.99326 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00061 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46641 * 60.00194 * 10 9 7 30 30 H 1.09001 * 109.47130 * 300.00201 * 10 9 7 31 31 H 0.96700 * 114.00587 * 59.99880 * 13 11 10 32 32 H 1.09003 * 109.46388 * 60.00396 * 14 11 10 33 33 H 1.08997 * 109.47056 * 300.00528 * 14 11 10 34 34 H 0.96998 * 120.00042 * 359.97438 * 15 14 11 35 35 H 1.08005 * 126.15679 * 359.97438 * 19 18 16 36 36 H 1.08006 * 126.21434 * 180.02562 * 20 19 18 37 37 H 1.08008 * 120.41772 * 0.23926 * 22 21 20 38 38 H 1.08002 * 119.97559 * 180.02562 * 23 22 21 39 39 H 1.08002 * 119.50096 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0581 -3.6569 0.0016 11 6 1.0637 -4.8197 0.0022 12 1 0.3800 -4.7126 0.8443 13 8 0.3211 -4.8120 -1.2186 14 6 1.8246 -6.1412 0.1279 15 7 0.8726 -7.2547 0.1279 16 6 1.3185 -8.5225 0.2301 17 8 2.5129 -8.7424 0.3220 18 6 0.3977 -9.5995 0.2306 19 6 0.7216 -10.9495 0.3289 20 6 -0.4573 -11.6674 0.2914 21 6 -1.5036 -10.7528 0.1693 22 6 -2.8981 -10.9126 0.0849 23 6 -3.6875 -9.8075 -0.0303 24 6 -3.1088 -8.5335 -0.0641 25 7 -1.8136 -8.3808 0.0130 26 7 -0.9676 -9.4908 0.1334 27 1 -0.4849 0.8401 0.0004 28 1 0.3555 -2.3881 0.0016 29 1 2.6854 -3.7142 0.8912 30 1 2.6841 -3.7150 -0.8888 31 1 0.8667 -4.9036 -2.0116 32 1 2.3912 -6.1470 1.0591 33 1 2.5085 -6.2482 -0.7141 34 1 -0.0786 -7.0795 0.0551 35 1 1.7161 -11.3614 0.4177 36 1 -0.5522 -12.7419 0.3466 37 1 -3.3384 -11.8984 0.1154 38 1 -4.7601 -9.9150 -0.0956 39 1 -3.7425 -7.6638 -0.1560 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497069620.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:11 Heat of formation + Delta-G solvation = 7.160858 kcal Electronic energy + Delta-G solvation = -23826.078726 eV Core-core repulsion = 20156.040889 eV Total energy + Delta-G solvation = -3670.037837 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.05113 -40.69891 -39.05637 -38.11260 -36.13005 -35.44159 -34.27606 -33.23372 -31.49282 -31.11405 -29.67188 -27.21942 -25.71662 -24.69049 -23.88996 -22.85571 -22.20186 -21.47708 -19.74251 -19.18912 -18.19576 -17.87602 -17.36587 -16.96019 -16.82807 -16.75454 -16.45808 -16.28058 -15.64919 -15.53758 -15.07067 -14.85249 -14.56370 -14.27386 -14.08185 -13.92410 -13.72864 -13.36784 -13.16114 -13.03199 -12.97583 -12.79870 -12.15352 -12.01830 -11.85507 -11.75073 -11.59833 -11.40503 -11.03642 -10.96275 -10.28907 -9.98475 -9.04377 -8.83201 -7.96941 -5.27034 -0.49865 -0.11383 0.85114 1.21786 1.46489 1.47596 1.57853 2.11755 2.22620 2.37044 2.54713 3.16007 3.33133 3.42333 3.52775 3.58307 3.77751 3.91809 3.95331 4.00668 4.14126 4.33706 4.36977 4.46548 4.54241 4.61703 4.75020 4.77594 4.88376 4.99830 5.11399 5.14057 5.21246 5.28977 5.46371 5.60997 5.69080 6.24014 6.38577 6.60078 6.71270 7.06980 7.30977 8.04458 8.29003 9.26600 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.024587 B = 0.002772 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.553523 B =10096.970183 C =11115.089005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.977 3.023 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.249 4.249 8 H 0.077 0.923 9 N -0.740 5.740 10 C 0.125 3.875 11 C 0.110 3.890 12 H 0.094 0.906 13 O -0.561 6.561 14 C 0.099 3.901 15 N -0.715 5.715 16 C 0.581 3.419 17 O -0.580 6.580 18 C -0.081 4.081 19 C -0.084 4.084 20 C -0.171 4.171 21 C 0.002 3.998 22 C -0.017 4.017 23 C -0.182 4.182 24 C 0.143 3.857 25 N -0.326 5.326 26 N -0.246 5.246 27 H 0.252 0.748 28 H 0.376 0.624 29 H 0.035 0.965 30 H 0.034 0.966 31 H 0.384 0.616 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.415 0.585 35 H 0.170 0.830 36 H 0.193 0.807 37 H 0.198 0.802 38 H 0.196 0.804 39 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.181 -28.100 -0.483 29.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.268 4.268 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.380 4.380 8 H 0.095 0.905 9 N -0.383 5.383 10 C -0.002 4.002 11 C 0.050 3.950 12 H 0.112 0.888 13 O -0.368 6.368 14 C -0.026 4.026 15 N -0.369 5.369 16 C 0.372 3.628 17 O -0.462 6.462 18 C -0.196 4.196 19 C -0.110 4.110 20 C -0.196 4.196 21 C -0.111 4.111 22 C -0.043 4.043 23 C -0.205 4.205 24 C -0.046 4.046 25 N -0.137 5.137 26 N -0.009 5.009 27 H 0.061 0.939 28 H 0.208 0.792 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.233 0.767 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.254 0.746 35 H 0.187 0.813 36 H 0.210 0.790 37 H 0.215 0.785 38 H 0.213 0.787 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -9.048 -26.966 -0.035 28.443 hybrid contribution -0.181 0.773 -0.332 0.860 sum -9.230 -26.193 -0.367 27.774 Atomic orbital electron populations 1.69850 1.06669 1.26078 1.59233 1.25628 0.96462 1.01253 1.03489 0.85027 0.78171 0.79517 0.76738 1.19033 1.21893 1.21880 1.19686 0.91546 0.85246 1.41553 0.90525 1.42426 1.05726 1.00731 1.89403 1.21376 0.94024 0.85517 0.99299 1.22053 0.93480 0.91352 0.88068 0.88767 1.86551 1.38114 1.96189 1.15924 1.21928 0.92048 0.85258 1.03371 1.46049 1.12103 1.05194 1.73539 1.16085 0.87447 0.82609 0.76671 1.90814 1.16515 1.85256 1.53651 1.19393 0.79044 0.96686 1.24490 1.21580 1.00905 0.88823 0.99659 1.21476 0.88711 1.00414 1.08974 1.20212 0.96371 0.84892 1.09651 1.21532 0.87941 1.03261 0.91554 1.22008 1.04398 0.90595 1.03477 1.24886 0.89377 1.02138 0.88243 1.75542 1.06821 1.08961 1.22345 1.45885 1.05566 1.04732 1.44675 0.93932 0.79155 0.94689 0.94857 0.76726 0.90425 0.90540 0.74570 0.81263 0.78954 0.78490 0.78691 0.75476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.39 13.06 21.65 0.28 -60.11 16 2 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 3 Si 0.98 46.84 29.55 68.60 2.03 48.86 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 7 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 9 N -0.74 -38.74 5.55 -343.43 -1.91 -40.64 16 10 C 0.13 5.07 5.90 86.38 0.51 5.58 16 11 C 0.11 3.76 3.09 30.60 0.09 3.86 16 12 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 13 O -0.56 -19.33 13.03 -148.98 -1.94 -21.27 16 14 C 0.10 3.07 5.34 86.38 0.46 3.53 16 15 N -0.72 -22.59 5.44 -472.02 -2.57 -25.15 16 16 C 0.58 19.51 7.60 85.10 0.65 20.16 16 17 O -0.58 -22.37 16.79 -4.63 -0.08 -22.44 16 18 C -0.08 -2.31 6.84 39.37 0.27 -2.04 16 19 C -0.08 -1.90 10.49 22.46 0.24 -1.66 16 20 C -0.17 -2.71 10.92 22.54 0.25 -2.46 16 21 C 0.00 0.04 6.80 39.20 0.27 0.30 16 22 C -0.02 -0.14 10.11 22.40 0.23 0.09 16 23 C -0.18 -1.14 10.04 22.24 0.22 -0.92 16 24 C 0.14 1.76 11.29 85.29 0.96 2.72 16 25 N -0.33 -7.28 9.68 -57.06 -0.55 -7.83 16 26 N -0.25 -5.97 4.01 -180.12 -0.72 -6.69 16 27 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.38 21.25 7.67 -92.71 -0.71 20.53 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.38 11.02 9.05 -74.06 -0.67 10.35 16 32 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.41 12.81 5.94 -92.71 -0.55 12.26 16 35 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 36 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.20 -0.10 8.06 -2.91 -0.02 -0.13 16 38 H 0.20 -0.46 8.06 -2.91 -0.02 -0.48 16 39 H 0.23 1.16 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -82.58 342.12 -0.83 -83.41 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: -0.82 Total: 40.07 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 5.45 Total: 11.79 kcal Atomic # 7 Polarization: -134.97 SS G_CDS: -5.46 Total: -140.43 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -2.02 Total: -43.71 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -82.58 -0.83 -83.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497069620.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.571 kcal (2) G-P(sol) polarization free energy of solvation -82.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds