Wall clock time and date at job start Fri Apr 10 2020 17:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00260 * 2 1 4 4 H 1.48497 * 109.47269 * 240.00561 * 3 2 1 5 5 H 1.48503 * 109.46658 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47157 * 119.99938 * 3 2 1 7 7 C 1.37878 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99859 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99944 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.93955 * 309.66876 * 9 7 2 11 11 C 1.53944 * 113.84009 * 81.35170 * 9 7 2 12 12 N 1.47586 * 86.11584 * 137.96583 * 11 9 7 13 13 S 1.65592 * 134.49360 * 155.36100 * 12 11 9 14 14 O 1.42103 * 104.27801 * 26.07141 * 13 12 11 15 15 O 1.42091 * 104.28200 * 153.93125 * 13 12 11 16 16 C 1.81409 * 104.44948 * 270.00334 * 13 12 11 17 17 C 1.52996 * 109.47019 * 179.97438 * 16 13 12 18 18 H 1.08999 * 110.43547 * 56.08881 * 17 16 13 19 19 C 1.54268 * 110.48863 * 293.54346 * 17 16 13 20 20 C 1.53867 * 106.59843 * 217.71189 * 19 17 16 21 21 C 1.54271 * 106.60200 * 0.02562 * 20 19 17 22 22 H 1.09000 * 110.48501 * 264.79675 * 21 20 19 23 23 N 1.46899 * 110.48676 * 142.28805 * 21 20 19 24 24 C 1.54890 * 104.19403 * 23.60751 * 21 20 19 25 25 C 1.47583 * 91.01287 * 335.36462 * 12 11 9 26 26 H 0.97006 * 120.00105 * 359.97438 * 1 2 3 27 27 H 0.96700 * 114.00311 * 48.41100 * 10 9 7 28 28 H 1.09001 * 113.77002 * 252.26551 * 11 9 7 29 29 H 1.09001 * 113.76680 * 23.66817 * 11 9 7 30 30 H 1.09003 * 109.46552 * 299.99896 * 16 13 12 31 31 H 1.08993 * 109.47372 * 59.99850 * 16 13 12 32 32 H 1.09000 * 110.03089 * 336.99982 * 19 17 16 33 33 H 1.09003 * 110.02926 * 98.37690 * 19 17 16 34 34 H 1.09005 * 110.03203 * 119.28619 * 20 19 17 35 35 H 1.09004 * 110.03565 * 240.71249 * 20 19 17 36 36 H 1.00896 * 111.00495 * 61.45199 * 23 21 20 37 37 H 1.00898 * 110.99609 * 185.41074 * 23 21 20 38 38 H 1.08996 * 110.75613 * 203.74836 * 24 21 20 39 39 H 1.09000 * 110.75545 * 80.37589 * 24 21 20 40 40 H 1.09007 * 113.76493 * 270.33882 * 25 12 11 41 41 H 1.09002 * 113.77172 * 138.94672 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.2454 -2.5617 1.0128 11 6 0.7560 -2.9318 -1.3925 12 7 1.1898 -4.2907 -1.0138 13 16 0.7597 -5.8193 -1.4835 14 8 0.2659 -5.6538 -2.8056 15 8 1.9164 -6.6035 -1.2263 16 6 -0.5844 -6.2783 -0.3549 17 6 -1.0741 -7.6881 -0.6918 18 1 -0.2472 -8.3972 -0.6550 19 6 -1.7425 -7.7097 -2.0820 20 6 -2.9392 -8.6713 -1.9794 21 6 -2.9569 -9.2000 -0.5303 22 1 -2.4374 -10.1562 -0.4667 23 7 -4.3382 -9.3338 -0.0486 24 6 -2.2032 -8.1155 0.2789 25 6 2.1607 -3.7401 -0.0483 26 1 -0.4850 0.8401 0.0004 27 1 -0.3283 -1.7840 1.0462 28 1 -0.3216 -2.8356 -1.5251 29 1 1.3272 -2.5017 -2.2152 30 1 -0.2200 -6.2555 0.6722 31 1 -1.4076 -5.5723 -0.4641 32 1 -2.0881 -6.7101 -2.3457 33 1 -1.0362 -8.0697 -2.8302 34 1 -3.8658 -8.1384 -2.1934 35 1 -2.8143 -9.4989 -2.6778 36 1 -4.8546 -9.9943 -0.6100 37 1 -4.3576 -9.5946 0.9259 38 1 -1.7868 -8.5361 1.1942 39 1 -2.8597 -7.2746 0.5027 40 1 3.1445 -3.5473 -0.4762 41 1 2.2047 -4.2892 0.8922 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574241887.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:20 Heat of formation + Delta-G solvation = -97.719221 kcal Electronic energy + Delta-G solvation = -23877.686244 eV Core-core repulsion = 20306.251665 eV Total energy + Delta-G solvation = -3571.434579 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.83597 -38.44312 -36.63077 -35.51071 -33.92049 -33.78925 -32.18061 -30.32026 -27.94130 -27.77082 -25.26307 -25.00929 -24.38863 -20.47823 -20.17165 -19.49876 -18.20462 -17.51941 -16.70432 -16.64536 -15.78399 -15.68727 -15.48330 -15.25308 -15.06055 -14.22989 -14.03169 -13.69445 -13.59308 -13.11716 -13.03001 -12.58681 -12.24643 -12.11355 -11.79771 -11.62328 -11.60887 -11.51573 -11.44473 -11.30214 -11.17440 -11.07609 -10.95590 -10.80265 -10.63628 -10.53574 -10.28581 -10.16195 -9.27534 -8.98468 -8.75012 -8.52689 -8.04286 -6.35097 -4.44805 0.66318 3.13205 3.19404 3.24944 3.27941 4.10943 4.20642 4.22259 4.28163 4.38864 4.49902 4.77483 4.89651 4.95370 5.07274 5.25511 5.30041 5.39498 5.40131 5.43128 5.64312 5.74287 5.84015 5.91480 6.04939 6.06590 6.08940 6.11550 6.24448 6.29426 6.44638 6.67822 6.76452 6.90831 7.04764 7.14918 7.55804 7.68780 7.87088 8.57833 9.25476 9.43770 10.71282 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.025829 B = 0.003707 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.781189 B = 7550.783375 C = 8029.505255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.239 3.761 10 O -0.576 6.576 11 C 0.112 3.888 12 N -1.039 6.039 13 S 2.622 3.378 14 O -0.962 6.962 15 O -0.971 6.971 16 C -0.618 4.618 17 C -0.081 4.081 18 H 0.085 0.915 19 C -0.139 4.139 20 C -0.115 4.115 21 C 0.080 3.920 22 H 0.042 0.958 23 N -0.844 5.844 24 C -0.103 4.103 25 C 0.136 3.864 26 H 0.273 0.727 27 H 0.392 0.608 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.340 0.660 37 H 0.341 0.659 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.704 -14.031 0.019 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.089 0.911 9 C 0.196 3.804 10 O -0.388 6.388 11 C -0.013 4.013 12 N -0.879 5.879 13 S 2.719 3.281 14 O -0.953 6.953 15 O -0.962 6.962 16 C -0.747 4.747 17 C -0.102 4.102 18 H 0.104 0.896 19 C -0.177 4.177 20 C -0.153 4.153 21 C -0.031 4.031 22 H 0.060 0.940 23 N -0.374 5.374 24 C -0.142 4.142 25 C 0.010 3.990 26 H 0.083 0.917 27 H 0.247 0.753 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.334 -14.426 -0.834 15.403 hybrid contribution -0.063 0.512 0.538 0.746 sum -5.397 -13.913 -0.296 14.926 Atomic orbital electron populations 1.69384 1.06120 1.28196 1.50208 1.25066 0.95025 0.99786 0.93183 0.86416 0.79515 0.81786 0.78933 1.19918 1.21079 1.19939 1.21548 0.93985 0.90184 1.51953 0.91124 1.20011 0.85528 0.91072 0.83786 1.85993 1.48315 1.48406 1.56091 1.23725 0.99414 0.76206 1.01983 1.59902 1.51801 1.19830 1.56395 1.04368 0.75743 0.72710 0.75265 1.93544 1.82705 1.85159 1.33851 1.93528 1.45986 1.70022 1.86632 1.30688 1.20610 1.05076 1.18336 1.21673 0.98834 0.93284 0.96398 0.89620 1.22490 0.97792 1.01574 0.95887 1.22145 0.99137 0.98808 0.95259 1.22250 0.88570 0.97013 0.95309 0.94015 1.58751 1.13714 1.57283 1.07617 1.22553 0.95906 0.98830 0.96954 1.22984 0.92696 0.93383 0.89893 0.91687 0.75304 0.91652 0.90271 0.84965 0.84751 0.89903 0.90911 0.90309 0.91934 0.84760 0.84655 0.91454 0.89626 0.89676 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.58 11.19 55.43 0.62 -21.96 16 2 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 3 Si 0.91 19.45 29.54 -169.99 -5.02 14.43 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.54 -13.37 8.62 -34.44 -0.30 -13.66 16 8 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.24 5.58 1.41 -90.85 -0.13 5.45 16 10 O -0.58 -13.84 13.50 -35.23 -0.48 -14.32 16 11 C 0.11 2.46 8.31 -2.97 -0.02 2.44 16 12 N -1.04 -20.89 3.99 -118.71 -0.47 -21.36 16 13 S 2.62 47.29 5.72 -107.50 -0.61 46.68 16 14 O -0.96 -19.21 16.85 -57.54 -0.97 -20.18 16 15 O -0.97 -19.53 18.02 -57.54 -1.04 -20.57 16 16 C -0.62 -8.83 5.54 37.16 0.21 -8.63 16 17 C -0.08 -1.02 2.90 -88.95 -0.26 -1.28 16 18 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 19 C -0.14 -1.75 5.14 -25.62 -0.13 -1.88 16 20 C -0.12 -1.20 6.53 -25.61 -0.17 -1.36 16 21 C 0.08 0.77 3.99 -66.05 -0.26 0.50 16 22 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 23 N -0.84 -7.06 9.26 -3.26 -0.03 -7.09 16 24 C -0.10 -1.12 5.98 -24.72 -0.15 -1.27 16 25 C 0.14 2.79 8.30 -2.98 -0.02 2.77 16 26 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 27 H 0.39 9.69 6.56 45.56 0.30 9.99 16 28 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.08 1.73 8.09 -51.93 -0.42 1.31 16 30 H 0.13 1.77 8.14 -51.92 -0.42 1.35 16 31 H 0.13 1.88 8.05 -51.93 -0.42 1.46 16 32 H 0.08 1.12 7.54 -51.93 -0.39 0.72 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.34 2.28 9.07 -39.29 -0.36 1.93 16 37 H 0.34 2.38 9.06 -39.29 -0.36 2.03 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.01 8.06 -51.93 -0.42 0.59 16 40 H 0.09 1.65 8.09 -51.93 -0.42 1.23 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 345.31 15.07 5.20 5.20 Total: -1.00 -29.32 345.31 -9.96 -39.28 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -5.83 Total: 15.14 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -1.33 Total: -15.24 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.12 Total: -50.42 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -2.48 Total: -55.07 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 16 Polarization: 47.29 SS G_CDS: -0.61 Total: 46.68 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.32 -9.96 -39.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241887.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.444 kcal (2) G-P(sol) polarization free energy of solvation -29.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds