Wall clock time and date at job start Fri Apr 10 2020 17:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00260 * 2 1 4 4 H 1.48497 * 109.47269 * 240.00561 * 3 2 1 5 5 H 1.48503 * 109.46658 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47157 * 119.99938 * 3 2 1 7 7 C 1.37878 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99859 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99944 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.93955 * 309.66876 * 9 7 2 11 11 C 1.53944 * 113.84009 * 81.35170 * 9 7 2 12 12 N 1.47586 * 86.11584 * 137.96583 * 11 9 7 13 13 S 1.65592 * 134.49360 * 155.36100 * 12 11 9 14 14 O 1.42103 * 104.27801 * 26.07141 * 13 12 11 15 15 O 1.42091 * 104.28200 * 153.93125 * 13 12 11 16 16 C 1.81409 * 104.44948 * 270.00334 * 13 12 11 17 17 C 1.52996 * 109.47019 * 179.97438 * 16 13 12 18 18 H 1.08999 * 110.43547 * 56.08881 * 17 16 13 19 19 C 1.54268 * 110.48863 * 293.54346 * 17 16 13 20 20 C 1.53867 * 106.59843 * 217.71189 * 19 17 16 21 21 C 1.54271 * 106.60200 * 0.02562 * 20 19 17 22 22 H 1.09000 * 110.48501 * 264.79675 * 21 20 19 23 23 N 1.46899 * 110.48676 * 142.28805 * 21 20 19 24 24 C 1.54890 * 104.19403 * 23.60751 * 21 20 19 25 25 C 1.47583 * 91.01287 * 335.36462 * 12 11 9 26 26 H 0.97006 * 120.00105 * 359.97438 * 1 2 3 27 27 H 0.96700 * 114.00311 * 48.41100 * 10 9 7 28 28 H 1.09001 * 113.77002 * 252.26551 * 11 9 7 29 29 H 1.09001 * 113.76680 * 23.66817 * 11 9 7 30 30 H 1.09003 * 109.46552 * 299.99896 * 16 13 12 31 31 H 1.08993 * 109.47372 * 59.99850 * 16 13 12 32 32 H 1.09000 * 110.03089 * 336.99982 * 19 17 16 33 33 H 1.09003 * 110.02926 * 98.37690 * 19 17 16 34 34 H 1.09005 * 110.03203 * 119.28619 * 20 19 17 35 35 H 1.09004 * 110.03565 * 240.71249 * 20 19 17 36 36 H 1.00896 * 111.00495 * 61.45199 * 23 21 20 37 37 H 1.00898 * 110.99609 * 185.41074 * 23 21 20 38 38 H 1.08996 * 110.75613 * 203.74836 * 24 21 20 39 39 H 1.09000 * 110.75545 * 80.37589 * 24 21 20 40 40 H 1.09007 * 113.76493 * 270.33882 * 25 12 11 41 41 H 1.09002 * 113.77172 * 138.94672 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.2454 -2.5617 1.0128 11 6 0.7560 -2.9318 -1.3925 12 7 1.1898 -4.2907 -1.0138 13 16 0.7597 -5.8193 -1.4835 14 8 0.2659 -5.6538 -2.8056 15 8 1.9164 -6.6035 -1.2263 16 6 -0.5844 -6.2783 -0.3549 17 6 -1.0741 -7.6881 -0.6918 18 1 -0.2472 -8.3972 -0.6550 19 6 -1.7425 -7.7097 -2.0820 20 6 -2.9392 -8.6713 -1.9794 21 6 -2.9569 -9.2000 -0.5303 22 1 -2.4374 -10.1562 -0.4667 23 7 -4.3382 -9.3338 -0.0486 24 6 -2.2032 -8.1155 0.2789 25 6 2.1607 -3.7401 -0.0483 26 1 -0.4850 0.8401 0.0004 27 1 -0.3283 -1.7840 1.0462 28 1 -0.3216 -2.8356 -1.5251 29 1 1.3272 -2.5017 -2.2152 30 1 -0.2200 -6.2555 0.6722 31 1 -1.4076 -5.5723 -0.4641 32 1 -2.0881 -6.7101 -2.3457 33 1 -1.0362 -8.0697 -2.8302 34 1 -3.8658 -8.1384 -2.1934 35 1 -2.8143 -9.4989 -2.6778 36 1 -4.8546 -9.9943 -0.6100 37 1 -4.3576 -9.5946 0.9259 38 1 -1.7868 -8.5361 1.1942 39 1 -2.8597 -7.2746 0.5027 40 1 3.1445 -3.5473 -0.4762 41 1 2.2047 -4.2892 0.8922 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574241887.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:20 Heat of formation + Delta-G solvation = -121.786816 kcal Electronic energy + Delta-G solvation = -23878.729893 eV Core-core repulsion = 20306.251665 eV Total energy + Delta-G solvation = -3572.478228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.17643 -39.70313 -38.16389 -37.04406 -35.71083 -34.64643 -34.07322 -31.26044 -29.53243 -28.81318 -26.95647 -26.51365 -25.64900 -21.52895 -21.20407 -20.93931 -19.78101 -19.25643 -18.28807 -17.76129 -17.28997 -16.98309 -16.79803 -16.19262 -16.14237 -15.90418 -15.44510 -15.05680 -14.77424 -14.69029 -14.51342 -13.86836 -13.68524 -13.39305 -13.29529 -13.23939 -13.22325 -13.15454 -12.81243 -12.53665 -12.43204 -12.24476 -12.23342 -12.13388 -11.97275 -11.87057 -11.62620 -11.38140 -11.04647 -10.59947 -10.25307 -9.77120 -9.60960 -8.21879 -6.37998 -0.77057 1.49242 1.50688 1.57580 1.63052 2.42922 2.81475 2.96414 3.06106 3.30701 3.39464 3.45837 3.65300 3.84970 4.04705 4.09626 4.32960 4.34126 4.40345 4.44084 4.45393 4.53634 4.63491 4.71900 4.76775 4.81240 4.93771 4.96178 5.06127 5.07312 5.15610 5.25945 5.26758 5.29456 5.74608 5.87732 6.01142 6.29205 6.63353 6.67407 7.34901 7.51083 8.83077 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.025829 B = 0.003707 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.781189 B = 7550.783375 C = 8029.505255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.032 3.968 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.559 4.559 8 H 0.071 0.929 9 C 0.223 3.777 10 O -0.579 6.579 11 C 0.113 3.887 12 N -1.042 6.042 13 S 2.623 3.377 14 O -0.987 6.987 15 O -0.993 6.993 16 C -0.593 4.593 17 C -0.087 4.087 18 H 0.096 0.904 19 C -0.148 4.148 20 C -0.113 4.113 21 C 0.084 3.916 22 H 0.056 0.944 23 N -0.851 5.851 24 C -0.101 4.101 25 C 0.136 3.864 26 H 0.274 0.726 27 H 0.387 0.613 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.148 0.852 31 H 0.139 0.861 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.350 0.650 37 H 0.350 0.650 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.123 -15.152 0.773 16.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.168 4.168 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.598 4.598 8 H 0.089 0.911 9 C 0.180 3.820 10 O -0.390 6.390 11 C -0.013 4.013 12 N -0.881 5.881 13 S 2.724 3.276 14 O -0.978 6.978 15 O -0.984 6.984 16 C -0.726 4.726 17 C -0.108 4.108 18 H 0.114 0.886 19 C -0.186 4.186 20 C -0.151 4.151 21 C -0.027 4.027 22 H 0.074 0.926 23 N -0.383 5.383 24 C -0.140 4.140 25 C 0.011 3.989 26 H 0.084 0.916 27 H 0.240 0.760 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.166 0.834 31 H 0.158 0.842 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.713 -15.542 -0.103 16.559 hybrid contribution 0.012 0.795 0.307 0.852 sum -5.701 -14.748 0.204 15.813 Atomic orbital electron populations 1.69458 1.06972 1.28800 1.50446 1.25719 0.95771 1.02425 0.92909 0.85518 0.78341 0.78422 0.78779 1.19779 1.20897 1.19738 1.21847 0.94283 0.91330 1.52349 0.91109 1.20211 0.85912 0.91779 0.84111 1.85975 1.48440 1.48030 1.56583 1.23516 0.99001 0.77535 1.01249 1.59871 1.52082 1.19847 1.56305 1.04323 0.76166 0.71730 0.75364 1.93510 1.82968 1.85185 1.36088 1.93495 1.47991 1.69919 1.86950 1.30458 1.18226 1.06556 1.17373 1.21832 0.99907 0.92035 0.97021 0.88552 1.22553 0.98747 1.01432 0.95877 1.22135 0.97736 0.98723 0.96510 1.22179 0.89274 0.97046 0.94218 0.92636 1.58694 1.13087 1.58038 1.08483 1.22547 0.95122 0.99045 0.97283 1.22992 0.92702 0.92443 0.90806 0.91595 0.75958 0.92056 0.90921 0.83351 0.84238 0.91451 0.91313 0.90811 0.90436 0.83609 0.83646 0.89840 0.90578 0.88930 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.11 11.19 21.45 0.24 -45.87 16 2 C 0.03 1.59 5.39 84.66 0.46 2.05 16 3 Si 0.96 39.63 29.54 68.60 2.03 41.66 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 7 C -0.56 -27.82 8.62 25.60 0.22 -27.60 16 8 H 0.07 3.42 7.81 -2.91 -0.02 3.39 16 9 C 0.22 10.39 1.41 -10.88 -0.02 10.37 16 10 O -0.58 -27.80 13.50 -148.98 -2.01 -29.81 16 11 C 0.11 5.02 8.31 86.48 0.72 5.74 16 12 N -1.04 -41.67 3.99 -533.30 -2.13 -43.80 16 13 S 2.62 93.39 5.72 -56.49 -0.32 93.06 16 14 O -0.99 -39.65 16.85 -127.65 -2.15 -41.80 16 15 O -0.99 -39.26 18.02 -127.65 -2.30 -41.56 16 16 C -0.59 -16.03 5.54 71.98 0.40 -15.63 16 17 C -0.09 -2.02 2.90 -9.71 -0.03 -2.04 16 18 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 19 C -0.15 -3.55 5.14 31.32 0.16 -3.39 16 20 C -0.11 -2.12 6.53 31.32 0.20 -1.92 16 21 C 0.08 1.39 3.99 45.99 0.18 1.57 16 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 23 N -0.85 -12.05 9.26 -164.22 -1.52 -13.57 16 24 C -0.10 -1.92 5.98 31.89 0.19 -1.73 16 25 C 0.14 5.52 8.30 86.48 0.72 6.23 16 26 H 0.27 13.17 8.31 -92.70 -0.77 12.40 16 27 H 0.39 19.28 6.56 -74.06 -0.49 18.79 16 28 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.07 3.26 8.09 -2.39 -0.02 3.24 16 30 H 0.15 3.61 8.14 -2.39 -0.02 3.59 16 31 H 0.14 3.73 8.05 -2.39 -0.02 3.71 16 32 H 0.07 1.80 7.54 -2.39 -0.02 1.78 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.46 8.04 -2.38 -0.02 1.44 16 35 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.35 3.80 9.07 -89.70 -0.81 2.99 16 37 H 0.35 3.94 9.06 -89.70 -0.81 3.12 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.62 8.06 -2.39 -0.02 1.60 16 40 H 0.09 3.56 8.09 -2.38 -0.02 3.54 16 41 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -61.24 345.31 -6.02 -67.25 By element: Atomic # 1 Polarization: 41.85 SS G_CDS: -1.05 Total: 40.79 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 3.21 Total: -26.35 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -3.41 Total: -103.24 kcal Atomic # 8 Polarization: -106.70 SS G_CDS: -6.46 Total: -113.17 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Atomic # 16 Polarization: 93.39 SS G_CDS: -0.32 Total: 93.06 kcal Total: -61.24 -6.02 -67.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241887.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.537 kcal (2) G-P(sol) polarization free energy of solvation -61.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds