Wall clock time and date at job start Fri Apr 10 2020 17:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99868 * 2 1 4 4 H 1.48501 * 109.47069 * 270.00177 * 3 2 1 5 5 H 1.48504 * 109.46730 * 30.00085 * 3 2 1 6 6 H 1.48497 * 109.47234 * 149.99678 * 3 2 1 7 7 C 1.38808 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00117 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00244 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00143 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47011 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.46582 * 60.00879 * 11 10 9 13 13 O 1.42890 * 109.47528 * 300.00381 * 11 10 9 14 14 C 1.53006 * 109.46946 * 179.97438 * 11 10 9 15 15 N 1.46501 * 109.46926 * 185.00310 * 14 11 10 16 16 C 1.34778 * 119.99656 * 180.02562 * 15 14 11 17 17 O 1.21788 * 120.00286 * 359.97438 * 16 15 14 18 18 C 1.41696 * 119.99628 * 179.97438 * 16 15 14 19 19 C 1.39183 * 125.87638 * 179.97438 * 18 16 15 20 20 C 1.38080 * 107.68034 * 180.02562 * 19 18 16 21 21 C 1.39505 * 107.56915 * 0.02562 * 20 19 18 22 22 C 1.40617 * 132.41489 * 179.97438 * 21 20 19 23 23 C 1.36295 * 119.15921 * 179.97438 * 22 21 20 24 24 C 1.39966 * 120.04021 * 0.02562 * 23 22 21 25 25 N 1.30643 * 120.98840 * 0.02562 * 24 23 22 26 26 N 1.37155 * 108.20423 * 359.97233 * 21 20 19 27 27 H 0.96999 * 120.00330 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99382 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.46730 * 60.01001 * 10 9 7 30 30 H 1.08995 * 109.47801 * 300.00703 * 10 9 7 31 31 H 0.96700 * 114.00602 * 300.00324 * 13 11 10 32 32 H 1.09003 * 109.46388 * 65.00534 * 14 11 10 33 33 H 1.08997 * 109.47056 * 305.00667 * 14 11 10 34 34 H 0.96998 * 120.00042 * 359.97438 * 15 14 11 35 35 H 1.08005 * 126.15679 * 359.97438 * 19 18 16 36 36 H 1.08006 * 126.21434 * 180.02562 * 20 19 18 37 37 H 1.08008 * 120.41772 * 0.23926 * 22 21 20 38 38 H 1.08002 * 119.97559 * 180.02562 * 23 22 21 39 39 H 1.08002 * 119.50096 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0639 -4.8197 -0.0021 12 1 0.4370 -4.7614 -0.8919 13 8 0.2428 -4.7448 1.1649 14 6 1.8290 -6.1447 -0.0039 15 7 0.8815 -7.2555 -0.1247 16 6 1.3316 -8.5257 -0.1472 17 8 2.5260 -8.7501 -0.0676 18 6 0.4151 -9.6001 -0.2636 19 6 0.7435 -10.9522 -0.2993 20 6 -0.4322 -11.6663 -0.4195 21 6 -1.4810 -10.7472 -0.4578 22 6 -2.8741 -10.9021 -0.5701 23 6 -3.6669 -9.7935 -0.5800 24 6 -3.0930 -8.5208 -0.4798 25 7 -1.7992 -8.3726 -0.3763 26 7 -0.9498 -9.4865 -0.3613 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3880 -0.0005 29 1 2.6854 -3.7149 0.8879 30 1 2.6842 -3.7141 -0.8920 31 1 0.7351 -4.7907 1.9960 32 1 2.3874 -6.2430 0.9271 33 1 2.5206 -6.1638 -0.8461 34 1 -0.0698 -7.0769 -0.1878 35 1 1.7388 -11.3678 -0.2439 36 1 -0.5232 -12.7411 -0.4740 37 1 -3.3107 -11.8873 -0.6432 38 1 -4.7385 -9.8972 -0.6653 39 1 -3.7294 -7.6482 -0.4890 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497069621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:14 Heat of formation + Delta-G solvation = 37.204706 kcal Electronic energy + Delta-G solvation = -23817.906867 eV Core-core repulsion = 20149.171828 eV Total energy + Delta-G solvation = -3668.735038 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.32400 -39.55902 -37.80573 -37.25076 -34.45158 -34.00553 -33.56275 -31.29239 -30.79063 -29.86895 -28.50862 -25.76332 -24.74526 -23.55012 -22.53998 -21.36826 -21.33892 -20.54321 -18.72571 -17.58320 -17.12759 -16.55173 -16.29347 -16.25281 -15.91863 -15.73683 -15.14559 -14.49879 -14.41392 -14.14998 -14.00934 -13.66201 -13.39187 -13.10360 -12.87053 -12.70336 -12.61302 -12.37417 -12.21697 -11.79696 -11.18877 -10.97278 -10.93956 -10.81189 -10.57387 -10.21532 -10.15008 -9.78970 -9.46497 -9.27036 -9.01804 -8.88602 -8.11286 -6.92136 -5.74798 -3.04275 0.04191 0.62397 1.54585 1.98797 2.85102 3.27175 3.35166 3.44582 3.49566 3.51397 3.79401 4.09051 4.20847 4.47958 4.56815 4.75078 4.81501 4.91496 4.96907 5.03229 5.25194 5.31777 5.37088 5.55391 5.57453 5.66330 5.69491 5.81210 5.87010 6.00481 6.22263 6.24439 6.39936 6.48729 6.54575 6.71556 7.19104 7.60635 7.69946 7.99746 8.22621 8.43521 9.55101 10.12113 10.48340 11.47628 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.024481 B = 0.002772 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.474838 B =10099.655366 C =11114.200222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.090 3.910 12 H 0.102 0.898 13 O -0.551 6.551 14 C 0.089 3.911 15 N -0.716 5.716 16 C 0.583 3.417 17 O -0.542 6.542 18 C -0.024 4.024 19 C -0.080 4.080 20 C -0.173 4.173 21 C 0.003 3.997 22 C -0.011 4.011 23 C -0.199 4.199 24 C 0.143 3.857 25 N -0.276 5.276 26 N -0.235 5.235 27 H 0.255 0.745 28 H 0.389 0.611 29 H 0.024 0.976 30 H 0.029 0.971 31 H 0.373 0.627 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.412 0.588 35 H 0.166 0.834 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.530 -26.389 -1.022 27.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.371 5.371 10 C -0.002 4.002 11 C 0.030 3.970 12 H 0.120 0.880 13 O -0.356 6.356 14 C -0.036 4.036 15 N -0.370 5.370 16 C 0.371 3.629 17 O -0.421 6.421 18 C -0.141 4.141 19 C -0.105 4.105 20 C -0.199 4.199 21 C -0.109 4.109 22 C -0.038 4.038 23 C -0.222 4.222 24 C -0.048 4.048 25 N -0.085 5.085 26 N 0.001 4.999 27 H 0.065 0.935 28 H 0.223 0.777 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.220 0.780 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.251 0.749 35 H 0.184 0.816 36 H 0.175 0.825 37 H 0.174 0.826 38 H 0.170 0.830 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -7.407 -25.259 -1.308 26.355 hybrid contribution -0.495 0.390 0.242 0.675 sum -7.902 -24.869 -1.066 26.116 Atomic orbital electron populations 1.69681 1.05102 1.25623 1.57474 1.24760 0.95539 0.97713 1.02924 0.86174 0.78636 0.83762 0.77516 1.21699 1.21742 1.20750 1.19229 0.91013 0.84106 1.42998 0.91202 1.42234 1.06132 0.99362 1.89337 1.21197 0.93503 0.86569 0.98913 1.22368 0.93239 0.91739 0.89629 0.87978 1.86573 1.36966 1.96403 1.15639 1.22134 0.92381 0.85990 1.03063 1.46096 1.12149 1.05257 1.73460 1.15749 0.87383 0.82120 0.77607 1.90866 1.14981 1.84672 1.51564 1.19579 0.78180 0.96555 1.19795 1.21351 0.99711 0.89319 1.00105 1.21067 0.90042 0.98875 1.09891 1.19454 0.94473 0.85697 1.11295 1.20959 0.89717 1.00861 0.92256 1.21481 1.02352 0.92018 1.06326 1.24119 0.90347 0.99797 0.90565 1.75552 1.04967 1.08094 1.19921 1.45842 1.05931 1.03540 1.44550 0.93513 0.77653 0.95851 0.95326 0.78028 0.90908 0.90301 0.74877 0.81606 0.82521 0.82644 0.82998 0.78293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.66 13.06 55.49 0.72 -27.93 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.83 5.49 -59.91 -0.33 -19.16 16 10 C 0.13 2.57 5.92 -4.04 -0.02 2.55 16 11 C 0.09 1.52 3.08 -26.73 -0.08 1.44 16 12 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 13 O -0.55 -9.53 13.03 -35.23 -0.46 -9.99 16 14 C 0.09 1.35 5.31 -4.04 -0.02 1.32 16 15 N -0.72 -10.84 5.49 -63.19 -0.35 -11.19 16 16 C 0.58 9.27 7.60 -14.94 -0.11 9.16 16 17 O -0.54 -9.88 16.79 5.11 0.09 -9.79 16 18 C -0.02 -0.33 6.84 -83.74 -0.57 -0.91 16 19 C -0.08 -0.89 10.49 -39.29 -0.41 -1.30 16 20 C -0.17 -1.51 10.92 -39.17 -0.43 -1.94 16 21 C 0.00 0.03 6.80 -84.11 -0.57 -0.55 16 22 C -0.01 -0.07 10.11 -39.38 -0.40 -0.47 16 23 C -0.20 -1.04 10.04 -39.63 -0.40 -1.44 16 24 C 0.14 1.04 11.29 -17.41 -0.20 0.84 16 25 N -0.28 -3.13 9.68 30.61 0.30 -2.84 16 26 N -0.24 -2.87 4.01 -8.28 -0.03 -2.90 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.39 10.78 7.54 -40.82 -0.31 10.47 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.37 5.46 9.05 45.56 0.41 5.87 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.41 6.11 6.07 -40.82 -0.25 5.87 16 35 H 0.17 1.59 8.06 -52.48 -0.42 1.17 16 36 H 0.16 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.16 0.40 8.06 -52.48 -0.42 -0.03 16 38 H 0.15 0.28 8.06 -52.49 -0.42 -0.14 16 39 H 0.20 0.78 8.06 -52.49 -0.42 0.35 16 LS Contribution 342.13 15.07 5.16 5.16 Total: -1.00 -36.93 342.13 -7.31 -44.24 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -3.92 Total: 15.57 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -3.47 Total: 1.15 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: 0.31 Total: -64.02 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.37 Total: -19.78 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.93 -7.31 -44.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497069621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.448 kcal (2) G-P(sol) polarization free energy of solvation -36.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds