Wall clock time and date at job start Fri Apr 10 2020 17:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00305 * 2 1 4 4 H 1.48507 * 109.47325 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47446 * 300.00578 * 3 2 1 6 6 H 1.48506 * 109.47089 * 60.00687 * 3 2 1 7 7 C 1.38815 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00307 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00018 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00101 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47279 * 179.97438 * 10 9 7 12 12 C 1.31002 * 120.00477 * 127.09638 * 11 10 9 13 13 C 1.50704 * 119.99802 * 7.54249 * 12 11 10 14 14 N 1.46498 * 109.46588 * 127.11407 * 13 12 11 15 15 C 1.34780 * 119.99785 * 180.02562 * 14 13 12 16 16 O 1.21509 * 119.99663 * 359.97438 * 15 14 13 17 17 C 1.48226 * 120.00139 * 180.02562 * 15 14 13 18 18 C 1.39629 * 119.65088 * 179.72759 * 17 15 14 19 19 C 1.38549 * 119.24156 * 179.73085 * 18 17 15 20 20 C 1.38582 * 118.55199 * 0.52994 * 19 18 17 21 21 C 1.39594 * 119.24916 * 359.73349 * 20 19 18 22 22 C 1.48222 * 119.65458 * 179.97438 * 21 20 19 23 23 N 1.34772 * 120.00139 * 180.02562 * 22 21 20 24 24 O 1.21513 * 119.99995 * 0.02562 * 22 21 20 25 25 N 1.32342 * 119.65401 * 359.97438 * 17 15 14 26 26 H 0.97006 * 119.99724 * 359.97438 * 1 2 3 27 27 H 0.96998 * 119.99768 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.47775 * 59.99150 * 10 9 7 29 29 H 1.09004 * 109.46774 * 299.99320 * 10 9 7 30 30 H 1.08001 * 119.99844 * 307.09661 * 11 10 9 31 31 H 1.07996 * 119.99983 * 187.26855 * 12 11 10 32 32 H 1.08988 * 109.47101 * 247.11518 * 13 12 11 33 33 H 1.09005 * 109.46559 * 7.11822 * 13 12 11 34 34 H 0.96993 * 120.00635 * 0.02562 * 14 13 12 35 35 H 1.08000 * 120.37878 * 359.97438 * 18 17 15 36 36 H 1.07996 * 120.72216 * 180.24193 * 19 18 17 37 37 H 1.07997 * 120.37372 * 179.75079 * 20 19 18 38 38 H 0.96998 * 120.00000 * 359.97438 * 23 22 21 39 39 H 0.97002 * 119.99806 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6569 -0.0016 11 6 1.0786 -4.8022 -0.0022 12 6 1.1733 -5.7446 -0.9073 13 6 2.3566 -5.7773 -1.8400 14 7 2.9789 -7.1027 -1.7929 15 6 4.0622 -7.3658 -2.5504 16 8 4.5224 -6.5038 -3.2726 17 6 4.6916 -8.7070 -2.5032 18 6 5.8102 -8.9734 -3.2952 19 6 6.3951 -10.2282 -3.2403 20 6 5.8381 -11.1826 -2.4040 21 6 4.7156 -10.8512 -1.6432 22 6 4.1122 -11.8652 -0.7462 23 7 3.0281 -11.5530 -0.0090 24 8 4.5950 -12.9781 -0.6755 25 7 4.1844 -9.6409 -1.7145 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0016 28 1 2.6840 -3.7151 0.8887 29 1 2.6851 -3.7142 -0.8912 30 1 0.2986 -4.8462 0.7435 31 1 0.4057 -6.5006 -0.9820 32 1 2.0237 -5.5681 -2.8565 33 1 3.0822 -5.0241 -1.5329 34 1 2.6113 -7.7910 -1.2167 35 1 6.2172 -8.2088 -3.9403 36 1 7.2633 -10.4589 -3.8397 37 1 6.2678 -12.1714 -2.3413 38 1 2.6429 -10.6646 -0.0651 39 1 2.6335 -12.2165 0.5784 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497766405.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:18 Heat of formation + Delta-G solvation = 0.079761 kcal Electronic energy + Delta-G solvation = -22939.271566 eV Core-core repulsion = 19268.926669 eV Total energy + Delta-G solvation = -3670.344897 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.29510 -39.81176 -38.78789 -36.63636 -34.69142 -34.32308 -33.26121 -32.62315 -31.95139 -30.42798 -27.05588 -25.43068 -25.25686 -24.21491 -22.50947 -21.72861 -20.77780 -19.32422 -18.38391 -17.91033 -17.37083 -16.88760 -16.45058 -16.37509 -15.87882 -15.63339 -15.39423 -15.00029 -14.71526 -14.40508 -14.12823 -13.82251 -13.54969 -13.49774 -13.22240 -12.67396 -12.62833 -12.45482 -11.78327 -11.25827 -10.98639 -10.82438 -10.57895 -10.48912 -10.45433 -10.17380 -10.09595 -10.02372 -9.80440 -9.76336 -9.25132 -9.06526 -8.64847 -6.94052 -5.78753 -3.07982 -0.01077 0.37244 2.03997 2.18362 2.68379 2.81401 3.06407 3.43341 3.45905 3.49228 3.51431 3.56674 4.30806 4.32806 4.41539 4.45546 4.60147 4.91107 4.95360 4.99704 5.24888 5.37506 5.52737 5.54503 5.63452 5.81844 5.89119 5.93154 6.17821 6.24183 6.26734 6.49713 6.53830 6.72235 6.83425 7.00378 7.09957 7.39838 7.69256 7.72545 7.98676 8.39700 9.51246 10.06828 10.42063 11.44077 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.023806 B = 0.002348 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.894388 B =11922.522163 C =12707.591931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.728 5.728 10 C 0.161 3.839 11 C -0.106 4.106 12 C -0.200 4.200 13 C 0.138 3.862 14 N -0.700 5.700 15 C 0.566 3.434 16 O -0.526 6.526 17 C 0.085 3.915 18 C -0.087 4.087 19 C -0.085 4.085 20 C -0.091 4.091 21 C 0.072 3.928 22 C 0.581 3.419 23 N -0.833 5.833 24 O -0.536 6.536 25 N -0.434 5.434 26 H 0.255 0.745 27 H 0.385 0.615 28 H 0.029 0.971 29 H 0.036 0.964 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.407 0.593 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.413 0.587 39 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.255 -26.054 -3.987 27.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.372 5.372 10 C 0.034 3.966 11 C -0.126 4.126 12 C -0.220 4.220 13 C 0.016 3.984 14 N -0.351 5.351 15 C 0.350 3.650 16 O -0.402 6.402 17 C -0.056 4.056 18 C -0.108 4.108 19 C -0.110 4.110 20 C -0.112 4.112 21 C -0.069 4.069 22 C 0.364 3.636 23 N -0.396 5.396 24 O -0.412 6.412 25 N -0.149 5.149 26 H 0.065 0.935 27 H 0.218 0.782 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.243 0.757 35 H 0.175 0.825 36 H 0.170 0.830 37 H 0.172 0.828 38 H 0.243 0.757 39 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 8.398 -25.732 -4.065 27.371 hybrid contribution 0.139 0.590 0.041 0.608 sum 8.537 -25.142 -4.024 26.855 Atomic orbital electron populations 1.69676 1.05143 1.25626 1.57678 1.24763 0.95569 0.97779 1.02870 0.86091 0.78832 0.83920 0.77204 1.20468 1.21776 1.21827 1.19291 0.91126 0.83956 1.42773 0.90995 1.42278 1.05913 0.99506 1.89515 1.20016 0.92999 0.84784 0.98775 1.23309 0.99009 0.94703 0.95569 1.22560 0.98807 1.02239 0.98371 1.20669 0.94236 0.83511 0.99941 1.45857 1.29303 1.15681 1.44224 1.17773 0.80788 0.85660 0.80784 1.90841 1.63052 1.46080 1.40220 1.21224 0.95210 0.93746 0.95403 1.22426 0.93752 0.97866 0.96744 1.21717 0.99750 0.92210 0.97371 1.22345 0.94141 1.01398 0.93315 1.21033 0.95593 0.91535 0.98745 1.17787 0.80313 0.86064 0.79439 1.43634 1.31084 1.19144 1.45725 1.90849 1.62305 1.21538 1.66479 1.67329 1.29745 1.00527 1.17310 0.93509 0.78151 0.95382 0.94660 0.86800 0.86928 0.90663 0.88955 0.75711 0.82508 0.82955 0.82796 0.75715 0.76135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -18.49 5.59 -61.09 -0.34 -18.83 16 10 C 0.16 3.19 6.34 -5.20 -0.03 3.16 16 11 C -0.11 -1.65 9.63 -36.03 -0.35 -1.99 16 12 C -0.20 -2.56 9.63 -36.02 -0.35 -2.91 16 13 C 0.14 1.85 5.76 -5.19 -0.03 1.82 16 14 N -0.70 -7.87 5.54 -62.31 -0.35 -8.21 16 15 C 0.57 7.08 7.81 -12.15 -0.09 6.98 16 16 O -0.53 -8.33 16.32 5.36 0.09 -8.24 16 17 C 0.09 0.86 6.75 -83.02 -0.56 0.30 16 18 C -0.09 -0.71 9.63 -38.95 -0.38 -1.08 16 19 C -0.08 -0.51 10.16 -39.34 -0.40 -0.91 16 20 C -0.09 -0.65 9.63 -38.95 -0.38 -1.02 16 21 C 0.07 0.62 6.75 -83.03 -0.56 0.05 16 22 C 0.58 5.14 8.09 -12.16 -0.10 5.04 16 23 N -0.83 -4.74 8.86 30.62 0.27 -4.47 16 24 O -0.54 -6.28 17.16 5.35 0.09 -6.19 16 25 N -0.43 -3.85 8.71 -6.38 -0.06 -3.90 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.38 10.23 7.66 -40.82 -0.31 9.91 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.71 5.30 -51.93 -0.28 0.44 16 30 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.08 1.06 8.14 -51.94 -0.42 0.64 16 33 H 0.09 1.44 5.30 -51.93 -0.28 1.17 16 34 H 0.41 3.61 7.79 -40.82 -0.32 3.29 16 35 H 0.16 1.19 7.64 -52.49 -0.40 0.79 16 36 H 0.15 0.43 8.06 -52.49 -0.42 0.00 16 37 H 0.15 0.92 7.64 -52.49 -0.40 0.52 16 38 H 0.41 1.84 8.16 -40.82 -0.33 1.51 16 39 H 0.41 1.66 8.93 -40.82 -0.36 1.30 16 LS Contribution 346.79 15.07 5.23 5.23 Total: -1.00 -35.08 346.79 -7.17 -42.25 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -4.34 Total: 10.39 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -3.47 Total: 2.02 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: 0.25 Total: -62.96 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.18 Total: -14.43 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.08 -7.17 -42.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497766405.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.334 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds