Wall clock time and date at job start Fri Apr 10 2020 17:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99868 * 2 1 4 4 H 1.48501 * 109.47069 * 270.00177 * 3 2 1 5 5 H 1.48504 * 109.46730 * 30.00085 * 3 2 1 6 6 H 1.48497 * 109.47234 * 149.99678 * 3 2 1 7 7 C 1.38808 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00117 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00244 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00143 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47011 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.46582 * 60.00879 * 11 10 9 13 13 O 1.42890 * 109.47528 * 300.00381 * 11 10 9 14 14 C 1.53006 * 109.46946 * 179.97438 * 11 10 9 15 15 N 1.46501 * 109.46926 * 185.00310 * 14 11 10 16 16 C 1.34778 * 119.99656 * 180.02562 * 15 14 11 17 17 O 1.21788 * 120.00286 * 359.97438 * 16 15 14 18 18 C 1.41696 * 119.99628 * 179.97438 * 16 15 14 19 19 C 1.39183 * 125.87638 * 179.97438 * 18 16 15 20 20 C 1.38080 * 107.68034 * 180.02562 * 19 18 16 21 21 C 1.39505 * 107.56915 * 0.02562 * 20 19 18 22 22 C 1.40617 * 132.41489 * 179.97438 * 21 20 19 23 23 C 1.36295 * 119.15921 * 179.97438 * 22 21 20 24 24 C 1.39966 * 120.04021 * 0.02562 * 23 22 21 25 25 N 1.30643 * 120.98840 * 0.02562 * 24 23 22 26 26 N 1.37155 * 108.20423 * 359.97233 * 21 20 19 27 27 H 0.96999 * 120.00330 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99382 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.46730 * 60.01001 * 10 9 7 30 30 H 1.08995 * 109.47801 * 300.00703 * 10 9 7 31 31 H 0.96700 * 114.00602 * 300.00324 * 13 11 10 32 32 H 1.09003 * 109.46388 * 65.00534 * 14 11 10 33 33 H 1.08997 * 109.47056 * 305.00667 * 14 11 10 34 34 H 0.96998 * 120.00042 * 359.97438 * 15 14 11 35 35 H 1.08005 * 126.15679 * 359.97438 * 19 18 16 36 36 H 1.08006 * 126.21434 * 180.02562 * 20 19 18 37 37 H 1.08008 * 120.41772 * 0.23926 * 22 21 20 38 38 H 1.08002 * 119.97559 * 180.02562 * 23 22 21 39 39 H 1.08002 * 119.50096 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0639 -4.8197 -0.0021 12 1 0.4370 -4.7614 -0.8919 13 8 0.2428 -4.7448 1.1649 14 6 1.8290 -6.1447 -0.0039 15 7 0.8815 -7.2555 -0.1247 16 6 1.3316 -8.5257 -0.1472 17 8 2.5260 -8.7501 -0.0676 18 6 0.4151 -9.6001 -0.2636 19 6 0.7435 -10.9522 -0.2993 20 6 -0.4322 -11.6663 -0.4195 21 6 -1.4810 -10.7472 -0.4578 22 6 -2.8741 -10.9021 -0.5701 23 6 -3.6669 -9.7935 -0.5800 24 6 -3.0930 -8.5208 -0.4798 25 7 -1.7992 -8.3726 -0.3763 26 7 -0.9498 -9.4865 -0.3613 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3880 -0.0005 29 1 2.6854 -3.7149 0.8879 30 1 2.6842 -3.7141 -0.8920 31 1 0.7351 -4.7907 1.9960 32 1 2.3874 -6.2430 0.9271 33 1 2.5206 -6.1638 -0.8461 34 1 -0.0698 -7.0769 -0.1878 35 1 1.7388 -11.3678 -0.2439 36 1 -0.5232 -12.7411 -0.4740 37 1 -3.3107 -11.8873 -0.6432 38 1 -4.7385 -9.8972 -0.6653 39 1 -3.7294 -7.6482 -0.4890 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497069621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:13 Heat of formation + Delta-G solvation = 7.257098 kcal Electronic energy + Delta-G solvation = -23819.205493 eV Core-core repulsion = 20149.171828 eV Total energy + Delta-G solvation = -3670.033664 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.05279 -40.69804 -39.05707 -38.11577 -36.11360 -35.45737 -34.28017 -33.22189 -31.49470 -31.11758 -29.67104 -27.21907 -25.71772 -24.69109 -23.89192 -22.84847 -22.20765 -21.47616 -19.74200 -19.18640 -18.19787 -17.87346 -17.37006 -16.96857 -16.81603 -16.75631 -16.46585 -16.26831 -15.65465 -15.53763 -15.07219 -14.86161 -14.56564 -14.25143 -14.08571 -13.93090 -13.73187 -13.36501 -13.16253 -13.03209 -12.96922 -12.76727 -12.18957 -12.02822 -11.84859 -11.75234 -11.60398 -11.41043 -11.02520 -10.95147 -10.29172 -9.98637 -9.04038 -8.83354 -7.96432 -5.26620 -0.50061 -0.11541 0.84893 1.21643 1.46443 1.48625 1.57122 2.11826 2.22507 2.36889 2.54964 3.15807 3.33174 3.40961 3.53717 3.58173 3.77603 3.93282 3.95218 4.00173 4.13501 4.33847 4.37242 4.46394 4.54211 4.61675 4.74861 4.77487 4.88041 4.99693 5.11247 5.13741 5.21129 5.29198 5.46247 5.60842 5.68950 6.24274 6.37937 6.59743 6.71531 7.06484 7.31422 8.05240 8.29945 9.26873 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.024481 B = 0.002772 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.474838 B =10099.655366 C =11114.200222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.977 3.023 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.250 4.250 8 H 0.077 0.923 9 N -0.739 5.739 10 C 0.125 3.875 11 C 0.110 3.890 12 H 0.095 0.905 13 O -0.562 6.562 14 C 0.099 3.901 15 N -0.716 5.716 16 C 0.581 3.419 17 O -0.580 6.580 18 C -0.081 4.081 19 C -0.084 4.084 20 C -0.171 4.171 21 C 0.002 3.998 22 C -0.017 4.017 23 C -0.182 4.182 24 C 0.143 3.857 25 N -0.327 5.327 26 N -0.246 5.246 27 H 0.252 0.748 28 H 0.377 0.623 29 H 0.033 0.967 30 H 0.035 0.965 31 H 0.384 0.616 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.414 0.586 35 H 0.170 0.830 36 H 0.193 0.807 37 H 0.198 0.802 38 H 0.196 0.804 39 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.189 -28.001 -1.160 29.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.268 4.268 3 Si 0.805 3.195 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.382 4.382 8 H 0.094 0.906 9 N -0.383 5.383 10 C -0.003 4.003 11 C 0.050 3.950 12 H 0.113 0.887 13 O -0.368 6.368 14 C -0.026 4.026 15 N -0.369 5.369 16 C 0.372 3.628 17 O -0.462 6.462 18 C -0.196 4.196 19 C -0.110 4.110 20 C -0.196 4.196 21 C -0.111 4.111 22 C -0.043 4.043 23 C -0.205 4.205 24 C -0.046 4.046 25 N -0.137 5.137 26 N -0.009 5.009 27 H 0.061 0.939 28 H 0.209 0.791 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.233 0.767 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.254 0.746 35 H 0.187 0.813 36 H 0.211 0.789 37 H 0.215 0.785 38 H 0.213 0.787 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -9.041 -26.892 -1.441 28.407 hybrid contribution -0.184 0.781 0.274 0.848 sum -9.225 -26.111 -1.166 27.717 Atomic orbital electron populations 1.69841 1.06669 1.26156 1.59138 1.25624 0.96450 1.01244 1.03453 0.85095 0.77660 0.79211 0.77493 1.21280 1.22029 1.19410 1.19651 0.91540 0.85268 1.41727 0.90555 1.42400 1.05776 1.00664 1.89412 1.21364 0.94037 0.85575 0.99298 1.22053 0.92247 0.91272 0.89389 0.88704 1.86547 1.37561 1.96384 1.16319 1.21940 0.92121 0.85263 1.03239 1.46064 1.12108 1.05153 1.73585 1.16084 0.87423 0.82602 0.76691 1.90814 1.16458 1.85195 1.53753 1.19395 0.79086 0.96643 1.24495 1.21581 1.00917 0.88819 0.99644 1.21477 0.88716 1.00385 1.08993 1.20212 0.96424 0.84894 1.09590 1.21533 0.87920 1.03258 0.91567 1.22009 1.04394 0.90580 1.03501 1.24888 0.89412 1.02207 0.88117 1.75533 1.06705 1.08810 1.22691 1.45881 1.05597 1.04664 1.44719 0.93924 0.79067 0.94886 0.94742 0.76718 0.90582 0.90355 0.74645 0.81259 0.78949 0.78487 0.78686 0.75454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.40 13.06 21.65 0.28 -60.12 16 2 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 3 Si 0.98 46.81 29.55 68.60 2.03 48.84 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.25 -14.31 9.99 84.03 0.84 -13.47 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.74 -38.73 5.49 -343.46 -1.89 -40.61 16 10 C 0.12 5.06 5.92 86.38 0.51 5.57 16 11 C 0.11 3.77 3.08 30.60 0.09 3.86 16 12 H 0.10 3.39 8.14 -2.38 -0.02 3.37 16 13 O -0.56 -19.61 13.03 -148.98 -1.94 -21.55 16 14 C 0.10 3.08 5.31 86.38 0.46 3.54 16 15 N -0.72 -22.62 5.49 -472.02 -2.59 -25.22 16 16 C 0.58 19.53 7.60 85.10 0.65 20.17 16 17 O -0.58 -22.37 16.79 -4.63 -0.08 -22.45 16 18 C -0.08 -2.31 6.84 39.37 0.27 -2.04 16 19 C -0.08 -1.89 10.49 22.46 0.24 -1.66 16 20 C -0.17 -2.71 10.92 22.54 0.25 -2.46 16 21 C 0.00 0.04 6.80 39.20 0.27 0.31 16 22 C -0.02 -0.14 10.11 22.40 0.23 0.09 16 23 C -0.18 -1.14 10.04 22.24 0.22 -0.92 16 24 C 0.14 1.75 11.29 85.29 0.96 2.72 16 25 N -0.33 -7.29 9.68 -57.06 -0.55 -7.84 16 26 N -0.25 -5.97 4.01 -180.12 -0.72 -6.69 16 27 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 28 H 0.38 21.30 7.54 -92.71 -0.70 20.61 16 29 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.38 11.29 9.05 -74.06 -0.67 10.62 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.41 12.79 6.07 -92.71 -0.56 12.22 16 35 H 0.17 3.43 8.06 -2.91 -0.02 3.40 16 36 H 0.19 1.44 8.06 -2.91 -0.02 1.41 16 37 H 0.20 -0.10 8.06 -2.91 -0.02 -0.13 16 38 H 0.20 -0.46 8.06 -2.91 -0.02 -0.48 16 39 H 0.23 1.14 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -82.61 342.13 -0.83 -83.44 By element: Atomic # 1 Polarization: 41.26 SS G_CDS: -0.82 Total: 40.44 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 5.45 Total: 11.75 kcal Atomic # 7 Polarization: -135.01 SS G_CDS: -5.47 Total: -140.48 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -2.02 Total: -44.00 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -82.61 -0.83 -83.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497069621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.700 kcal (2) G-P(sol) polarization free energy of solvation -82.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds